Clone BO17780 Report

Search the DGRC for BO17780

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCon-RA
Protein status:BO17780.pep: validated full length
Sequenced Size:2107

Clone Sequence Records

BO17780.3prime Sequence

805 bp (719 high quality bases) assembled on 2006-10-13

> BO17780.3prime
ATGGTCTAGAAAGCTTGCACCCCGGCTGATCATCATCAGTGCGACTAGAC
TCACTATGATCGTCATGCCCTGGGCCAAAGAATTTGCCCCTGCCGTCGAC
ATGTCCTGGCCCACATTGCTGCGCACATCCATCAGATCGCGGGAGAGGGG
CAGCTCGGTGGGATCGCTGAGTTCATCGTGGCAGGGCAGCATTTCTGGCT
TCAGCAGGAACAACTTGATGTAGATTGCGTTCTTGGTGGTCAGTATGTCG
AGGGCGTCTCCCGACGCGGAGTGCGATGTCATCAGGACATCCACATCGTT
GTGACCCACTACGGGAGAACCGGCACCATAGAATCCCTGCTTGTGCAAGC
TAAGATTGTCATCCAGGTCTAGGCCATGACCCAAGGACATGCCTCCGTTG
TTGTCATCGTAGTAGTCATATCGCTTGTGAGCCGGAGCCACTGCCGCCAG
GTCCTTCTCCTTGACCTCCTCCTGTCGCTTCCTCCTCCTGCGCATCTTGG
ACTCCACCACGTTCTCCGCACTCGAGGCGAACTGCCGCTGTCCCCGCAGT
GCCTGTCGGGATCTGCTGCCCAAATGCTTCCTGCTGTCGTCCATAGTCAG
GCCGCTGTAGCTGCTGCCCACCACGCTGTTGCCCACACCGCCCATGCTGG
CGCTATTGCTGCCAATCCCCGTGAATCCCCCGATATTGAGCACGTCCAGG
ATGGTCGGCGGCACCGGGTCCACAAAGTGCGACAGTTTCGGCTCCTGCAG
CGTGCAGTGCAAGTCCTCCAACGAGTCACCGCAACTGCAGGTGACGTGTG
CGATT

BO17780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7503-PA 2076 Con-RA 1288..2073 805..19 3795 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Con-RB 5588 CG7503-RB 2290..3075 805..19 3850 99.4 Minus
Con-RA 3758 CG7503-RA 1759..2544 805..19 3850 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4939271..4940056 19..805 3825 99.4 Plus
Blast to na_te.dros performed on 2015-02-13 16:00:18 has no hits.

BO17780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:04 Download gff for BO17780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7503-PA 1288..2076 16..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:38:11 Download gff for BO17780.3prime
Subject Subject Range Query Range Percent Splice Strand
Con-RA 1759..2549 14..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:58 Download gff for BO17780.3prime
Subject Subject Range Query Range Percent Splice Strand
Con-RA 1759..2549 14..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:58 Download gff for BO17780.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4939266..4940056 14..805 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:38:11 Download gff for BO17780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4939266..4940056 14..805 99   Plus

BO17780.5prime Sequence

806 bp (797 high quality bases) assembled on 2006-10-13

> BO17780.5prime
GAAGTTATCAGTCGACATGTTGCCGCATCATCAGCGCCATAAAATGGCGA
CTTTGGCGGACAGCGCCATTTGTTTCCTGCTCCTTTCGCTCCTGCTAATT
GGCGCCTGCCTGGTCACGCCCACCGAAGGACGCGCCAAAGATGACCGGCG
CACCAGGGGGCGTGGCAGCAGCAGTGGCGTCCTCTCGTCCTCCTCCAGCA
GCAGCAACAACATGAACAATGGCTACTATAGTGGCTCCTCGTCGACAGCG
GGCTCCTCCTCCGGCTATGTGTTCACCAGCAGTAGTGCGGTGAACTCGGG
AAGCACTGGCTATAGCGGACCGATGGACAGCACTGGATTTTGCACCCGGC
GGCGTGACATGAAGCTAATGTGCTACTGTACCCCGGATGAGAACCACGTG
CCAGTGCAGAAGGCCGAGTGCTGGGTGTTCTCCGAGGGATTGCATCAGAA
TGACACCACCTGGACGCGATTCTATCAGCAGAAGCGTTTGCGGGAACTGA
AGTTTGTGATCCAAAACAATGCCCGATTGGACTATATACCCACCATGATA
ATTGAACCGCTGAAGAACCTGAGCAGCATTGTGATTGAATACTCGCAGGT
GGAGATTGTCAAGAGCTATGCGTTCGCAAATCTGCCCTTTTTGGAAAGGA
TTATCTTGAACAACAATCACATAATGGCCCTCGACCAGGATGCCTTCGCC
AATCACATTANGCTGAGGGAGTTGAACCTGGAGCACAACCAGATCTTCGA
GATGGATCGCTATGCATTCCGTAATTTGCCACTTTGCGAACGGCTCTTCC
TAATAA

BO17780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7503-PA 2076 Con-RA 1..785 17..801 3906 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Con-RB 5588 CG7503-RB 998..1793 12..806 3929 99.6 Plus
Con-RA 3758 CG7503-RA 467..1262 12..806 3929 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4956061..4956850 801..12 3924 99.7 Minus
Blast to na_te.dros performed 2015-02-12 06:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3241..3317 144..219 112 62.3 Plus

BO17780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:05 Download gff for BO17780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7503-PA 1..789 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:11:15 Download gff for BO17780.5prime
Subject Subject Range Query Range Percent Splice Strand
Con-RA 457..1262 3..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:13 Download gff for BO17780.5prime
Subject Subject Range Query Range Percent Splice Strand
Con-RA 457..1262 3..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:13 Download gff for BO17780.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4956055..4956860 3..806 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:11:15 Download gff for BO17780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4956055..4956860 3..806 99   Minus

BO17780.complete Sequence

2107 bp assembled on 2007-03-23

GenBank Submission: FJ634215

> BO17780.complete
GAAGTTATCAGTCGACATGTTGCCGCATCATCAGCGCCATAAAATGGCGA
CTTTGGCGGACAGCGCCATTTGTTTCCTGCTCCTTTCGCTCCTGCTAATT
GGCGCCTGCCTGGTCACGCCCACCGAAGGACGCGCCAAAGATGACCGGCG
CACCAGGGGGCGTGGCAGCAGCAGTGGCGTCCTCTCGTCCTCCTCCAGCA
GCAGCAACAACATGAACAATGGCTACTATAGTGGCTCCTCGTCGACAGCG
GGCTCCTCCTCCGGCTATGTGTTCACCAGCAGTAGTGCGGTGAACTCGGG
AAGCACTGGCTATAGCGGACCGATGGACAGCACTGGATTTTGCACCCGGC
GGCGTGACATGAAGCTAATGTGCTACTGTACCCCGGATGAGAACCACGTG
CCAGTGCAGAAGGCCGAGTGCTGGGTGTTCTCCGAGGGATTGCATCAGAA
TGACACCACCTGGACGCGATTCTATCAGCAGAAGCGTTTGCGGGAACTGA
AGTTTGTGATCCAAAACAATGCCCGATTGGACTATATACCCACCATGATA
ATTGAACCGCTGAAGAACCTGAGCAGCATTGTGATTGAATACTCGCAGGT
GGAGATTGTCAAGAGCTATGCGTTCGCAAATCTGCCCTTTTTGGAAAGGA
TTATCTTGAACAACAATCACATAATGGCCCTCGACCAGGATGCCTTCGCC
AATCACATTAGGCTGAGGGAGTTGAACCTGGAGCACAACCAGATCTTCGA
GATGGATCGCTATGCATTCCGTAATTTGCCACTTTGCGAACGGCTCTTCC
TGAATAACAACAATATCAGCACTCTGCACGAGGGTCTATTCGCTGATATG
GCCAGGCTAACCTTCCTGAATCTGGCCCACAACCAGATCAATGTGCTGAC
CAGCGAGATTTTCCGAGGACTGGGCAATCTAAATGTGCTGAAGCTGACCC
GGAATAATTTGAACTTTATCGGCGATACTGTCTTTGCGGAATTGTGGAGC
CTGAGTGAGCTGGAACTAGACGATAATCGCATTGAGCGCATTTCCGAGCG
CGCTCTGGATGGCCTGAATACACTGAAAACACTGAATCTGCGAAACAATC
TGCTGAAGAAGATCGACAATGGCCTGCTGCGGGGAACCCCCGCCCTGCTG
TCCATCAACGTGCAGGCAAACAAATTGGAAACGCTGACGTTCTACACATT
CCAGCCAATTATGGACAATTTGGTCAACAGCACCAGCGAGCTGCTCGTGT
CAGACAACAAATTCATTTGCGACTGTCGTCTGCAGTGGATCTTCGAATTG
AAAAATCGCACACGTCACCTGCAGCTGCGTGACTCGCTGGAGGACCTGCA
CTGCACGCTGCAGGAGCCGAAACTGTCGCACTTTGTGGACCCGGTGCCGC
CGACCATCCTGGACGTGCTCAATATCGGGGGATTCACGGCGATTGGCAGC
AATAGCGCCAGCATGGGCGGTGTGGGCAACAGCGTGGTGGGCAGCAGCTA
CAGCGGCCTGACTATGGACGACAGCAGGAAGCATTTGGGCAGCAGATCCC
GACAGGCACTGCGGGGACAGCGGCAGTTCGCCTCGAGTGCGGAGAACGTG
GTGGAGTCCAAGATGCGCAGGAGGAGGAAGCGACAGGAGGAGGTCAAGGA
GAAGGACCTGGCGGCAGTGGCTCCGGCTCACAAGCGATATGACTACTACG
ATGACAACAACGGAGGCATGTCCTTGGGTCATGGCCTAGACCTGGATGAC
AATCTTAGCTTGCACAAGCAGGGATTCTATGGTGCCGGTTCTCCCGTAGT
GGGTCACAACGATGTGGATGTCCTGATGACATCGCACTCCGCGTCGGGAG
ACGCCCTCGACATACTGACCACCAAGAACGCAATCTACATCAAGTTGTTC
CTGCTGAAGCCAGAAATGCTGCCCTGCCACGATGAACTCAGCGATCCCAC
CGAGCTGCCCCTCTCCCGCGATCTGATGGATGTGCGCAGCAATGTGGGCC
AGGACATGTCGACGGCAGGGGCAAATTCTTTGGCCCAGGGCATGACGATC
ATAGTGAGTCTAGTCGCACTGATGATGATCAGCCGGGGTGCAAGCTTTCT
AGACCAT

BO17780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Con-RB 2076 CG7503-PB 1..2073 17..2089 10365 100 Plus
Con-RA 2076 CG7503-PA 1..2073 17..2089 10365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Con-RB 5588 CG7503-RB 998..3075 12..2089 10375 100 Plus
Con-RA 3758 CG7503-RA 467..2544 12..2089 10375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4955826..4956850 1036..12 5110 99.9 Minus
3L 28110227 3L 4939271..4940109 2089..1251 4195 100 Minus
3L 28110227 3L 4952891..4953109 1253..1035 1095 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:39:02 has no hits.

BO17780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:50 Download gff for BO17780.complete
Subject Subject Range Query Range Percent Splice Strand
Con-RA 1..2076 17..2092 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:22 Download gff for BO17780.complete
Subject Subject Range Query Range Percent Splice Strand
Con-RA 473..2540 22..2091 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:03 Download gff for BO17780.complete
Subject Subject Range Query Range Percent Splice Strand
Con-RA 477..2544 22..2091 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:51 Download gff for BO17780.complete
Subject Subject Range Query Range Percent Splice Strand
Con-RA 453..2545 3..2094 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:16 Download gff for BO17780.complete
Subject Subject Range Query Range Percent Splice Strand
Con-RA 477..2544 22..2091 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:16 Download gff for BO17780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4939268..4940106 1254..2091 99 <- Minus
3L 4952891..4953107 1037..1253 100 <- Minus
3L 4955826..4956840 22..1036 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:03 Download gff for BO17780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4939268..4940106 1254..2091 99 <- Minus
arm_3L 4952891..4953107 1037..1253 100 <- Minus
arm_3L 4955826..4956840 22..1036 100   Minus

BO17780.pep Sequence

Translation from 16 to 2107

> BO17780.pep
MLPHHQRHKMATLADSAICFLLLSLLLIGACLVTPTEGRAKDDRRTRGRG
SSSGVLSSSSSSSNNMNNGYYSGSSSTAGSSSGYVFTSSSAVNSGSTGYS
GPMDSTGFCTRRRDMKLMCYCTPDENHVPVQKAECWVFSEGLHQNDTTWT
RFYQQKRLRELKFVIQNNARLDYIPTMIIEPLKNLSSIVIEYSQVEIVKS
YAFANLPFLERIILNNNHIMALDQDAFANHIRLRELNLEHNQIFEMDRYA
FRNLPLCERLFLNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSEIFR
GLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISERALDGL
NTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMD
NLVNSTSELLVSDNKFICDCRLQWIFELKNRTRHLQLRDSLEDLHCTLQE
PKLSHFVDPVPPTILDVLNIGGFTAIGSNSASMGGVGNSVVGSSYSGLTM
DDSRKHLGSRSRQALRGQRQFASSAENVVESKMRRRRKRQEEVKEKDLAA
VAPAHKRYDYYDDNNGGMSLGHGLDLDDNLSLHKQGFYGAGSPVVGHNDV
DVLMTSHSASGDALDILTTKNAIYIKLFLLKPEMLPCHDELSDPTELPLS
RDLMDVRSNVGQDMSTAGANSLAQGMTIIVSLVALMMISRGASFLDH

BO17780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Con-PB 691 CG7503-PB 1..691 1..691 3556 100 Plus
Con-PA 691 CG7503-PA 1..691 1..691 3556 100 Plus
CG42346-PD 1817 CG42346-PD 505..743 156..395 276 30.8 Plus
CG42346-PC 1817 CG42346-PC 505..743 156..395 276 30.8 Plus
CG14762-PA 470 CG14762-PA 144..469 174..478 268 26.2 Plus
CG42346-PD 1817 CG42346-PD 486..731 185..423 248 26.3 Plus
CG42346-PC 1817 CG42346-PC 486..731 185..423 248 26.3 Plus
CG42346-PD 1817 CG42346-PD 648..946 156..436 246 24.3 Plus
CG42346-PC 1817 CG42346-PC 648..946 156..436 246 24.3 Plus
CG42346-PD 1817 CG42346-PD 797..1050 161..415 237 27.3 Plus
CG42346-PC 1817 CG42346-PC 797..1050 161..415 237 27.3 Plus
CG42346-PD 1817 CG42346-PD 551..791 152..395 206 24.6 Plus
CG42346-PC 1817 CG42346-PC 551..791 152..395 206 24.6 Plus
CG42346-PD 1817 CG42346-PD 1003..1224 171..390 181 26.6 Plus
CG42346-PC 1817 CG42346-PC 1003..1224 171..390 181 26.6 Plus
CG42346-PD 1817 CG42346-PD 618..839 174..395 179 22.1 Plus
CG42346-PC 1817 CG42346-PC 618..839 174..395 179 22.1 Plus
CG42346-PD 1817 CG42346-PD 586..820 165..400 174 23.3 Plus
CG42346-PC 1817 CG42346-PC 586..820 165..400 174 23.3 Plus
CG42346-PD 1817 CG42346-PD 295..567 137..387 171 21.4 Plus
CG42346-PC 1817 CG42346-PC 295..567 137..387 171 21.4 Plus
CG42346-PD 1817 CG42346-PD 1012..1328 153..427 160 20.1 Plus
CG42346-PC 1817 CG42346-PC 1012..1328 153..427 160 20.1 Plus