Clone Sequence Records
BO17770.3prime Sequence
801 bp (720 high quality bases) assembled on 2006-10-13
> BO17770.3prime
ATGGTCTAGAAAGCTTGCTTGAGTGTCGCGGAGTAGGGCGCCGTCATCCA
AGCCGGCGATCCATTCGCAGATCCGTTTAAAGAACTCGACATCCACCAGC
TCGATAATGCGCACGTTCTCCGGATACTTTTCGCGCTCCCGCAAATGATC
GAGAACCATCTGGCCGCGAGTGTGGGTGCCCCGCAGATCCACGGTGGCGT
GCCAGGTGTTGTGCCTCCGGATCAAGTGATCCTCGAATAGCCAAACGGCC
ACGGCAATGGCATCGCATGGATTCCACGTATCGATCCCGTACTGCTCGAT
CATTGGCAGCCACTGGGCGGCTTCCACCTGGTTGAGCATGGTAATTGCTG
GATGTCCGGCTTCCTTGGCCCTTGCGGCGAAATCCTTCAGGCGCCAGTTA
ATGTGTATATTGAATCTCTCCGGGAGGCAGGCCTCCCACGGCAGTATGGT
GATGGGACAGCGTGTCCTCAGCAGCACCGTGTGCGCCGCCTCCGGATCCG
AGTGAAAGTTGAACTCCGCCGAACGCGAGGAGTTGCCCACGCCCTGATAG
TTGCCGCCCATAATGAACAGATCACGAAAGTTATTCCCAAACTCCGGACC
GTACATCGTATAGCCCAGGGCAAGATTCGTCAGCGGGCCCACGGCAAATA
TGGTGATCTGTTTGGGCCTGGAACGGCAGAGATCATGGATGGCTGTCACT
GCGTGCTCCGCCTGCACGATGTCCTCCAACTGAAGAGCGCAGTCGTCGGT
GAGACAGTCACCGAATCCGTCGCGGCCATGGAAATACTTTTTTTCATCCT
C
BO17770.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12177-PA | 1089 | CG12177-RA | 304..1086 | 801..19 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12177-RC | 1509 | CG12177-RC | 651..1433 | 801..19 | 3915 | 100 | Minus |
CG12177-RB | 1210 | CG12177-RB | 352..1134 | 801..19 | 3915 | 100 | Minus |
CG12177-RA | 1805 | CG12177-RA | 549..1331 | 801..19 | 3915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13678855..13679256 | 400..801 | 2010 | 100 | Plus |
X | 23542271 | X | 13678373..13678753 | 19..399 | 1905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:57:59 has no hits.
BO17770.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:50 Download gff for
BO17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-PA | 304..1089 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:09:00 Download gff for
BO17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-RA | 549..1334 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:05 Download gff for
BO17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-RA | 549..1334 | 15..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:05 Download gff for
BO17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13678855..13679256 | 400..801 | 100 | | Plus |
X | 13678369..13678753 | 15..399 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:09:00 Download gff for
BO17770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13572402..13572786 | 15..399 | 99 | <- | Plus |
arm_X | 13572888..13573289 | 400..801 | 100 | | Plus |
BO17770.5prime Sequence
793 bp (732 high quality bases) assembled on 2006-10-13
> BO17770.5prime
GAAGTTATCAGTCGACATGGCGGACGGACGCATAGTGGAAAACGGCAGAG
GAGGAGGCGGTGAAGGAGTAGCAGCAGCACCATCGCCCAGATACGCGATC
CTCGACTGTGATGGGGGTAGCGACGATGCCTGGGCACTGCTCCTGCTTCT
GCATGCGGCTAAGAGCCATGGGATTCATCTGCTGGCCATCACCACAATGG
GATGCGGCAATACCAGCAGGGAGAATGCGGCACGCAATATGCGACGGATT
CTGGATGCCTGCAAGCGCACAGATATTCCCATATACCTGGGCGCCGTAGA
TGCCCTCATTCCCTCTCTGGAGGATGAAAAAAAGTATTTCCATGGCCGCG
ACGGATTCGGTGACTGTCTCACCGACGACTGCGCTCTTCAGTTGGAGGAC
ATCGTGCAGGCGGAGCACGCAGTGACAGCCATCCATGATCTCTGCCGTTC
CAGGCCCAAACAGATCACCATATTTGCCGTGGGCCCGCTGACGAATCTTG
CCCTGGGCTATACGATGTACGGTCCGGAGTTTGGGAATAACTTTCGTGAT
CTGTTCATTATGGGCGGCAACTATCAGGGCGTGGGCAACTCCTCGCGTTC
GGCGGAGTTCAACTTTCACTCGGATCCGGAGGCGGCGCACACGGTGCTGC
TGAGGACACGCTGTCCCATCACCATACTGCCGTGGGAGGCCTGCCTCCCG
GAGAGATTCAATATACACATTAACTGGCGCCTGAGGGATTTCGCCGCAAG
GGCCAAGGAAGCCGGGACATCCAGCAATTACCATGCTCAACCA
BO17770.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12177-PA | 1089 | CG12177-RA | 1..749 | 17..765 | 3720 | 99.8 | Plus |
CG12177-PA | 1089 | CG12177-RA | 748..776 | 765..793 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12177-RC | 1509 | CG12177-RC | 348..1123 | 17..793 | 3845 | 99.7 | Plus |
CG12177-RB | 1210 | CG12177-RB | 49..824 | 17..793 | 3845 | 99.7 | Plus |
CG12177-RA | 1805 | CG12177-RA | 246..1021 | 17..793 | 3845 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13678855..13679301 | 721..275 | 2235 | 100 | Minus |
X | 23542271 | X | 13679896..13680153 | 274..17 | 1290 | 100 | Minus |
X | 23542271 | X | 13678683..13678753 | 793..722 | 295 | 97.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:27:23 has no hits.
BO17770.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:51 Download gff for
BO17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-PA | 1..775 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:49:58 Download gff for
BO17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-RA | 241..1020 | 13..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:43 Download gff for
BO17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-RA | 241..1020 | 13..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:43 Download gff for
BO17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13678684..13678753 | 722..792 | 97 | <- | Minus |
X | 13678855..13679301 | 275..721 | 100 | <- | Minus |
X | 13679896..13680155 | 13..274 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:49:58 Download gff for
BO17770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13572717..13572786 | 722..792 | 97 | <- | Minus |
arm_X | 13573929..13574188 | 13..274 | 99 | | Minus |
arm_X | 13572888..13573334 | 275..721 | 100 | <- | Minus |
BO17770.complete Sequence
1120 bp assembled on 2006-10-11
GenBank Submission: FJ634209
> BO17770.complete
GAAGTTATCAGTCGACATGGCGGACGGACGCATAGTGGAAAACGGCAGAG
GAGGAGGCGGTGAAGGAGTAGCAGCAGCACCATCGCCCAGATACGCGATC
CTCGACTGTGATGGGGGTAGCGACGATGCCTGGGCACTGCTCCTGCTTCT
GCATGCGGCTAAGAGCCATGGGATTCATCTGCTGGCCATCACCACAATGG
GATGCGGCAATACCAGCAGGGAGAATGCGGCACGCAATATGCGACGGATT
CTGGATGCCTGCAAGCGCACAGATATTCCCATATACCTGGGCGCCGTAGA
TGCCCTCATTCCCTCTCTGGAGGATGAAAAAAAGTATTTCCATGGCCGCG
ACGGATTCGGTGACTGTCTCACCGACGACTGCGCTCTTCAGTTGGAGGAC
ATCGTGCAGGCGGAGCACGCAGTGACAGCCATCCATGATCTCTGCCGTTC
CAGGCCCAAACAGATCACCATATTTGCCGTGGGCCCGCTGACGAATCTTG
CCCTGGGCTATACGATGTACGGTCCGGAGTTTGGGAATAACTTTCGTGAT
CTGTTCATTATGGGCGGCAACTATCAGGGCGTGGGCAACTCCTCGCGTTC
GGCGGAGTTCAACTTTCACTCGGATCCGGAGGCGGCGCACACGGTGCTGC
TGAGGACACGCTGTCCCATCACCATACTGCCGTGGGAGGCCTGCCTCCCG
GAGAGATTCAATATACACATTAACTGGCGCCTGAAGGATTTCGCCGCAAG
GGCCAAGGAAGCCGGACATCCAGCAATTACCATGCTCAACCAGGTGGAAG
CCGCCCAGTGGCTGCCAATGATCGAGCAGTACGGGATCGATACGTGGAAT
CCATGCGATGCCATTGCCGTGGCCGTTTGGCTATTCGAGGATCACTTGAT
CCGGAGGCACAACACCTGGCACGCCACCGTGGATCTGCGGGGCACCCACA
CTCGCGGCCAGATGGTTCTCGATCATTTGCGGGAGCGCGAAAAGTATCCG
GAGAACGTGCGCATTATCGAGCTGGTGGATGTCGAGTTCTTTAAACGGAT
CTGCGAATGGATCGCCGGCTTGGATGACGGCGCCCTACTCCGCGACACTC
AAGCAAGCTTTCTAGACCAT
BO17770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12177-RC | 1089 | CG12177-PC | 1..1086 | 17..1102 | 5430 | 100 | Plus |
CG12177-RB | 1089 | CG12177-PB | 1..1086 | 17..1102 | 5430 | 100 | Plus |
CG12177-RA | 1089 | CG12177-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12177-RC | 1509 | CG12177-RC | 348..1433 | 17..1102 | 5430 | 100 | Plus |
CG12177-RB | 1210 | CG12177-RB | 49..1134 | 17..1102 | 5430 | 100 | Plus |
CG12177-RA | 1805 | CG12177-RA | 246..1331 | 17..1102 | 5430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13678855..13679301 | 721..275 | 2235 | 100 | Minus |
X | 23542271 | X | 13678373..13678753 | 1102..722 | 1905 | 100 | Minus |
X | 23542271 | X | 13679896..13680153 | 274..17 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:04 has no hits.
BO17770.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:49 Download gff for
BO17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-RA | 1..1089 | 17..1106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:30 Download gff for
BO17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-RA | 239..1332 | 13..1106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:42 Download gff for
BO17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-RA | 246..1331 | 17..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:51 Download gff for
BO17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-RA | 239..1332 | 13..1106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:48 Download gff for
BO17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12177-RA | 246..1331 | 17..1104 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:48 Download gff for
BO17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13678371..13678753 | 722..1104 | 99 | <- | Minus |
X | 13678855..13679301 | 275..721 | 100 | <- | Minus |
X | 13679896..13680153 | 17..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:42 Download gff for
BO17770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13572404..13572786 | 722..1104 | 99 | <- | Minus |
arm_X | 13572888..13573334 | 275..721 | 100 | <- | Minus |
arm_X | 13573929..13574186 | 17..274 | 100 | | Minus |
BO17770.pep Sequence
Translation from 16 to 1120
> BO17770.pep
MADGRIVENGRGGGGEGVAAAPSPRYAILDCDGGSDDAWALLLLLHAAKS
HGIHLLAITTMGCGNTSRENAARNMRRILDACKRTDIPIYLGAVDALIPS
LEDEKKYFHGRDGFGDCLTDDCALQLEDIVQAEHAVTAIHDLCRSRPKQI
TIFAVGPLTNLALGYTMYGPEFGNNFRDLFIMGGNYQGVGNSSRSAEFNF
HSDPEAAHTVLLRTRCPITILPWEACLPERFNIHINWRLKDFAARAKEAG
HPAITMLNQVEAAQWLPMIEQYGIDTWNPCDAIAVAVWLFEDHLIRRHNT
WHATVDLRGTHTRGQMVLDHLREREKYPENVRIIELVDVEFFKRICEWIA
GLDDGALLRDTQASFLDH
BO17770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12177-PC | 362 | CG12177-PC | 1..362 | 1..362 | 1949 | 100 | Plus |
CG12177-PB | 362 | CG12177-PB | 1..362 | 1..362 | 1949 | 100 | Plus |
CG12177-PA | 362 | CG12177-PA | 1..362 | 1..362 | 1949 | 100 | Plus |
CG11158-PA | 344 | CG11158-PA | 6..301 | 25..325 | 583 | 41.2 | Plus |
CG5418-PA | 355 | CG5418-PA | 10..355 | 25..366 | 571 | 38.6 | Plus |