Clone BO17779 Report

Search the DGRC for BO17779

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG5976-RA
Protein status:BO17779.pep: validated full length
Sequenced Size:1090

Clone Sequence Records

BO17779.3prime Sequence

772 bp (714 high quality bases) assembled on 2006-10-13

> BO17779.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCTCGGTTCCGGCCAGCAGATACTCCA
AAGCGAAGAGCCGTATAATCAGTGCCAGGTTGTCCGTCGTCGCATAATCG
ATCACGCTGGCGTTATCGTCGGGCGTATGCCATACACTGGGAAAGGGCAC
CGGAATGAGGTGCAAGATCGGCACATTTCGCCGCAGGAAGGGTATGTGAT
CGTCCTCGATGAAAGAGGATCGCATGGCCTGCGACTGGAAGTAGCGGGTG
GGGTCGCGCTGGGCAACTCCACTGCTGGCATAGCGCTCCAGGAGCTGCAA
CTTGGCAAGACGTGTCTCCACGGACTGGATACGCATGTACCAGGACTCGG
TGTTTTCGAAGAAGCTGTAGAATGCCGGATCGGGGGCTCCCAACAGATCC
AGGAGCACCAGCATATCTATTCTATCAAGTTTTCCTTCATGGTGCCACTT
TTTGGCCAGGTGTCGTGCTCCATAGATGGAGTCCTTGGGTCCCCACTCCT
CAAAAGCCTCCTCGCCATCGAAGAACAAGAGCATCAAACTCAGTTTGCTC
TTCTTGAGGGGTTTCAACTGCTCCTGAAGCACCTGGGCCAGGTTGAGGAG
CATGGCACAGGGCACTGCCGAGTCGGTGGCCCCCAGGAATTCCACTCCAG
GCATGTATTTGCTATCATAATGGCAGGACAGCACCAGATATCTCTCAGCA
TTTGGATTCAGGGTGGCGATGATGTTGTGGAAATGCAATTTGCCTTTGAT
GGGAGCGTGATCATGAAAGCTG

BO17779.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5976-PB 1065 CG5976-RB 309..1062 772..19 3770 100 Minus
CG5976-PA 1059 CG5976-RA 303..1056 772..19 3770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-RA 1975 CG5976-RA 728..1481 772..19 3770 100 Minus
isoQC-RB 1617 CG5976-RB 370..1123 772..19 3770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20475756..20476509 772..19 3770 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:59:00 has no hits.

BO17779.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:03 Download gff for BO17779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5976-PA 303..1059 18..772 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:09:03 Download gff for BO17779.3prime
Subject Subject Range Query Range Percent Splice Strand
isoQC-RB 370..1123 19..772 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:14 Download gff for BO17779.3prime
Subject Subject Range Query Range Percent Splice Strand
isoQC-RB 370..1123 19..772 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:14 Download gff for BO17779.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20475756..20476509 19..772 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:09:03 Download gff for BO17779.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20468856..20469609 19..772 100   Minus

BO17779.5prime Sequence

760 bp (705 high quality bases) assembled on 2006-10-13

> BO17779.5prime
GAAGTTATCAGTCGACATGCTACATCGAACAGCTAGAATGTGGACGCTGT
GCGTGCAGACAGCTTTGATAGCCACCTTGGTGAGGGGATCCACTTCCCAG
AAGGATAATCTCGTAGGAAGAACACAGATATCCTACAATCCCAGCGAGCT
CTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACACC
TAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAACA
AATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCTAGA
CTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGCA
AATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAGA
TATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGGA
ATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAACC
TGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACTG
AGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGGG
ACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCACC
ATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTTG
GGAGCCCCCGATCCGGCATTCTACAGCTTTCTTCGAAAACACCGAGTCCT
GGTACATGCG

BO17779.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5976-PA 1059 CG5976-RA 1..713 17..729 3565 100 Plus
CG5976-PB 1065 CG5976-RB 116..719 126..729 3020 100 Plus
CG5976-PA 1059 CG5976-RA 712..743 729..760 160 100 Plus
CG5976-PB 1065 CG5976-RB 718..749 729..760 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-RA 1975 CG5976-RA 426..1168 17..760 3695 99.9 Plus
isoQC-RB 1617 CG5976-RB 177..810 126..760 3150 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20475561..20476196 124..760 3135 99.8 Plus
3L 28110227 3L 20475387..20475497 17..127 555 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:55:32 has no hits.

BO17779.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:03 Download gff for BO17779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5976-PA 1..743 17..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:33 Download gff for BO17779.5prime
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 426..1168 17..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:27 Download gff for BO17779.5prime
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 426..1168 17..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:27 Download gff for BO17779.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20475387..20475497 17..127 100 -> Plus
3L 20475565..20476196 128..760 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:33 Download gff for BO17779.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20468487..20468597 17..127 100 -> Plus
arm_3L 20468665..20469296 128..760 99   Plus

BO17779.complete Sequence

1090 bp assembled on 2006-10-11

GenBank Submission: FJ634214

> BO17779.complete
GAAGTTATCAGTCGACATGCTACATCGAACAGCTAGAATGTGGACGCTGT
GCGTGCAGACAGCTTTGATAGCCACCTTGGTGAGGGGATCCACTTCCCAG
AAGGATAATCTCGTAGGAAGAACACAGATATCCTACAATCCCAGCGAGCT
CTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACACC
TAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAACA
AATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCTAGA
CTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGCA
AATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAGA
TATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGGA
ATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAACC
TGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACTG
AGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGGG
ACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCACC
ATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTTG
GGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGAGTCCTG
GTACATGCGTATCCAGTCCGTGGAGACACGTCTTGCCAAGTTGCAGCTCC
TGGAGCGCTATGCCAGCAGTGGAGTTGCCCAGCGCGACCCCACCCGCTAC
TTCCAGTCGCAGGCCATGCGATCCTCTTTCATCGAGGACGATCACATACC
CTTCCTGCGGCGAAATGTGCCGATCTTGCACCTCATTCCGGTGCCCTTTC
CCAGTGTATGGCATACGCCCGACGATAACGCCAGCGTGATCGATTATGCG
ACGACGGACAACCTGGCACTGATTATACGGCTCTTCGCTTTGGAGTATCT
GCTGGCCGGAACCGAGGCCAAGGCAAGCTTTCTAGACCAT

BO17779.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-RA 1059 CG5976-PA 1..1056 17..1072 5280 100 Plus
isoQC-RB 1065 CG5976-PB 116..1062 126..1072 4735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-RA 1975 CG5976-RA 426..1481 17..1072 5280 100 Plus
isoQC-RB 1617 CG5976-RB 177..1123 126..1072 4735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20475561..20476509 124..1072 4745 100 Plus
3L 28110227 3L 20475387..20475497 17..127 555 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:47:17 has no hits.

BO17779.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:37 Download gff for BO17779.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 1..1059 17..1073 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:13 Download gff for BO17779.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 418..1476 17..1073 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:01 Download gff for BO17779.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 426..1481 17..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:37 Download gff for BO17779.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 418..1476 17..1073 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:28 Download gff for BO17779.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 426..1481 17..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:28 Download gff for BO17779.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20475387..20475497 17..127 100 -> Plus
3L 20475565..20476509 128..1074 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:01 Download gff for BO17779.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20468487..20468597 17..127 100 -> Plus
arm_3L 20468665..20469609 128..1074 99   Plus

BO17779.pep Sequence

Translation from 16 to 1090

> BO17779.pep
MLHRTARMWTLCVQTALIATLVRGSTSQKDNLVGRTQISYNPSELSEPRF
LEYSNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLDWDVEV
NSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVEFLGAT
DSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSI
YGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQ
SVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLRRN
VPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYLLAGTE
AKASFLDH

BO17779.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-PA 352 CG5976-PA 1..352 1..352 1835 100 Plus
isoQC-PB 354 CG5976-PB 34..354 32..352 1651 98.8 Plus
CG6168-PC 342 CG6168-PC 11..331 11..345 690 41.4 Plus
CG6168-PB 342 CG6168-PB 11..331 11..345 690 41.4 Plus
QC-PA 340 CG32412-PA 37..326 58..345 646 43.5 Plus