Clone Sequence Records
BO17773.3prime Sequence
287 bp (287 high quality bases) assembled on 2006-10-13
> BO17773.3prime
ATGGTCTAGAAAGCTTGCTTGCCGCAGAAGATGAGCCACAATCACCGAGA
GCAGTGTGCCAGTTAGGACGCCCATCAGTCCTAGCCTATGGATGCCCGCC
GAGTTGCAGCCGTCCTTGCTGTTGCACGTGCAGAACTCCATGAAGATGTT
GTAGCTGCCAGTGCGCATCAGGCAGAAGCGTTCGTCGCCCTCGATGCCCG
GCTCGCCCATGTAGGCGCAGCTGCGAAAGTAGCGCCATTCACCGTGCACC
TTCTGCCGGATCTTGCGACACATGTCGACTGATAACT
BO17773.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17218-PA | 456 | CG17218-RA | 199..453 | 273..19 | 1275 | 100 | Minus |
| CG17218-PB | 258 | CG17218-RB | 1..255 | 273..19 | 1275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crok-RA | 1033 | CG17218-RA | 288..542 | 273..19 | 1275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12173346..12173600 | 273..19 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:41:39 has no hits.
BO17773.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:53 Download gff for
BO17773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17218-PB | 1..258 | 18..273 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:17 Download gff for
BO17773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crok-RA | 283..542 | 19..277 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:24 Download gff for
BO17773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crok-RA | 283..542 | 19..277 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:24 Download gff for
BO17773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12173341..12173600 | 19..277 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:17 Download gff for
BO17773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12173341..12173600 | 19..277 | 99 | | Minus |
BO17773.5prime Sequence
287 bp (287 high quality bases) assembled on 2006-10-13
> BO17773.5prime
GAAGTTATCAGTCGACATGTGTCGCAAGATCCGGCAGAAGGTGCACGGTG
AATGGCGCTACTTTCGCAGCTGCGCCTACATGGGCGAGCCGGGCATCGAG
GGCGACGAACGCTTCTGCCTGATGCGCACTGGCAGCTACAACATCTTCAT
GGAGTTCTGCACGTGCAACAGCAAGGACGGCTGCAACTCGGCGGGCATCC
ATAGGCTAGGACTGATGGGCGTCCTAACTGGCACACTGCTCTCGGTGATT
GTGGCTCATCTTCTGCGGCAAGCAAGCTTTCTAGACC
BO17773.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17218-PA | 456 | CG17218-RA | 199..453 | 17..271 | 1275 | 100 | Plus |
| CG17218-PB | 258 | CG17218-RB | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crok-RA | 1033 | CG17218-RA | 288..542 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12173346..12173600 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:55:05 has no hits.
BO17773.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:54 Download gff for
BO17773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17218-PB | 1..258 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:31 Download gff for
BO17773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crok-RA | 283..542 | 13..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:26 Download gff for
BO17773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crok-RA | 283..542 | 13..271 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:26 Download gff for
BO17773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12173341..12173600 | 13..271 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:31 Download gff for
BO17773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12173341..12173600 | 13..271 | 99 | | Plus |
BO17773.complete Sequence
289 bp assembled on 2006-10-11
GenBank Submission: FJ634210
> BO17773.complete
GAAGTTATCAGTCGACATGTGTCGCAAGATCCGGCAGAAGGTGCACGGTG
AATGGCGCTACTTTCGCAGCTGCGCCTACATGGGCGAGCCGGGCATCGAG
GGCGACGAACGCTTCTGCCTGATGCGCACTGGCAGCTACAACATCTTCAT
GGAGTTCTGCACGTGCAACAGCAAGGACGGCTGCAACTCGGCGGGCATCC
ATAGGCTAGGACTGATGGGCGTCCTAACTGGCACACTGCTCTCGGTGATT
GTGGCTCATCTTCTGCGGCAAGCAAGCTTTCTAGACCAT
BO17773.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crok-RA | 456 | CG17218-PA | 199..453 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crok-RA | 1033 | CG17218-RA | 288..542 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12173346..12173600 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:39:49 has no hits.
BO17773.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:14 Download gff for
BO17773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17218-RA | 194..456 | 13..272 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:34 Download gff for
BO17773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17218-RA | 280..539 | 13..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:52 Download gff for
BO17773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crok-RA | 288..542 | 17..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:14 Download gff for
BO17773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17218-RA | 280..539 | 13..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:41 Download gff for
BO17773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crok-RA | 288..542 | 17..273 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:41 Download gff for
BO17773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12173346..12173600 | 17..273 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:52 Download gff for
BO17773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12173346..12173600 | 17..273 | 99 | | Plus |
BO17773.pep Sequence
Translation from 16 to 289
> BO17773.pep
MCRKIRQKVHGEWRYFRSCAYMGEPGIEGDERFCLMRTGSYNIFMEFCTC
NSKDGCNSAGIHRLGLMGVLTGTLLSVIVAHLLRQASFLDH
BO17773.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crok-PA | 151 | CG17218-PA | 67..151 | 1..85 | 466 | 100 | Plus |
