Clone BO17774 Report

Search the DGRC for BO17774

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG33253-RA
Protein status:BO17774.pep: validated full length
Sequenced Size:1135

Clone Sequence Records

BO17774.3prime Sequence

727 bp (671 high quality bases) assembled on 2006-10-13

> BO17774.3prime
ATGGTCTAGAAAGCTTGCCTGGTGGTGTTGGTGCGGGTGTCGATGGAGTG
GCGTGCCAGGAGCCGCAGGATGTTGTTGTTGTTGGTGCTGATGCTGCTGC
TGTTGCTGTTGCAGCTGCTGCTGGTGTTGCAGTTGCAGCTGCTGCGAGTG
TGCTTGGGTATTCAGGAAGGGCGTGAGCAGCTCCATGGGCAGCGGGAAGA
TGATGGTCGAATTCTTCTCGGTTGAAATGCTGCTCAGTGTTTGCAAGTAT
CGCAACTGCAGGGCGGATGGACTGGCCGAGATGATCTCGGAAGCCTCGCG
CAGAGCCCTCGACGACTTCATCTCGCCCTCGGCGGCAATGACCTTGGCCC
GCGCCTCCCTCGCTGCCTCCGCCTCGGCGGCCATCGCCCGCTGGAGGGCA
GTTGGCAAGGATACGTCCTTGATCTCCACGCGCTCCACCTTAACGCCCCA
GGGATCGGTGGCCTCGTCCAGGGACATCTGCATGGTGTGCGAGATGGTCT
CGCGTTCGGTCAGCAGCTCGGACAGATTCCTGGTGCCGAGCACATTGCGC
AGCGTGGTGGCCGCCAGGAGACTCGTCGAATGGCTGTAATTGTACACCTG
GATGACCGCCTTGAGGGGATCGCTGATGCGGTAGTAGACAACCGCATCTA
CCGTCACAGTAACCGAGTCCTTGGAGAGCACCTCCTGCGGCGGCACGTCA
AAGGAGACGGTGCGCAGATCCCCGGAT

BO17774.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33253-PA 1104 CG33253-RA 399..1101 721..19 3515 100 Minus
CG7635-PA 1053 Mec2-RA 829..929 276..176 180 87.1 Minus
CG7635-PA 1053 Mec2-RA 635..689 470..416 150 90.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG33253-RB 1733 CG33253-RB 516..1225 727..19 3525 99.9 Minus
CG33253-RC 2410 CG33253-RC 1193..1902 727..19 3525 99.9 Minus
CG33253-RA 1733 CG33253-RA 516..1225 727..19 3525 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19185907..19186206 721..422 1500 100 Minus
X 23542271 X 19186532..19186770 257..19 1195 100 Minus
X 23542271 X 19186278..19186443 421..256 830 100 Minus
X 23542271 X 19189248..19189547 721..422 480 77.3 Minus
X 23542271 X 19189882..19189964 258..176 250 86.7 Minus
X 23542271 X 19189640..19189805 421..256 245 76.5 Minus
3L 28110227 3L 4589824..4589922 384..286 210 80.8 Minus
Blast to na_te.dros performed 2015-02-10 21:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2403..2550 156..15 223 64.7 Minus

BO17774.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:55 Download gff for BO17774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33253-PA 392..1104 16..727 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:09:01 Download gff for BO17774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33253-RA 516..1232 12..727 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:10 Download gff for BO17774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33253-RA 516..1232 12..727 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:10 Download gff for BO17774.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19186278..19186443 256..421 100 -> Minus
X 19186534..19186777 12..255 98   Minus
X 19185900..19186206 422..727 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:09:01 Download gff for BO17774.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19079933..19080239 422..727 99 -> Minus
arm_X 19080311..19080476 256..421 100 -> Minus
arm_X 19080567..19080810 12..255 98   Minus

BO17774.5prime Sequence

671 bp (670 high quality bases) assembled on 2006-10-13

> BO17774.5prime
GAAGTTATCAGTCGACATGCATCCTGCCTCGCCGCATCAGCACCGCGCCC
GCCTGCATGTCGGATCGCCAGGATCGGGTGGCATACAGGCCTCCTCCTCC
ACGGAGACCTTCCCACTCACTCCGCAGCACCAGTCCTCGCAGCACGCCGT
TCACATCCCGCCGCCCCCCTCCCTGCCCTACCAGGGACTCAAGACCTCTG
AAAACGATGACATGGGCTGCGTGGAGATCCTGGCCACGGTGGTGTCCGTG
CTGATCATGGTGCTAACCTTTCCCATCTCGGTGTTCATCTGCTTCAAGGT
GGTCTCCGAGTACGAGCGAGCGGTGATCTTCCGGATGGGGCGACTGCGCA
GCGGCGGAGCCCGTGGTCCCGGGGTCTTCTTTGTGCTGCCCTGCGTGGAC
GACTACTATCCGGTGGATCTGCGCACCGTCTCCTTTGACGTGCCGCCGCA
GGAGGTGCTCTCCAAGGACTCGGTTACTGTGACGGTAGATGCGGTTGTCT
ACTACCGCATCAGCGATCCCCTCAAGGCGGTCATCCAGGTGTACAATTAC
AGCCATTCGACGAGTCTCCTGGCGGCCACCACGCTGCGCAATGTGCTCGG
CACCAGGAATCTGTCCGAGCTGCTGACCGAACGCGAGACCATCTCGCACA
CCATGCAGATGTCCCTGGACG

BO17774.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33253-PA 1104 CG33253-RA 1..655 17..671 3275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG33253-RB 1733 CG33253-RB 125..779 17..671 3275 100 Plus
CG33253-RA 1733 CG33253-RA 125..779 17..671 3275 100 Plus
CG33253-RC 2410 CG33253-RC 983..1456 198..671 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19185690..19186163 198..671 2370 100 Plus
X 23542271 X 19183545..19183725 17..197 905 100 Plus
X 23542271 X 19189120..19189473 284..640 535 77.3 Plus
Blast to na_te.dros performed on 2015-02-06 10:41:51 has no hits.

BO17774.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:55 Download gff for BO17774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33253-PA 1..655 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:19 Download gff for BO17774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33253-RA 125..779 17..671 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:25 Download gff for BO17774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33253-RA 125..779 17..671 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:25 Download gff for BO17774.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19183545..19183725 17..197 100 -> Plus
X 19185690..19186163 198..671 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:19 Download gff for BO17774.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19077578..19077758 17..197 100 -> Plus
arm_X 19079723..19080196 198..671 100   Plus

BO17774.complete Sequence

1135 bp assembled on 2006-10-11

GenBank Submission: FJ634211

> BO17774.complete
GAAGTTATCAGTCGACATGCATCCTGCCTCGCCGCATCAGCACCGCGCCC
GCCTGCATGTCGGATCGCCAGGATCGGGTGGCATACAGGCCTCCTCCTCC
ACGGAGACCTTCCCACTCACTCCGCAGCACCAGTCCTCGCAGCACGCCGT
TCACATCCCGCCGCCCCCCTCCCTGCCCTACCAGGGACTCAAGACCTCTG
AAAACGATGACATGGGCTGCGTGGAGATCCTGGCCACGGTGGTGTCCGTG
CTGATCATGGTGCTAACCTTTCCCATCTCGGTGTTCATCTGCTTCAAGGT
GGTCTCCGAGTACGAGCGAGCGGTGATCTTCCGGATGGGGCGACTGCGCA
GCGGCGGAGCCCGTGGTCCCGGGGTCTTCTTTGTGCTGCCCTGCGTGGAC
GACTACTATCCGGTGGATCTGCGCACCGTCTCCTTTGACGTGCCGCCGCA
GGAGGTGCTCTCCAAGGACTCGGTTACTGTGACGGTAGATGCGGTTGTCT
ACTACCGCATCAGCGATCCCCTCAAGGCGGTCATCCAGGTGTACAATTAC
AGCCATTCGACGAGTCTCCTGGCGGCCACCACGCTGCGCAATGTGCTCGG
CACCAGGAATCTGTCCGAGCTGCTGACCGAACGCGAGACCATCTCGCACA
CCATGCAGATGTCCCTGGACGAGGCCACCGATCCCTGGGGCGTTAAGGTG
GAGCGCGTGGAGATCAAGGACGTATCCTTGCCAACTGCCCTCCAGCGGGC
GATGGCCGCCGAGGCGGAGGCAGCGAGGGAGGCGCGGGCCAAGGTCATTG
CCGCCGAGGGCGAGATGAAGTCGTCGAGGGCTCTGCGCGAGGCTTCCGAG
ATCATCTCGGCCAGTCCATCCGCCCTGCAGTTGCGATACTTGCAAACACT
GAGCAGCATTTCAACCGAGAAGAATTCGACCATCATCTTCCCGCTGCCCA
TGGAGCTGCTCACGCCCTTCCTGAATACCCAAGCACACTCGCAGCAGCTG
CAACTGCAACACCAGCAGCAGCTGCAACAGCAACAGCAGCAGCATCAGCA
CCAACAACAACAACATCCTGCGGCTCCTGGCACGCCACTCCATCGACACC
CGCACCAACACCACCAGGCAAGCTTTCTAGACCAT

BO17774.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33253-RB 1245 CG33253-PB 1..1101 17..1117 5505 100 Plus
CG33253-RA 1104 CG33253-PA 1..1101 17..1117 5505 100 Plus
CG33253-RC 909 CG33253-PC 1..906 212..1117 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33253-RB 1733 CG33253-RB 125..1225 17..1117 5505 100 Plus
CG33253-RA 1733 CG33253-RA 125..1225 17..1117 5505 100 Plus
CG33253-RC 2410 CG33253-RC 983..1902 198..1117 4600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19185690..19186206 198..714 2585 100 Plus
X 23542271 X 19186532..19186770 879..1117 1195 100 Plus
X 23542271 X 19183545..19183725 17..197 905 100 Plus
X 23542271 X 19186278..19186443 715..880 830 100 Plus
X 23542271 X 19189120..19189547 284..714 650 77.3 Plus
X 23542271 X 19189882..19189964 878..960 250 86.7 Plus
X 23542271 X 19189640..19189805 715..880 245 76.5 Plus
3L 28110227 3L 4589824..4589922 752..850 210 80.8 Plus
Blast to na_te.dros performed 2014-11-27 07:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2403..2550 980..1121 223 64.7 Plus

BO17774.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:52 Download gff for BO17774.complete
Subject Subject Range Query Range Percent Splice Strand
CG33253-RA 1..1104 17..1120 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:32 Download gff for BO17774.complete
Subject Subject Range Query Range Percent Splice Strand
CG33253-RA 122..1229 17..1124 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:52 Download gff for BO17774.complete
Subject Subject Range Query Range Percent Splice Strand
CG33253-RA 125..1225 17..1119 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:52 Download gff for BO17774.complete
Subject Subject Range Query Range Percent Splice Strand
CG33253-RA 122..1229 17..1124 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:17 Download gff for BO17774.complete
Subject Subject Range Query Range Percent Splice Strand
CG33253-RA 125..1225 17..1119 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:17 Download gff for BO17774.complete
Subject Subject Range Query Range Percent Splice Strand
X 19183545..19183725 17..197 100 -> Plus
X 19185690..19186206 198..714 100 -> Plus
X 19186278..19186443 715..880 100 -> Plus
X 19186534..19186770 881..1119 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:52 Download gff for BO17774.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19077578..19077758 17..197 100 -> Plus
arm_X 19079723..19080239 198..714 100 -> Plus
arm_X 19080311..19080476 715..880 100 -> Plus
arm_X 19080567..19080803 881..1119 99   Plus

BO17774.pep Sequence

Translation from 16 to 1135

> BO17774.pep
MHPASPHQHRARLHVGSPGSGGIQASSSTETFPLTPQHQSSQHAVHIPPP
PSLPYQGLKTSENDDMGCVEILATVVSVLIMVLTFPISVFICFKVVSEYE
RAVIFRMGRLRSGGARGPGVFFVLPCVDDYYPVDLRTVSFDVPPQEVLSK
DSVTVTVDAVVYYRISDPLKAVIQVYNYSHSTSLLAATTLRNVLGTRNLS
ELLTERETISHTMQMSLDEATDPWGVKVERVEIKDVSLPTALQRAMAAEA
EAAREARAKVIAAEGEMKSSRALREASEIISASPSALQLRYLQTLSSIST
EKNSTIIFPLPMELLTPFLNTQAHSQQLQLQHQQQLQQQQQQHQHQQQQH
PAAPGTPLHRHPHQHHQASFLDH

BO17774.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33253-PA 367 CG33253-PA 1..367 1..367 1876 100 Plus
CG33253-PB 414 CG33253-PB 1..367 1..367 1876 100 Plus
CG33253-PC 302 CG33253-PC 1..302 66..367 1521 100 Plus
Mec2-PA 350 CG7635-PA 45..319 49..324 1064 76.1 Plus
CG42540-PH 393 CG42540-PH 49..381 58..367 952 61.3 Plus