Clone BO17776 Report

Search the DGRC for BO17776

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG13912-RA
Protein status:BO17776.pep: validated full length
Sequenced Size:520

Clone Sequence Records

BO17776.5prime Sequence

518 bp (518 high quality bases) assembled on 2006-10-13

> BO17776.5prime
GAAGTTATCAGTCGACATGATGTCACATACTGTGAGGGTCTTCAAGATGA
TGTACATTGTGGCGGGCATCCTCATCAGCAATGCGGAGATCTGCGACACA
GTGGACCGCATCCAGATAGCGCCACGCGTCGACCTCAAGCCGGAATACGA
TCACAGGTACTTGACCTCCGGAGGCAATAGTCCCGGCTCCCGATCCCGCA
CCCACTCTCGACAGAATTCCGGAAGTGGATCCGGATCGGAGGAAGGATCC
CCCACCAAGAGGCGGAGAGTCAGCGTTTCCGGTATCGCGGGGGGCGTGGT
CAGGGGCGTCACTAGCCAGGTCACCAAGAGAGTGGGCCACCGCTTCGTCT
GGCTATCCGACATCCGGCTCATTCTCCGGCAATGGCGACTCCTGGCCCTC
AGCTTCAACCTCTGGACCATTCCCAACTTCTTGGTGCAGTGCCTCACCAG
CTACATGAGCAAGAAGCTGCTCATCAATAGCGACTGTGATATGATCTACA
AGGCAAGCTTTCTAGACC

BO17776.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-PA 489 CG13912-RA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-RA 818 CG13912-RA 218..703 17..502 2430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1189890..1190357 35..502 2340 100 Plus
Blast to na_te.dros performed on 2015-02-05 01:30:44 has no hits.

BO17776.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:58 Download gff for BO17776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-PA 1..489 17..503 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:29 Download gff for BO17776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 210..710 9..510 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:40 Download gff for BO17776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 210..710 9..510 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:40 Download gff for BO17776.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1189892..1190364 37..510 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:29 Download gff for BO17776.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1189892..1190364 37..510 99   Plus

BO17776.3prime Sequence

518 bp (518 high quality bases) assembled on 2006-10-13

> BO17776.3prime
ATGGTCTAGAAAGCTTGCCTTGTAGATCATATCACAGTCGCTATTGATGA
GCAGCTTCTTGCTCATGTAGCTGGTGAGGCACTGCACCAAGAAGTTGGGA
ATGGTCCAGAGGTTGAAGCTGAGGGCCAGGAGTCGCCATTGCCGGAGAAT
GAGCCGGATGTCGGATAGCCAGACGAAGCGGTGGCCCACTCTCTTGGTGA
CCTGGCTAGTGACGCCCCTGACCACGCCCCCCGCGATACCGGAAACGCTG
ACTCTCCGCCTCTTGGTGGGGGATCCTTCCTCCGATCCGGATCCACTTCC
GGAATTCTGTCGAGAGTGGGTGCGGGATCGGGAGCCGGGACTATTGCCTC
CGGAGGTCAAGTACCTGTGATCGTATTCCGGCTTGAGGTCGACGCGTGGC
GCTATCTGGATGCGGTCCACTGTGTCGCAGATCTCCGCATTGCTGATGAG
GATGCCCGCCACAATGTACATCATCTTGAAGACCCTCACAGTATGTGACA
TCATGTCGACTGATAACT

BO17776.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-PA 489 CG13912-RA 1..486 504..19 2430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-RA 818 CG13912-RA 218..703 504..19 2430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1189890..1190357 486..19 2340 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:02:22 has no hits.

BO17776.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:57 Download gff for BO17776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-PA 1..489 18..504 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:06:42 Download gff for BO17776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 210..710 11..512 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:31:17 Download gff for BO17776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 210..710 11..512 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:31:17 Download gff for BO17776.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1189892..1190364 11..484 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:06:42 Download gff for BO17776.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1189892..1190364 11..484 99   Minus

BO17776.complete Sequence

520 bp assembled on 2007-10-17

GenBank Submission: FJ634212

> BO17776.complete
GAAGTTATCAGTCGACATGATGTCACATACTGTGAGGGTCTTCAAGATGA
TGTACATTGTGGCGGGCATCCTCATCAGCAATGCGGAGATCTGCGACACA
GTGGACCGCATCCAGATAGCGCCACGCGTCGACCTCAAGCCGGAATACGA
TCACAGGTACTTGACCTCCGGAGGCAATAGTCCCGGCTCCCGATCCCGCA
CCCACTCTCGACAGAATTCCGGAAGTGGATCCGGATCGGAGGAAGGATCC
CCCACCAAGAGGCGGAGAGTCAGCGTTTCCGGTATCGCGGGGGGCGTGGT
CAGGGGCGTCACTAGCCAGGTCACCAAGAGAGTGGGCCACCGCTTCGTCT
GGCTATCCGACATCCGGCTCATTCTCCGGCAATGGCGACTCCTGGCCCTC
AGCTTCAACCTCTGGACCATTCCCAACTTCTTGGTGCAGTGCCTCACCAG
CTACATGAGCAAGAAGCTGCTCATCAATAGCGACTGTGATATGATCTACA
AGGCAAGCTTTCTAGACCAT

BO17776.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-RA 489 CG13912-PA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-RA 818 CG13912-RA 218..703 17..502 2430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1189890..1190357 35..502 2340 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:09:52 has no hits.

BO17776.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:36 Download gff for BO17776.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 1..489 17..503 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:22 Download gff for BO17776.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 208..704 9..503 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:55 Download gff for BO17776.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 218..703 17..504 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:16 Download gff for BO17776.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 216..701 17..504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:19 Download gff for BO17776.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 218..703 17..504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:19 Download gff for BO17776.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1189805..1189824 17..36 100 -> Plus
3L 1189892..1190357 37..504 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:55 Download gff for BO17776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1189805..1189824 17..36 100 -> Plus
arm_3L 1189892..1190357 37..504 99   Plus

BO17776.pep Sequence

Translation from 16 to 520

> BO17776.pep
MMSHTVRVFKMMYIVAGILISNAEICDTVDRIQIAPRVDLKPEYDHRYLT
SGGNSPGSRSRTHSRQNSGSGSGSEEGSPTKRRRVSVSGIAGGVVRGVTS
QVTKRVGHRFVWLSDIRLILRQWRLLALSFNLWTIPNFLVQCLTSYMSKK
LLINSDCDMIYKASFLDH

BO17776.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-PA 162 CG13912-PA 1..162 1..162 837 100 Plus