Clone Sequence Records
BO17779.3prime Sequence
772 bp (714 high quality bases) assembled on 2006-10-13
> BO17779.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCTCGGTTCCGGCCAGCAGATACTCCA
AAGCGAAGAGCCGTATAATCAGTGCCAGGTTGTCCGTCGTCGCATAATCG
ATCACGCTGGCGTTATCGTCGGGCGTATGCCATACACTGGGAAAGGGCAC
CGGAATGAGGTGCAAGATCGGCACATTTCGCCGCAGGAAGGGTATGTGAT
CGTCCTCGATGAAAGAGGATCGCATGGCCTGCGACTGGAAGTAGCGGGTG
GGGTCGCGCTGGGCAACTCCACTGCTGGCATAGCGCTCCAGGAGCTGCAA
CTTGGCAAGACGTGTCTCCACGGACTGGATACGCATGTACCAGGACTCGG
TGTTTTCGAAGAAGCTGTAGAATGCCGGATCGGGGGCTCCCAACAGATCC
AGGAGCACCAGCATATCTATTCTATCAAGTTTTCCTTCATGGTGCCACTT
TTTGGCCAGGTGTCGTGCTCCATAGATGGAGTCCTTGGGTCCCCACTCCT
CAAAAGCCTCCTCGCCATCGAAGAACAAGAGCATCAAACTCAGTTTGCTC
TTCTTGAGGGGTTTCAACTGCTCCTGAAGCACCTGGGCCAGGTTGAGGAG
CATGGCACAGGGCACTGCCGAGTCGGTGGCCCCCAGGAATTCCACTCCAG
GCATGTATTTGCTATCATAATGGCAGGACAGCACCAGATATCTCTCAGCA
TTTGGATTCAGGGTGGCGATGATGTTGTGGAAATGCAATTTGCCTTTGAT
GGGAGCGTGATCATGAAAGCTG
BO17779.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5976-PB | 1065 | CG5976-RB | 309..1062 | 772..19 | 3770 | 100 | Minus |
CG5976-PA | 1059 | CG5976-RA | 303..1056 | 772..19 | 3770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RA | 1975 | CG5976-RA | 728..1481 | 772..19 | 3770 | 100 | Minus |
isoQC-RB | 1617 | CG5976-RB | 370..1123 | 772..19 | 3770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20475756..20476509 | 772..19 | 3770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:59:00 has no hits.
BO17779.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:03 Download gff for
BO17779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-PA | 303..1059 | 18..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:09:03 Download gff for
BO17779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 370..1123 | 19..772 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:14 Download gff for
BO17779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 370..1123 | 19..772 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:14 Download gff for
BO17779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20475756..20476509 | 19..772 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:09:03 Download gff for
BO17779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20468856..20469609 | 19..772 | 100 | | Minus |
BO17779.5prime Sequence
760 bp (705 high quality bases) assembled on 2006-10-13
> BO17779.5prime
GAAGTTATCAGTCGACATGCTACATCGAACAGCTAGAATGTGGACGCTGT
GCGTGCAGACAGCTTTGATAGCCACCTTGGTGAGGGGATCCACTTCCCAG
AAGGATAATCTCGTAGGAAGAACACAGATATCCTACAATCCCAGCGAGCT
CTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACACC
TAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAACA
AATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCTAGA
CTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGCA
AATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAGA
TATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGGA
ATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAACC
TGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACTG
AGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGGG
ACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCACC
ATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTTG
GGAGCCCCCGATCCGGCATTCTACAGCTTTCTTCGAAAACACCGAGTCCT
GGTACATGCG
BO17779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5976-PA | 1059 | CG5976-RA | 1..713 | 17..729 | 3565 | 100 | Plus |
CG5976-PB | 1065 | CG5976-RB | 116..719 | 126..729 | 3020 | 100 | Plus |
CG5976-PA | 1059 | CG5976-RA | 712..743 | 729..760 | 160 | 100 | Plus |
CG5976-PB | 1065 | CG5976-RB | 718..749 | 729..760 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RA | 1975 | CG5976-RA | 426..1168 | 17..760 | 3695 | 99.9 | Plus |
isoQC-RB | 1617 | CG5976-RB | 177..810 | 126..760 | 3150 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20475561..20476196 | 124..760 | 3135 | 99.8 | Plus |
3L | 28110227 | 3L | 20475387..20475497 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:55:32 has no hits.
BO17779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:03 Download gff for
BO17779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-PA | 1..743 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:33 Download gff for
BO17779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RA | 426..1168 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:27 Download gff for
BO17779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RA | 426..1168 | 17..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:27 Download gff for
BO17779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20475387..20475497 | 17..127 | 100 | -> | Plus |
3L | 20475565..20476196 | 128..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:33 Download gff for
BO17779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20468487..20468597 | 17..127 | 100 | -> | Plus |
arm_3L | 20468665..20469296 | 128..760 | 99 | | Plus |
BO17779.complete Sequence
1090 bp assembled on 2006-10-11
GenBank Submission: FJ634214
> BO17779.complete
GAAGTTATCAGTCGACATGCTACATCGAACAGCTAGAATGTGGACGCTGT
GCGTGCAGACAGCTTTGATAGCCACCTTGGTGAGGGGATCCACTTCCCAG
AAGGATAATCTCGTAGGAAGAACACAGATATCCTACAATCCCAGCGAGCT
CTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACACC
TAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAACA
AATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCTAGA
CTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGCA
AATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAGA
TATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGGA
ATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAACC
TGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACTG
AGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGGG
ACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCACC
ATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTTG
GGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGAGTCCTG
GTACATGCGTATCCAGTCCGTGGAGACACGTCTTGCCAAGTTGCAGCTCC
TGGAGCGCTATGCCAGCAGTGGAGTTGCCCAGCGCGACCCCACCCGCTAC
TTCCAGTCGCAGGCCATGCGATCCTCTTTCATCGAGGACGATCACATACC
CTTCCTGCGGCGAAATGTGCCGATCTTGCACCTCATTCCGGTGCCCTTTC
CCAGTGTATGGCATACGCCCGACGATAACGCCAGCGTGATCGATTATGCG
ACGACGGACAACCTGGCACTGATTATACGGCTCTTCGCTTTGGAGTATCT
GCTGGCCGGAACCGAGGCCAAGGCAAGCTTTCTAGACCAT
BO17779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RA | 1059 | CG5976-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
isoQC-RB | 1065 | CG5976-PB | 116..1062 | 126..1072 | 4735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RA | 1975 | CG5976-RA | 426..1481 | 17..1072 | 5280 | 100 | Plus |
isoQC-RB | 1617 | CG5976-RB | 177..1123 | 126..1072 | 4735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20475561..20476509 | 124..1072 | 4745 | 100 | Plus |
3L | 28110227 | 3L | 20475387..20475497 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:17 has no hits.
BO17779.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:37 Download gff for
BO17779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-RA | 1..1059 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:13 Download gff for
BO17779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-RA | 418..1476 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:01 Download gff for
BO17779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RA | 426..1481 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:37 Download gff for
BO17779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-RA | 418..1476 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:28 Download gff for
BO17779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RA | 426..1481 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:28 Download gff for
BO17779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20475387..20475497 | 17..127 | 100 | -> | Plus |
3L | 20475565..20476509 | 128..1074 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:01 Download gff for
BO17779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20468487..20468597 | 17..127 | 100 | -> | Plus |
arm_3L | 20468665..20469609 | 128..1074 | 99 | | Plus |
BO17779.pep Sequence
Translation from 16 to 1090
> BO17779.pep
MLHRTARMWTLCVQTALIATLVRGSTSQKDNLVGRTQISYNPSELSEPRF
LEYSNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLDWDVEV
NSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVEFLGAT
DSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSI
YGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQ
SVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLRRN
VPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYLLAGTE
AKASFLDH
BO17779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-PA | 352 | CG5976-PA | 1..352 | 1..352 | 1835 | 100 | Plus |
isoQC-PB | 354 | CG5976-PB | 34..354 | 32..352 | 1651 | 98.8 | Plus |
CG6168-PC | 342 | CG6168-PC | 11..331 | 11..345 | 690 | 41.4 | Plus |
CG6168-PB | 342 | CG6168-PB | 11..331 | 11..345 | 690 | 41.4 | Plus |
QC-PA | 340 | CG32412-PA | 37..326 | 58..345 | 646 | 43.5 | Plus |