Clone Sequence Records
BO17776.5prime Sequence
518 bp (518 high quality bases) assembled on 2006-10-13
> BO17776.5prime
GAAGTTATCAGTCGACATGATGTCACATACTGTGAGGGTCTTCAAGATGA
TGTACATTGTGGCGGGCATCCTCATCAGCAATGCGGAGATCTGCGACACA
GTGGACCGCATCCAGATAGCGCCACGCGTCGACCTCAAGCCGGAATACGA
TCACAGGTACTTGACCTCCGGAGGCAATAGTCCCGGCTCCCGATCCCGCA
CCCACTCTCGACAGAATTCCGGAAGTGGATCCGGATCGGAGGAAGGATCC
CCCACCAAGAGGCGGAGAGTCAGCGTTTCCGGTATCGCGGGGGGCGTGGT
CAGGGGCGTCACTAGCCAGGTCACCAAGAGAGTGGGCCACCGCTTCGTCT
GGCTATCCGACATCCGGCTCATTCTCCGGCAATGGCGACTCCTGGCCCTC
AGCTTCAACCTCTGGACCATTCCCAACTTCTTGGTGCAGTGCCTCACCAG
CTACATGAGCAAGAAGCTGCTCATCAATAGCGACTGTGATATGATCTACA
AGGCAAGCTTTCTAGACC
BO17776.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-PA | 489 | CG13912-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-RA | 818 | CG13912-RA | 218..703 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1189890..1190357 | 35..502 | 2340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 01:30:44 has no hits.
BO17776.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:58 Download gff for
BO17776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-PA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:29 Download gff for
BO17776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 210..710 | 9..510 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:40 Download gff for
BO17776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 210..710 | 9..510 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:40 Download gff for
BO17776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1189892..1190364 | 37..510 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:29 Download gff for
BO17776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1189892..1190364 | 37..510 | 99 | | Plus |
BO17776.3prime Sequence
518 bp (518 high quality bases) assembled on 2006-10-13
> BO17776.3prime
ATGGTCTAGAAAGCTTGCCTTGTAGATCATATCACAGTCGCTATTGATGA
GCAGCTTCTTGCTCATGTAGCTGGTGAGGCACTGCACCAAGAAGTTGGGA
ATGGTCCAGAGGTTGAAGCTGAGGGCCAGGAGTCGCCATTGCCGGAGAAT
GAGCCGGATGTCGGATAGCCAGACGAAGCGGTGGCCCACTCTCTTGGTGA
CCTGGCTAGTGACGCCCCTGACCACGCCCCCCGCGATACCGGAAACGCTG
ACTCTCCGCCTCTTGGTGGGGGATCCTTCCTCCGATCCGGATCCACTTCC
GGAATTCTGTCGAGAGTGGGTGCGGGATCGGGAGCCGGGACTATTGCCTC
CGGAGGTCAAGTACCTGTGATCGTATTCCGGCTTGAGGTCGACGCGTGGC
GCTATCTGGATGCGGTCCACTGTGTCGCAGATCTCCGCATTGCTGATGAG
GATGCCCGCCACAATGTACATCATCTTGAAGACCCTCACAGTATGTGACA
TCATGTCGACTGATAACT
BO17776.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-PA | 489 | CG13912-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-RA | 818 | CG13912-RA | 218..703 | 504..19 | 2430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1189890..1190357 | 486..19 | 2340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:02:22 has no hits.
BO17776.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:57 Download gff for
BO17776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-PA | 1..489 | 18..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:06:42 Download gff for
BO17776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 210..710 | 11..512 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:31:17 Download gff for
BO17776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 210..710 | 11..512 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:31:17 Download gff for
BO17776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1189892..1190364 | 11..484 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:06:42 Download gff for
BO17776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1189892..1190364 | 11..484 | 99 | | Minus |
BO17776.complete Sequence
520 bp assembled on 2007-10-17
GenBank Submission: FJ634212
> BO17776.complete
GAAGTTATCAGTCGACATGATGTCACATACTGTGAGGGTCTTCAAGATGA
TGTACATTGTGGCGGGCATCCTCATCAGCAATGCGGAGATCTGCGACACA
GTGGACCGCATCCAGATAGCGCCACGCGTCGACCTCAAGCCGGAATACGA
TCACAGGTACTTGACCTCCGGAGGCAATAGTCCCGGCTCCCGATCCCGCA
CCCACTCTCGACAGAATTCCGGAAGTGGATCCGGATCGGAGGAAGGATCC
CCCACCAAGAGGCGGAGAGTCAGCGTTTCCGGTATCGCGGGGGGCGTGGT
CAGGGGCGTCACTAGCCAGGTCACCAAGAGAGTGGGCCACCGCTTCGTCT
GGCTATCCGACATCCGGCTCATTCTCCGGCAATGGCGACTCCTGGCCCTC
AGCTTCAACCTCTGGACCATTCCCAACTTCTTGGTGCAGTGCCTCACCAG
CTACATGAGCAAGAAGCTGCTCATCAATAGCGACTGTGATATGATCTACA
AGGCAAGCTTTCTAGACCAT
BO17776.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-RA | 489 | CG13912-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-RA | 818 | CG13912-RA | 218..703 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1189890..1190357 | 35..502 | 2340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:09:52 has no hits.
BO17776.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:36 Download gff for
BO17776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:22 Download gff for
BO17776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 208..704 | 9..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:55 Download gff for
BO17776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 218..703 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:16 Download gff for
BO17776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 216..701 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:19 Download gff for
BO17776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 218..703 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:19 Download gff for
BO17776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1189805..1189824 | 17..36 | 100 | -> | Plus |
3L | 1189892..1190357 | 37..504 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:55 Download gff for
BO17776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1189805..1189824 | 17..36 | 100 | -> | Plus |
arm_3L | 1189892..1190357 | 37..504 | 99 | | Plus |
BO17776.pep Sequence
Translation from 16 to 520
> BO17776.pep
MMSHTVRVFKMMYIVAGILISNAEICDTVDRIQIAPRVDLKPEYDHRYLT
SGGNSPGSRSRTHSRQNSGSGSGSEEGSPTKRRRVSVSGIAGGVVRGVTS
QVTKRVGHRFVWLSDIRLILRQWRLLALSFNLWTIPNFLVQCLTSYMSKK
LLINSDCDMIYKASFLDH
BO17776.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-PA | 162 | CG13912-PA | 1..162 | 1..162 | 837 | 100 | Plus |