Clone Sequence Records
BO17777.3prime Sequence
837 bp (730 high quality bases) assembled on 2006-10-13
> BO17777.3prime
ATGGTCTAGAAAGCTTGCGACTTCAGCCAGATTGCGAATAATCTTCTTGT
ACACATCAATGCCATTAAGATACACATCAGCCTGCAGAAACTCGTCGTGG
TCATGGATCCGCATGGTGGTGTTTATAATGGGTGAGAATCCAATGGCTGG
GGTACCCTTCTCCCGAATGAAACGACTGTCAGTGGCGCCAGGACAAACGA
TGGGATGAACCTTCAATCCAAGCTCATCGATTGCGGCTTTGACAGCTAGC
CAGTAGGGATTGGAATTGTCCAGCTTGGTGGGTCCTATATAAGGCTCCTT
CTGGAAGAAATCAATTTCAATGCCACCACCCGCCTCCTCGCACCAATCGC
GAATCTGTTTCTCAAAGGCAACCACATTCACAGTAATGGCAATCCGTATG
TCGAAGACCGCCTCGAAAAGTGGCGGAACCACATTGCTCTGGACTCCGCC
ACTTAACTGGGTGAGATTCACGGTGGTCACATCGCCCTTGCTGAGGCTGG
AATCTCTCGCAAGGTTCTCCACTTGCGAGGTGCGGAATTCAGTCAGTTTG
TTGACCAGATAGTTCAGTTTTACTCCTGCCGTATTGGGTAGCAAAAGGGA
ACCATGACCAGAAGTTCCACTGACTTTCAGCTTGAGTCCCCATCGCAAAC
GTTCGGCGTAGAACAAATGATGAACGTCACTTTCACTAGTGGCGCCTTCG
TCCAGGCTGAATCCCGCGTTCATTTTCTTGTAGTAATCCGTCTTAACAAA
CTCCGCCATGCCCAGATGACCACCAGTCTCTTCGTCGGGAACAAAGTCAC
ATACAAATTCCTTTTTGGTTTGAGCCACTAGCTTTCA
BO17777.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6733-PA | 1206 | CG6733-RA | 426..1203 | 796..19 | 3890 | 100 | Minus |
| CG6738-PA | 1206 | CG6738-RA | 739..797 | 483..425 | 220 | 94.9 | Minus |
| CG17109-PA | 1203 | CG17109-RA | 842..899 | 377..320 | 190 | 93.1 | Minus |
| CG6726-PB | 1206 | CG6726-RB | 852..906 | 370..316 | 150 | 90.9 | Minus |
| CG6726-PA | 1206 | CG6726-RA | 852..906 | 370..316 | 150 | 90.9 | Minus |
| CG6733-PA | 1206 | CG6733-RA | 398..425 | 823..796 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6733-RA | 1291 | CG6733-RA | 414..1234 | 837..19 | 4055 | 99.8 | Minus |
| CG17109-RB | 1373 | CG17109-RB | 466..1173 | 796..89 | 995 | 76.5 | Minus |
| CG17109-RA | 1313 | CG17109-RA | 466..1173 | 796..89 | 995 | 76.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23098457..23098875 | 639..221 | 2095 | 100 | Minus |
| 3R | 32079331 | 3R | 23098933..23099134 | 220..19 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 23098198..23098399 | 837..638 | 910 | 99 | Minus |
| 3R | 32079331 | 3R | 23096434..23096846 | 636..224 | 625 | 76.8 | Minus |
| 3R | 32079331 | 3R | 23100266..23100669 | 636..233 | 520 | 75.2 | Minus |
| 3R | 32079331 | 3R | 23092616..23092923 | 623..316 | 445 | 76.3 | Minus |
| 3R | 32079331 | 3R | 23100779..23100936 | 176..19 | 295 | 79.1 | Minus |
| 3R | 32079331 | 3R | 23100053..23100209 | 796..640 | 230 | 76.4 | Minus |
| 3R | 32079331 | 3R | 10676298..10676362 | 559..623 | 190 | 86.2 | Plus |
| 3R | 32079331 | 3R | 23096979..23097040 | 150..89 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:48:30 has no hits.
BO17777.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:12:59 Download gff for
BO17777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-PA | 384..1206 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:45 Download gff for
BO17777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 415..1237 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:41 Download gff for
BO17777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 415..1237 | 15..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:41 Download gff for
BO17777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23098933..23099137 | 15..220 | 99 | | Minus |
| 3R | 23098199..23098398 | 639..836 | 99 | -> | Minus |
| 3R | 23098458..23098875 | 221..638 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:45 Download gff for
BO17777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18923921..18924120 | 639..836 | 99 | -> | Minus |
| arm_3R | 18924180..18924597 | 221..638 | 100 | -> | Minus |
| arm_3R | 18924655..18924859 | 15..220 | 99 | | Minus |
BO17777.5prime Sequence
879 bp (791 high quality bases) assembled on 2006-10-13
> BO17777.5prime
GAAGTTATCAGTCGACATGAGCTCGGAAAAGTGGGAAAACAATGAGGAAA
TTAAGATTTTCCGGGAATACTTGCGTATACCAACGGTGCATCCAGATGTT
GACTATACTGCCTGTGTGGAGTTCCTGAAACGTCAGGCTAGCTCCCTAAA
TCTTCCTGTTGAAGTGGTTTATCCTGCTGTTCAAACGAAGCCCGTTGTGA
TCATCAAGTGGGAAGGAAGTCAACCCGAACTATCGTCCATTGTTCTCAAC
TCTCACACGGATGTGGTGCCAGTTTTTCGAGAGAAGTGGACCCATGAACC
CTTCTCCGCCGATATTGATGAAGAGGGTAGGATCTTTGCACGGGGTACTC
AGGACATGAAATCGGTGGGCACTCAGTATCTAGGAGCGATTCGCCTGCTG
AAAGCTAGTGGCTTCAAACCAAAAAGGAATTTGTATGTGACCTTTGTTCC
CGACGAAGAGACTGGTGGTCATCTGGGCATGGCGGAGTTTGTTAAGACGG
ATTACTACAAGAAAATGAACGCGGGATTCAGCCTGGACGAAGGCGCCACT
AGTGAAAGTGACGTTCATCATTTGTTCTACGCCGAACGTTTGCGATGGGG
ACTCAAGCTGAAAGTCAGTGGAACTTCTGGTCATGGTTCCCTTTTGCTAC
CCAATACGGCAGGAGTAAAACTGAACTATCTGGTCAACAAACTGACTGAA
TTCCGCACCTCGCAAGTGGAGAACCTTGCGAGAGATTCCAGCCTCAGCAA
GGGCGATGTGACCACCGTGAATCTCACCCAGTTAAGTGGCGGAGTCCAGA
GCAATGTGGTTCCGCCACTTTTCGAGGCGGTCTTCGACATACGGATTGCC
ATTACTGTGAATGTGGTTGCCTTTGAGAA
BO17777.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6733-PA | 1206 | CG6733-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
| CG6738-PA | 1206 | CG6738-RA | 270..385 | 286..401 | 380 | 93.1 | Plus |
| CG6738-PA | 1206 | CG6738-RA | 739..797 | 755..813 | 220 | 94.9 | Plus |
| CG17109-PA | 1203 | CG17109-RA | 265..353 | 284..372 | 195 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6733-RA | 1291 | CG6733-RA | 26..894 | 11..879 | 4330 | 99.9 | Plus |
| CG6738-RA | 1291 | CG6738-RA | 51..902 | 26..877 | 1320 | 77.4 | Plus |
| CG17109-RB | 1373 | CG17109-RB | 44..903 | 17..879 | 1270 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23097907..23098399 | 108..600 | 2465 | 100 | Plus |
| 3R | 32079331 | 3R | 23098457..23098737 | 599..879 | 1405 | 100 | Plus |
| 3R | 32079331 | 3R | 23099719..23100209 | 108..598 | 820 | 77.8 | Plus |
| 3R | 32079331 | 3R | 23095888..23096372 | 113..600 | 635 | 75.8 | Plus |
| 3R | 32079331 | 3R | 23097753..23097849 | 11..107 | 470 | 99 | Plus |
| 3R | 32079331 | 3R | 23096434..23096711 | 602..879 | 430 | 77 | Plus |
| 3R | 32079331 | 3R | 23100266..23100541 | 602..877 | 390 | 76.1 | Plus |
| 3R | 32079331 | 3R | 23092184..23092479 | 236..531 | 325 | 74 | Plus |
| 3R | 32079331 | 3R | 23092616..23092880 | 615..879 | 305 | 74.3 | Plus |
| 3R | 32079331 | 3R | 10676298..10676362 | 679..615 | 190 | 86.2 | Minus |
| 3R | 32079331 | 3R | 23091883..23091953 | 29..99 | 190 | 84.5 | Plus |
| 3R | 32079331 | 3R | 23095733..23095815 | 17..99 | 190 | 81.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:47:19 has no hits.
BO17777.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:00 Download gff for
BO17777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:46:00 Download gff for
BO17777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 26..894 | 11..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:05:58 Download gff for
BO17777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 26..894 | 11..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:05:58 Download gff for
BO17777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23098458..23098737 | 600..879 | 100 | | Plus |
| 3R | 23097753..23097849 | 11..107 | 98 | -> | Plus |
| 3R | 23097907..23098398 | 108..599 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:46:00 Download gff for
BO17777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18923475..18923571 | 11..107 | 98 | -> | Plus |
| arm_3R | 18923629..18924120 | 108..599 | 100 | -> | Plus |
| arm_3R | 18924180..18924459 | 600..879 | 100 | | Plus |
BO17777.complete Sequence
1237 bp assembled on 2006-10-11
GenBank Submission: FJ634213
> BO17777.complete
GAAGTTATCAGTCGACATGAGCTCGGAAAAGTGGGAAAACAATGAGGAAA
TTAAGATTTTCCGGGAATACTTGCGTATACCAACGGTGCATCCAGATGTT
GACTATACTGCCTGTGTGGAGTTCCTGAAACGTCAGGCTAGCTCCCTAAA
TCTTCCTGTTGAAGTGGTTTATCCTGCTGTTCAAACGAAGCCCGTTGTGA
TCATCAAGTGGGAAGGAAGTCAACCCGAACTATCGTCCATTGTTCTCAAC
TCTCACACGGATGTGGTGCCAGTTTTTCGAGAGAAGTGGACCCATGAACC
CTTCTCCGCCGATATTGATGAAGAGGGTAGGATCTTTGCACGGGGTACTC
AGGACATGAAATCGGTGGGCACTCAGTATCTAGGAGCGATTCGCCTGCTG
AAAGCTAGTGGCTTCAAACCAAAAAGGAATTTGTATGTGACCTTTGTTCC
CGACGAAGAGACTGGTGGTCATCTGGGCATGGCGGAGTTTGTTAAGACGG
ATTACTACAAGAAAATGAACGCGGGATTCAGCCTGGACGAAGGCGCCACT
AGTGAAAGTGACGTTCATCATTTGTTCTACGCCGAACGTTTGCGATGGGG
ACTCAAGCTGAAAGTCAGTGGAACTTCTGGTCATGGTTCCCTTTTGCTAC
CCAATACGGCAGGAGTAAAACTGAACTATCTGGTCAACAAACTGACTGAA
TTCCGCACCTCGCAAGTGGAGAACCTTGCGAGAGATTCCAGCCTCAGCAA
GGGCGATGTGACCACCGTGAATCTCACCCAGTTAAGTGGCGGAGTCCAGA
GCAATGTGGTTCCGCCACTTTTCGAGGCGGTCTTCGACATACGGATTGCC
ATTACTGTGAATGTGGTTGCCTTTGAGAAACAGATTCGCGATTGGTGCGA
GGAGGCGGGTGGTGGCATTGAAATTGATTTCTTCCAGAAGGAGCCTTATA
TAGGACCCACCAAGCTGGACAATTCCAATCCCTACTGGCTAGCTGTCAAA
GCCGCAATCGATGAGCTTGGATTGAAGGTTCATCCCATCGTTTGTCCTGG
CGCCACTGACAGTCGTTTCATTCGGGAGAAGGGTACCCCAGCCATTGGAT
TCTCACCCATTATAAACACCACCATGCGGATCCATGACCACGACGAGTTT
CTGCAGGCTGATGTGTATCTTAATGGCATTGATGTGTACAAGAAGATTAT
TCGCAATCTGGCTGAAGTCGCAAGCTTTCTAGACCAT
BO17777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6733-RA | 1206 | CG6733-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
| CG6738-RA | 1206 | CG6738-PA | 10..1203 | 26..1219 | 1680 | 76 | Plus |
| CG17109-RB | 1203 | CG17109-PB | 1..1130 | 17..1149 | 1580 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6733-RA | 1291 | CG6733-RA | 26..1234 | 11..1219 | 6030 | 99.9 | Plus |
| CG6738-RA | 1291 | CG6738-RA | 51..1244 | 26..1219 | 1680 | 76 | Plus |
| CG17109-RB | 1373 | CG17109-RB | 44..1173 | 17..1149 | 1580 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23097907..23098399 | 108..600 | 2465 | 100 | Plus |
| 3R | 32079331 | 3R | 23098457..23098875 | 599..1017 | 2095 | 100 | Plus |
| 3R | 32079331 | 3R | 23098933..23099134 | 1018..1219 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 23099719..23100209 | 108..598 | 820 | 77.8 | Plus |
| 3R | 32079331 | 3R | 23095888..23096372 | 113..600 | 635 | 75.8 | Plus |
| 3R | 32079331 | 3R | 23096434..23096846 | 602..1014 | 625 | 76.8 | Plus |
| 3R | 32079331 | 3R | 23100266..23100669 | 602..1005 | 520 | 75.2 | Plus |
| 3R | 32079331 | 3R | 23097753..23097849 | 11..107 | 470 | 99 | Plus |
| 3R | 32079331 | 3R | 23092616..23092923 | 615..922 | 445 | 76.3 | Plus |
| 3R | 32079331 | 3R | 23092184..23092479 | 236..531 | 325 | 74 | Plus |
| 3R | 32079331 | 3R | 23100779..23100936 | 1062..1219 | 295 | 79.1 | Plus |
| 3R | 32079331 | 3R | 23091883..23091953 | 29..99 | 190 | 84.5 | Plus |
| 3R | 32079331 | 3R | 23095733..23095815 | 17..99 | 190 | 81.9 | Plus |
| 3R | 32079331 | 3R | 23096979..23097040 | 1088..1149 | 190 | 87.1 | Plus |
| 3R | 32079331 | 3R | 10676298..10676362 | 679..615 | 190 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:27:51 has no hits.
BO17777.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:53 Download gff for
BO17777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 1..1206 | 17..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:34 Download gff for
BO17777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 22..1233 | 11..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:57 Download gff for
BO17777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 32..1234 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:53 Download gff for
BO17777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 22..1233 | 11..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:54 Download gff for
BO17777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6733-RA | 32..1234 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:54 Download gff for
BO17777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23097759..23097849 | 17..107 | 100 | -> | Plus |
| 3R | 23097907..23098398 | 108..599 | 100 | -> | Plus |
| 3R | 23098458..23098875 | 600..1017 | 100 | -> | Plus |
| 3R | 23098933..23099134 | 1018..1221 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:57 Download gff for
BO17777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18923481..18923571 | 17..107 | 100 | -> | Plus |
| arm_3R | 18923629..18924120 | 108..599 | 100 | -> | Plus |
| arm_3R | 18924180..18924597 | 600..1017 | 100 | -> | Plus |
| arm_3R | 18924655..18924856 | 1018..1221 | 99 | | Plus |
BO17777.pep Sequence
Translation from 16 to 1237
> BO17777.pep
MSSEKWENNEEIKIFREYLRIPTVHPDVDYTACVEFLKRQASSLNLPVEV
VYPAVQTKPVVIIKWEGSQPELSSIVLNSHTDVVPVFREKWTHEPFSADI
DEEGRIFARGTQDMKSVGTQYLGAIRLLKASGFKPKRNLYVTFVPDEETG
GHLGMAEFVKTDYYKKMNAGFSLDEGATSESDVHHLFYAERLRWGLKLKV
SGTSGHGSLLLPNTAGVKLNYLVNKLTEFRTSQVENLARDSSLSKGDVTT
VNLTQLSGGVQSNVVPPLFEAVFDIRIAITVNVVAFEKQIRDWCEEAGGG
IEIDFFQKEPYIGPTKLDNSNPYWLAVKAAIDELGLKVHPIVCPGATDSR
FIREKGTPAIGFSPIINTTMRIHDHDEFLQADVYLNGIDVYKKIIRNLAE
VASFLDH
BO17777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6733-PA | 401 | CG6733-PA | 1..401 | 1..401 | 2089 | 100 | Plus |
| CG6738-PA | 401 | CG6738-PA | 1..401 | 1..401 | 1700 | 79.3 | Plus |
| CG17109-PB | 400 | CG17109-PB | 1..400 | 1..401 | 1663 | 77.1 | Plus |
| CG17109-PA | 400 | CG17109-PA | 1..400 | 1..401 | 1663 | 77.1 | Plus |
| CG6726-PC | 401 | CG6726-PC | 1..400 | 1..400 | 1571 | 72 | Plus |
