Clone BO17770 Report

Search the DGRC for BO17770

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG12177-RA
Protein status:BO17770.pep: validated full length
Sequenced Size:1120

Clone Sequence Records

BO17770.3prime Sequence

801 bp (720 high quality bases) assembled on 2006-10-13

> BO17770.3prime
ATGGTCTAGAAAGCTTGCTTGAGTGTCGCGGAGTAGGGCGCCGTCATCCA
AGCCGGCGATCCATTCGCAGATCCGTTTAAAGAACTCGACATCCACCAGC
TCGATAATGCGCACGTTCTCCGGATACTTTTCGCGCTCCCGCAAATGATC
GAGAACCATCTGGCCGCGAGTGTGGGTGCCCCGCAGATCCACGGTGGCGT
GCCAGGTGTTGTGCCTCCGGATCAAGTGATCCTCGAATAGCCAAACGGCC
ACGGCAATGGCATCGCATGGATTCCACGTATCGATCCCGTACTGCTCGAT
CATTGGCAGCCACTGGGCGGCTTCCACCTGGTTGAGCATGGTAATTGCTG
GATGTCCGGCTTCCTTGGCCCTTGCGGCGAAATCCTTCAGGCGCCAGTTA
ATGTGTATATTGAATCTCTCCGGGAGGCAGGCCTCCCACGGCAGTATGGT
GATGGGACAGCGTGTCCTCAGCAGCACCGTGTGCGCCGCCTCCGGATCCG
AGTGAAAGTTGAACTCCGCCGAACGCGAGGAGTTGCCCACGCCCTGATAG
TTGCCGCCCATAATGAACAGATCACGAAAGTTATTCCCAAACTCCGGACC
GTACATCGTATAGCCCAGGGCAAGATTCGTCAGCGGGCCCACGGCAAATA
TGGTGATCTGTTTGGGCCTGGAACGGCAGAGATCATGGATGGCTGTCACT
GCGTGCTCCGCCTGCACGATGTCCTCCAACTGAAGAGCGCAGTCGTCGGT
GAGACAGTCACCGAATCCGTCGCGGCCATGGAAATACTTTTTTTCATCCT
C

BO17770.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-PA 1089 CG12177-RA 304..1086 801..19 3915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-RC 1509 CG12177-RC 651..1433 801..19 3915 100 Minus
CG12177-RB 1210 CG12177-RB 352..1134 801..19 3915 100 Minus
CG12177-RA 1805 CG12177-RA 549..1331 801..19 3915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13678855..13679256 400..801 2010 100 Plus
X 23542271 X 13678373..13678753 19..399 1905 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:57:59 has no hits.

BO17770.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:50 Download gff for BO17770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12177-PA 304..1089 15..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:09:00 Download gff for BO17770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 549..1334 15..801 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:05 Download gff for BO17770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 549..1334 15..801 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:05 Download gff for BO17770.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13678855..13679256 400..801 100   Plus
X 13678369..13678753 15..399 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:09:00 Download gff for BO17770.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13572402..13572786 15..399 99 <- Plus
arm_X 13572888..13573289 400..801 100   Plus

BO17770.5prime Sequence

793 bp (732 high quality bases) assembled on 2006-10-13

> BO17770.5prime
GAAGTTATCAGTCGACATGGCGGACGGACGCATAGTGGAAAACGGCAGAG
GAGGAGGCGGTGAAGGAGTAGCAGCAGCACCATCGCCCAGATACGCGATC
CTCGACTGTGATGGGGGTAGCGACGATGCCTGGGCACTGCTCCTGCTTCT
GCATGCGGCTAAGAGCCATGGGATTCATCTGCTGGCCATCACCACAATGG
GATGCGGCAATACCAGCAGGGAGAATGCGGCACGCAATATGCGACGGATT
CTGGATGCCTGCAAGCGCACAGATATTCCCATATACCTGGGCGCCGTAGA
TGCCCTCATTCCCTCTCTGGAGGATGAAAAAAAGTATTTCCATGGCCGCG
ACGGATTCGGTGACTGTCTCACCGACGACTGCGCTCTTCAGTTGGAGGAC
ATCGTGCAGGCGGAGCACGCAGTGACAGCCATCCATGATCTCTGCCGTTC
CAGGCCCAAACAGATCACCATATTTGCCGTGGGCCCGCTGACGAATCTTG
CCCTGGGCTATACGATGTACGGTCCGGAGTTTGGGAATAACTTTCGTGAT
CTGTTCATTATGGGCGGCAACTATCAGGGCGTGGGCAACTCCTCGCGTTC
GGCGGAGTTCAACTTTCACTCGGATCCGGAGGCGGCGCACACGGTGCTGC
TGAGGACACGCTGTCCCATCACCATACTGCCGTGGGAGGCCTGCCTCCCG
GAGAGATTCAATATACACATTAACTGGCGCCTGAGGGATTTCGCCGCAAG
GGCCAAGGAAGCCGGGACATCCAGCAATTACCATGCTCAACCA

BO17770.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-PA 1089 CG12177-RA 1..749 17..765 3720 99.8 Plus
CG12177-PA 1089 CG12177-RA 748..776 765..793 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-RC 1509 CG12177-RC 348..1123 17..793 3845 99.7 Plus
CG12177-RB 1210 CG12177-RB 49..824 17..793 3845 99.7 Plus
CG12177-RA 1805 CG12177-RA 246..1021 17..793 3845 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13678855..13679301 721..275 2235 100 Minus
X 23542271 X 13679896..13680153 274..17 1290 100 Minus
X 23542271 X 13678683..13678753 793..722 295 97.2 Minus
Blast to na_te.dros performed on 2015-02-10 17:27:23 has no hits.

BO17770.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:51 Download gff for BO17770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12177-PA 1..775 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:49:58 Download gff for BO17770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 241..1020 13..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:43 Download gff for BO17770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 241..1020 13..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:43 Download gff for BO17770.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13678684..13678753 722..792 97 <- Minus
X 13678855..13679301 275..721 100 <- Minus
X 13679896..13680155 13..274 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:49:58 Download gff for BO17770.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13572717..13572786 722..792 97 <- Minus
arm_X 13573929..13574188 13..274 99   Minus
arm_X 13572888..13573334 275..721 100 <- Minus

BO17770.complete Sequence

1120 bp assembled on 2006-10-11

GenBank Submission: FJ634209

> BO17770.complete
GAAGTTATCAGTCGACATGGCGGACGGACGCATAGTGGAAAACGGCAGAG
GAGGAGGCGGTGAAGGAGTAGCAGCAGCACCATCGCCCAGATACGCGATC
CTCGACTGTGATGGGGGTAGCGACGATGCCTGGGCACTGCTCCTGCTTCT
GCATGCGGCTAAGAGCCATGGGATTCATCTGCTGGCCATCACCACAATGG
GATGCGGCAATACCAGCAGGGAGAATGCGGCACGCAATATGCGACGGATT
CTGGATGCCTGCAAGCGCACAGATATTCCCATATACCTGGGCGCCGTAGA
TGCCCTCATTCCCTCTCTGGAGGATGAAAAAAAGTATTTCCATGGCCGCG
ACGGATTCGGTGACTGTCTCACCGACGACTGCGCTCTTCAGTTGGAGGAC
ATCGTGCAGGCGGAGCACGCAGTGACAGCCATCCATGATCTCTGCCGTTC
CAGGCCCAAACAGATCACCATATTTGCCGTGGGCCCGCTGACGAATCTTG
CCCTGGGCTATACGATGTACGGTCCGGAGTTTGGGAATAACTTTCGTGAT
CTGTTCATTATGGGCGGCAACTATCAGGGCGTGGGCAACTCCTCGCGTTC
GGCGGAGTTCAACTTTCACTCGGATCCGGAGGCGGCGCACACGGTGCTGC
TGAGGACACGCTGTCCCATCACCATACTGCCGTGGGAGGCCTGCCTCCCG
GAGAGATTCAATATACACATTAACTGGCGCCTGAAGGATTTCGCCGCAAG
GGCCAAGGAAGCCGGACATCCAGCAATTACCATGCTCAACCAGGTGGAAG
CCGCCCAGTGGCTGCCAATGATCGAGCAGTACGGGATCGATACGTGGAAT
CCATGCGATGCCATTGCCGTGGCCGTTTGGCTATTCGAGGATCACTTGAT
CCGGAGGCACAACACCTGGCACGCCACCGTGGATCTGCGGGGCACCCACA
CTCGCGGCCAGATGGTTCTCGATCATTTGCGGGAGCGCGAAAAGTATCCG
GAGAACGTGCGCATTATCGAGCTGGTGGATGTCGAGTTCTTTAAACGGAT
CTGCGAATGGATCGCCGGCTTGGATGACGGCGCCCTACTCCGCGACACTC
AAGCAAGCTTTCTAGACCAT

BO17770.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-RC 1089 CG12177-PC 1..1086 17..1102 5430 100 Plus
CG12177-RB 1089 CG12177-PB 1..1086 17..1102 5430 100 Plus
CG12177-RA 1089 CG12177-PA 1..1086 17..1102 5430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-RC 1509 CG12177-RC 348..1433 17..1102 5430 100 Plus
CG12177-RB 1210 CG12177-RB 49..1134 17..1102 5430 100 Plus
CG12177-RA 1805 CG12177-RA 246..1331 17..1102 5430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13678855..13679301 721..275 2235 100 Minus
X 23542271 X 13678373..13678753 1102..722 1905 100 Minus
X 23542271 X 13679896..13680153 274..17 1290 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:53:04 has no hits.

BO17770.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:49 Download gff for BO17770.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 1..1089 17..1106 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:30 Download gff for BO17770.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 239..1332 13..1106 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:42 Download gff for BO17770.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 246..1331 17..1104 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:51 Download gff for BO17770.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 239..1332 13..1106 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:48 Download gff for BO17770.complete
Subject Subject Range Query Range Percent Splice Strand
CG12177-RA 246..1331 17..1104 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:48 Download gff for BO17770.complete
Subject Subject Range Query Range Percent Splice Strand
X 13678371..13678753 722..1104 99 <- Minus
X 13678855..13679301 275..721 100 <- Minus
X 13679896..13680153 17..274 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:42 Download gff for BO17770.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13572404..13572786 722..1104 99 <- Minus
arm_X 13572888..13573334 275..721 100 <- Minus
arm_X 13573929..13574186 17..274 100   Minus

BO17770.pep Sequence

Translation from 16 to 1120

> BO17770.pep
MADGRIVENGRGGGGEGVAAAPSPRYAILDCDGGSDDAWALLLLLHAAKS
HGIHLLAITTMGCGNTSRENAARNMRRILDACKRTDIPIYLGAVDALIPS
LEDEKKYFHGRDGFGDCLTDDCALQLEDIVQAEHAVTAIHDLCRSRPKQI
TIFAVGPLTNLALGYTMYGPEFGNNFRDLFIMGGNYQGVGNSSRSAEFNF
HSDPEAAHTVLLRTRCPITILPWEACLPERFNIHINWRLKDFAARAKEAG
HPAITMLNQVEAAQWLPMIEQYGIDTWNPCDAIAVAVWLFEDHLIRRHNT
WHATVDLRGTHTRGQMVLDHLREREKYPENVRIIELVDVEFFKRICEWIA
GLDDGALLRDTQASFLDH

BO17770.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12177-PC 362 CG12177-PC 1..362 1..362 1949 100 Plus
CG12177-PB 362 CG12177-PB 1..362 1..362 1949 100 Plus
CG12177-PA 362 CG12177-PA 1..362 1..362 1949 100 Plus
CG11158-PA 344 CG11158-PA 6..301 25..325 583 41.2 Plus
CG5418-PA 355 CG5418-PA 10..355 25..366 571 38.6 Plus