Clone Sequence Records
BO17774.3prime Sequence
727 bp (671 high quality bases) assembled on 2006-10-13
> BO17774.3prime
ATGGTCTAGAAAGCTTGCCTGGTGGTGTTGGTGCGGGTGTCGATGGAGTG
GCGTGCCAGGAGCCGCAGGATGTTGTTGTTGTTGGTGCTGATGCTGCTGC
TGTTGCTGTTGCAGCTGCTGCTGGTGTTGCAGTTGCAGCTGCTGCGAGTG
TGCTTGGGTATTCAGGAAGGGCGTGAGCAGCTCCATGGGCAGCGGGAAGA
TGATGGTCGAATTCTTCTCGGTTGAAATGCTGCTCAGTGTTTGCAAGTAT
CGCAACTGCAGGGCGGATGGACTGGCCGAGATGATCTCGGAAGCCTCGCG
CAGAGCCCTCGACGACTTCATCTCGCCCTCGGCGGCAATGACCTTGGCCC
GCGCCTCCCTCGCTGCCTCCGCCTCGGCGGCCATCGCCCGCTGGAGGGCA
GTTGGCAAGGATACGTCCTTGATCTCCACGCGCTCCACCTTAACGCCCCA
GGGATCGGTGGCCTCGTCCAGGGACATCTGCATGGTGTGCGAGATGGTCT
CGCGTTCGGTCAGCAGCTCGGACAGATTCCTGGTGCCGAGCACATTGCGC
AGCGTGGTGGCCGCCAGGAGACTCGTCGAATGGCTGTAATTGTACACCTG
GATGACCGCCTTGAGGGGATCGCTGATGCGGTAGTAGACAACCGCATCTA
CCGTCACAGTAACCGAGTCCTTGGAGAGCACCTCCTGCGGCGGCACGTCA
AAGGAGACGGTGCGCAGATCCCCGGAT
BO17774.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33253-PA | 1104 | CG33253-RA | 399..1101 | 721..19 | 3515 | 100 | Minus |
CG7635-PA | 1053 | Mec2-RA | 829..929 | 276..176 | 180 | 87.1 | Minus |
CG7635-PA | 1053 | Mec2-RA | 635..689 | 470..416 | 150 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33253-RB | 1733 | CG33253-RB | 516..1225 | 727..19 | 3525 | 99.9 | Minus |
CG33253-RC | 2410 | CG33253-RC | 1193..1902 | 727..19 | 3525 | 99.9 | Minus |
CG33253-RA | 1733 | CG33253-RA | 516..1225 | 727..19 | 3525 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19185907..19186206 | 721..422 | 1500 | 100 | Minus |
X | 23542271 | X | 19186532..19186770 | 257..19 | 1195 | 100 | Minus |
X | 23542271 | X | 19186278..19186443 | 421..256 | 830 | 100 | Minus |
X | 23542271 | X | 19189248..19189547 | 721..422 | 480 | 77.3 | Minus |
X | 23542271 | X | 19189882..19189964 | 258..176 | 250 | 86.7 | Minus |
X | 23542271 | X | 19189640..19189805 | 421..256 | 245 | 76.5 | Minus |
3L | 28110227 | 3L | 4589824..4589922 | 384..286 | 210 | 80.8 | Minus |
Blast to na_te.dros performed 2015-02-10 21:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2403..2550 | 156..15 | 223 | 64.7 | Minus |
BO17774.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:55 Download gff for
BO17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-PA | 392..1104 | 16..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:09:01 Download gff for
BO17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-RA | 516..1232 | 12..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:10 Download gff for
BO17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-RA | 516..1232 | 12..727 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:10 Download gff for
BO17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19186278..19186443 | 256..421 | 100 | -> | Minus |
X | 19186534..19186777 | 12..255 | 98 | | Minus |
X | 19185900..19186206 | 422..727 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:09:01 Download gff for
BO17774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19079933..19080239 | 422..727 | 99 | -> | Minus |
arm_X | 19080311..19080476 | 256..421 | 100 | -> | Minus |
arm_X | 19080567..19080810 | 12..255 | 98 | | Minus |
BO17774.5prime Sequence
671 bp (670 high quality bases) assembled on 2006-10-13
> BO17774.5prime
GAAGTTATCAGTCGACATGCATCCTGCCTCGCCGCATCAGCACCGCGCCC
GCCTGCATGTCGGATCGCCAGGATCGGGTGGCATACAGGCCTCCTCCTCC
ACGGAGACCTTCCCACTCACTCCGCAGCACCAGTCCTCGCAGCACGCCGT
TCACATCCCGCCGCCCCCCTCCCTGCCCTACCAGGGACTCAAGACCTCTG
AAAACGATGACATGGGCTGCGTGGAGATCCTGGCCACGGTGGTGTCCGTG
CTGATCATGGTGCTAACCTTTCCCATCTCGGTGTTCATCTGCTTCAAGGT
GGTCTCCGAGTACGAGCGAGCGGTGATCTTCCGGATGGGGCGACTGCGCA
GCGGCGGAGCCCGTGGTCCCGGGGTCTTCTTTGTGCTGCCCTGCGTGGAC
GACTACTATCCGGTGGATCTGCGCACCGTCTCCTTTGACGTGCCGCCGCA
GGAGGTGCTCTCCAAGGACTCGGTTACTGTGACGGTAGATGCGGTTGTCT
ACTACCGCATCAGCGATCCCCTCAAGGCGGTCATCCAGGTGTACAATTAC
AGCCATTCGACGAGTCTCCTGGCGGCCACCACGCTGCGCAATGTGCTCGG
CACCAGGAATCTGTCCGAGCTGCTGACCGAACGCGAGACCATCTCGCACA
CCATGCAGATGTCCCTGGACG
BO17774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33253-PA | 1104 | CG33253-RA | 1..655 | 17..671 | 3275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33253-RB | 1733 | CG33253-RB | 125..779 | 17..671 | 3275 | 100 | Plus |
CG33253-RA | 1733 | CG33253-RA | 125..779 | 17..671 | 3275 | 100 | Plus |
CG33253-RC | 2410 | CG33253-RC | 983..1456 | 198..671 | 2370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19185690..19186163 | 198..671 | 2370 | 100 | Plus |
X | 23542271 | X | 19183545..19183725 | 17..197 | 905 | 100 | Plus |
X | 23542271 | X | 19189120..19189473 | 284..640 | 535 | 77.3 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:41:51 has no hits.
BO17774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:55 Download gff for
BO17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-PA | 1..655 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:19 Download gff for
BO17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-RA | 125..779 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:25 Download gff for
BO17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-RA | 125..779 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:25 Download gff for
BO17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19183545..19183725 | 17..197 | 100 | -> | Plus |
X | 19185690..19186163 | 198..671 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:19 Download gff for
BO17774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19077578..19077758 | 17..197 | 100 | -> | Plus |
arm_X | 19079723..19080196 | 198..671 | 100 | | Plus |
BO17774.complete Sequence
1135 bp assembled on 2006-10-11
GenBank Submission: FJ634211
> BO17774.complete
GAAGTTATCAGTCGACATGCATCCTGCCTCGCCGCATCAGCACCGCGCCC
GCCTGCATGTCGGATCGCCAGGATCGGGTGGCATACAGGCCTCCTCCTCC
ACGGAGACCTTCCCACTCACTCCGCAGCACCAGTCCTCGCAGCACGCCGT
TCACATCCCGCCGCCCCCCTCCCTGCCCTACCAGGGACTCAAGACCTCTG
AAAACGATGACATGGGCTGCGTGGAGATCCTGGCCACGGTGGTGTCCGTG
CTGATCATGGTGCTAACCTTTCCCATCTCGGTGTTCATCTGCTTCAAGGT
GGTCTCCGAGTACGAGCGAGCGGTGATCTTCCGGATGGGGCGACTGCGCA
GCGGCGGAGCCCGTGGTCCCGGGGTCTTCTTTGTGCTGCCCTGCGTGGAC
GACTACTATCCGGTGGATCTGCGCACCGTCTCCTTTGACGTGCCGCCGCA
GGAGGTGCTCTCCAAGGACTCGGTTACTGTGACGGTAGATGCGGTTGTCT
ACTACCGCATCAGCGATCCCCTCAAGGCGGTCATCCAGGTGTACAATTAC
AGCCATTCGACGAGTCTCCTGGCGGCCACCACGCTGCGCAATGTGCTCGG
CACCAGGAATCTGTCCGAGCTGCTGACCGAACGCGAGACCATCTCGCACA
CCATGCAGATGTCCCTGGACGAGGCCACCGATCCCTGGGGCGTTAAGGTG
GAGCGCGTGGAGATCAAGGACGTATCCTTGCCAACTGCCCTCCAGCGGGC
GATGGCCGCCGAGGCGGAGGCAGCGAGGGAGGCGCGGGCCAAGGTCATTG
CCGCCGAGGGCGAGATGAAGTCGTCGAGGGCTCTGCGCGAGGCTTCCGAG
ATCATCTCGGCCAGTCCATCCGCCCTGCAGTTGCGATACTTGCAAACACT
GAGCAGCATTTCAACCGAGAAGAATTCGACCATCATCTTCCCGCTGCCCA
TGGAGCTGCTCACGCCCTTCCTGAATACCCAAGCACACTCGCAGCAGCTG
CAACTGCAACACCAGCAGCAGCTGCAACAGCAACAGCAGCAGCATCAGCA
CCAACAACAACAACATCCTGCGGCTCCTGGCACGCCACTCCATCGACACC
CGCACCAACACCACCAGGCAAGCTTTCTAGACCAT
BO17774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33253-RB | 1245 | CG33253-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
CG33253-RA | 1104 | CG33253-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
CG33253-RC | 909 | CG33253-PC | 1..906 | 212..1117 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33253-RB | 1733 | CG33253-RB | 125..1225 | 17..1117 | 5505 | 100 | Plus |
CG33253-RA | 1733 | CG33253-RA | 125..1225 | 17..1117 | 5505 | 100 | Plus |
CG33253-RC | 2410 | CG33253-RC | 983..1902 | 198..1117 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19185690..19186206 | 198..714 | 2585 | 100 | Plus |
X | 23542271 | X | 19186532..19186770 | 879..1117 | 1195 | 100 | Plus |
X | 23542271 | X | 19183545..19183725 | 17..197 | 905 | 100 | Plus |
X | 23542271 | X | 19186278..19186443 | 715..880 | 830 | 100 | Plus |
X | 23542271 | X | 19189120..19189547 | 284..714 | 650 | 77.3 | Plus |
X | 23542271 | X | 19189882..19189964 | 878..960 | 250 | 86.7 | Plus |
X | 23542271 | X | 19189640..19189805 | 715..880 | 245 | 76.5 | Plus |
3L | 28110227 | 3L | 4589824..4589922 | 752..850 | 210 | 80.8 | Plus |
Blast to na_te.dros performed 2014-11-27 07:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2403..2550 | 980..1121 | 223 | 64.7 | Plus |
BO17774.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:52 Download gff for
BO17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-RA | 1..1104 | 17..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:32 Download gff for
BO17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-RA | 122..1229 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:52 Download gff for
BO17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-RA | 125..1225 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:52 Download gff for
BO17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-RA | 122..1229 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:17 Download gff for
BO17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33253-RA | 125..1225 | 17..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:17 Download gff for
BO17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19183545..19183725 | 17..197 | 100 | -> | Plus |
X | 19185690..19186206 | 198..714 | 100 | -> | Plus |
X | 19186278..19186443 | 715..880 | 100 | -> | Plus |
X | 19186534..19186770 | 881..1119 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:52 Download gff for
BO17774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19077578..19077758 | 17..197 | 100 | -> | Plus |
arm_X | 19079723..19080239 | 198..714 | 100 | -> | Plus |
arm_X | 19080311..19080476 | 715..880 | 100 | -> | Plus |
arm_X | 19080567..19080803 | 881..1119 | 99 | | Plus |
BO17774.pep Sequence
Translation from 16 to 1135
> BO17774.pep
MHPASPHQHRARLHVGSPGSGGIQASSSTETFPLTPQHQSSQHAVHIPPP
PSLPYQGLKTSENDDMGCVEILATVVSVLIMVLTFPISVFICFKVVSEYE
RAVIFRMGRLRSGGARGPGVFFVLPCVDDYYPVDLRTVSFDVPPQEVLSK
DSVTVTVDAVVYYRISDPLKAVIQVYNYSHSTSLLAATTLRNVLGTRNLS
ELLTERETISHTMQMSLDEATDPWGVKVERVEIKDVSLPTALQRAMAAEA
EAAREARAKVIAAEGEMKSSRALREASEIISASPSALQLRYLQTLSSIST
EKNSTIIFPLPMELLTPFLNTQAHSQQLQLQHQQQLQQQQQQHQHQQQQH
PAAPGTPLHRHPHQHHQASFLDH
BO17774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33253-PA | 367 | CG33253-PA | 1..367 | 1..367 | 1876 | 100 | Plus |
CG33253-PB | 414 | CG33253-PB | 1..367 | 1..367 | 1876 | 100 | Plus |
CG33253-PC | 302 | CG33253-PC | 1..302 | 66..367 | 1521 | 100 | Plus |
Mec2-PA | 350 | CG7635-PA | 45..319 | 49..324 | 1064 | 76.1 | Plus |
CG42540-PH | 393 | CG42540-PH | 49..381 | 58..367 | 952 | 61.3 | Plus |