Clone Sequence Records
BO17780.3prime Sequence
805 bp (719 high quality bases) assembled on 2006-10-13
> BO17780.3prime
ATGGTCTAGAAAGCTTGCACCCCGGCTGATCATCATCAGTGCGACTAGAC
TCACTATGATCGTCATGCCCTGGGCCAAAGAATTTGCCCCTGCCGTCGAC
ATGTCCTGGCCCACATTGCTGCGCACATCCATCAGATCGCGGGAGAGGGG
CAGCTCGGTGGGATCGCTGAGTTCATCGTGGCAGGGCAGCATTTCTGGCT
TCAGCAGGAACAACTTGATGTAGATTGCGTTCTTGGTGGTCAGTATGTCG
AGGGCGTCTCCCGACGCGGAGTGCGATGTCATCAGGACATCCACATCGTT
GTGACCCACTACGGGAGAACCGGCACCATAGAATCCCTGCTTGTGCAAGC
TAAGATTGTCATCCAGGTCTAGGCCATGACCCAAGGACATGCCTCCGTTG
TTGTCATCGTAGTAGTCATATCGCTTGTGAGCCGGAGCCACTGCCGCCAG
GTCCTTCTCCTTGACCTCCTCCTGTCGCTTCCTCCTCCTGCGCATCTTGG
ACTCCACCACGTTCTCCGCACTCGAGGCGAACTGCCGCTGTCCCCGCAGT
GCCTGTCGGGATCTGCTGCCCAAATGCTTCCTGCTGTCGTCCATAGTCAG
GCCGCTGTAGCTGCTGCCCACCACGCTGTTGCCCACACCGCCCATGCTGG
CGCTATTGCTGCCAATCCCCGTGAATCCCCCGATATTGAGCACGTCCAGG
ATGGTCGGCGGCACCGGGTCCACAAAGTGCGACAGTTTCGGCTCCTGCAG
CGTGCAGTGCAAGTCCTCCAACGAGTCACCGCAACTGCAGGTGACGTGTG
CGATT
BO17780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7503-PA | 2076 | Con-RA | 1288..2073 | 805..19 | 3795 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Con-RB | 5588 | CG7503-RB | 2290..3075 | 805..19 | 3850 | 99.4 | Minus |
Con-RA | 3758 | CG7503-RA | 1759..2544 | 805..19 | 3850 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4939271..4940056 | 19..805 | 3825 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:00:18 has no hits.
BO17780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:04 Download gff for
BO17780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7503-PA | 1288..2076 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:38:11 Download gff for
BO17780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Con-RA | 1759..2549 | 14..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:58 Download gff for
BO17780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Con-RA | 1759..2549 | 14..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:58 Download gff for
BO17780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4939266..4940056 | 14..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:38:11 Download gff for
BO17780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4939266..4940056 | 14..805 | 99 | | Plus |
BO17780.5prime Sequence
806 bp (797 high quality bases) assembled on 2006-10-13
> BO17780.5prime
GAAGTTATCAGTCGACATGTTGCCGCATCATCAGCGCCATAAAATGGCGA
CTTTGGCGGACAGCGCCATTTGTTTCCTGCTCCTTTCGCTCCTGCTAATT
GGCGCCTGCCTGGTCACGCCCACCGAAGGACGCGCCAAAGATGACCGGCG
CACCAGGGGGCGTGGCAGCAGCAGTGGCGTCCTCTCGTCCTCCTCCAGCA
GCAGCAACAACATGAACAATGGCTACTATAGTGGCTCCTCGTCGACAGCG
GGCTCCTCCTCCGGCTATGTGTTCACCAGCAGTAGTGCGGTGAACTCGGG
AAGCACTGGCTATAGCGGACCGATGGACAGCACTGGATTTTGCACCCGGC
GGCGTGACATGAAGCTAATGTGCTACTGTACCCCGGATGAGAACCACGTG
CCAGTGCAGAAGGCCGAGTGCTGGGTGTTCTCCGAGGGATTGCATCAGAA
TGACACCACCTGGACGCGATTCTATCAGCAGAAGCGTTTGCGGGAACTGA
AGTTTGTGATCCAAAACAATGCCCGATTGGACTATATACCCACCATGATA
ATTGAACCGCTGAAGAACCTGAGCAGCATTGTGATTGAATACTCGCAGGT
GGAGATTGTCAAGAGCTATGCGTTCGCAAATCTGCCCTTTTTGGAAAGGA
TTATCTTGAACAACAATCACATAATGGCCCTCGACCAGGATGCCTTCGCC
AATCACATTANGCTGAGGGAGTTGAACCTGGAGCACAACCAGATCTTCGA
GATGGATCGCTATGCATTCCGTAATTTGCCACTTTGCGAACGGCTCTTCC
TAATAA
BO17780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7503-PA | 2076 | Con-RA | 1..785 | 17..801 | 3906 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Con-RB | 5588 | CG7503-RB | 998..1793 | 12..806 | 3929 | 99.6 | Plus |
Con-RA | 3758 | CG7503-RA | 467..1262 | 12..806 | 3929 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4956061..4956850 | 801..12 | 3924 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-12 06:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3241..3317 | 144..219 | 112 | 62.3 | Plus |
BO17780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:05 Download gff for
BO17780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7503-PA | 1..789 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:11:15 Download gff for
BO17780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Con-RA | 457..1262 | 3..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:13 Download gff for
BO17780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Con-RA | 457..1262 | 3..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:13 Download gff for
BO17780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4956055..4956860 | 3..806 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:11:15 Download gff for
BO17780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4956055..4956860 | 3..806 | 99 | | Minus |
BO17780.complete Sequence
2107 bp assembled on 2007-03-23
GenBank Submission: FJ634215
> BO17780.complete
GAAGTTATCAGTCGACATGTTGCCGCATCATCAGCGCCATAAAATGGCGA
CTTTGGCGGACAGCGCCATTTGTTTCCTGCTCCTTTCGCTCCTGCTAATT
GGCGCCTGCCTGGTCACGCCCACCGAAGGACGCGCCAAAGATGACCGGCG
CACCAGGGGGCGTGGCAGCAGCAGTGGCGTCCTCTCGTCCTCCTCCAGCA
GCAGCAACAACATGAACAATGGCTACTATAGTGGCTCCTCGTCGACAGCG
GGCTCCTCCTCCGGCTATGTGTTCACCAGCAGTAGTGCGGTGAACTCGGG
AAGCACTGGCTATAGCGGACCGATGGACAGCACTGGATTTTGCACCCGGC
GGCGTGACATGAAGCTAATGTGCTACTGTACCCCGGATGAGAACCACGTG
CCAGTGCAGAAGGCCGAGTGCTGGGTGTTCTCCGAGGGATTGCATCAGAA
TGACACCACCTGGACGCGATTCTATCAGCAGAAGCGTTTGCGGGAACTGA
AGTTTGTGATCCAAAACAATGCCCGATTGGACTATATACCCACCATGATA
ATTGAACCGCTGAAGAACCTGAGCAGCATTGTGATTGAATACTCGCAGGT
GGAGATTGTCAAGAGCTATGCGTTCGCAAATCTGCCCTTTTTGGAAAGGA
TTATCTTGAACAACAATCACATAATGGCCCTCGACCAGGATGCCTTCGCC
AATCACATTAGGCTGAGGGAGTTGAACCTGGAGCACAACCAGATCTTCGA
GATGGATCGCTATGCATTCCGTAATTTGCCACTTTGCGAACGGCTCTTCC
TGAATAACAACAATATCAGCACTCTGCACGAGGGTCTATTCGCTGATATG
GCCAGGCTAACCTTCCTGAATCTGGCCCACAACCAGATCAATGTGCTGAC
CAGCGAGATTTTCCGAGGACTGGGCAATCTAAATGTGCTGAAGCTGACCC
GGAATAATTTGAACTTTATCGGCGATACTGTCTTTGCGGAATTGTGGAGC
CTGAGTGAGCTGGAACTAGACGATAATCGCATTGAGCGCATTTCCGAGCG
CGCTCTGGATGGCCTGAATACACTGAAAACACTGAATCTGCGAAACAATC
TGCTGAAGAAGATCGACAATGGCCTGCTGCGGGGAACCCCCGCCCTGCTG
TCCATCAACGTGCAGGCAAACAAATTGGAAACGCTGACGTTCTACACATT
CCAGCCAATTATGGACAATTTGGTCAACAGCACCAGCGAGCTGCTCGTGT
CAGACAACAAATTCATTTGCGACTGTCGTCTGCAGTGGATCTTCGAATTG
AAAAATCGCACACGTCACCTGCAGCTGCGTGACTCGCTGGAGGACCTGCA
CTGCACGCTGCAGGAGCCGAAACTGTCGCACTTTGTGGACCCGGTGCCGC
CGACCATCCTGGACGTGCTCAATATCGGGGGATTCACGGCGATTGGCAGC
AATAGCGCCAGCATGGGCGGTGTGGGCAACAGCGTGGTGGGCAGCAGCTA
CAGCGGCCTGACTATGGACGACAGCAGGAAGCATTTGGGCAGCAGATCCC
GACAGGCACTGCGGGGACAGCGGCAGTTCGCCTCGAGTGCGGAGAACGTG
GTGGAGTCCAAGATGCGCAGGAGGAGGAAGCGACAGGAGGAGGTCAAGGA
GAAGGACCTGGCGGCAGTGGCTCCGGCTCACAAGCGATATGACTACTACG
ATGACAACAACGGAGGCATGTCCTTGGGTCATGGCCTAGACCTGGATGAC
AATCTTAGCTTGCACAAGCAGGGATTCTATGGTGCCGGTTCTCCCGTAGT
GGGTCACAACGATGTGGATGTCCTGATGACATCGCACTCCGCGTCGGGAG
ACGCCCTCGACATACTGACCACCAAGAACGCAATCTACATCAAGTTGTTC
CTGCTGAAGCCAGAAATGCTGCCCTGCCACGATGAACTCAGCGATCCCAC
CGAGCTGCCCCTCTCCCGCGATCTGATGGATGTGCGCAGCAATGTGGGCC
AGGACATGTCGACGGCAGGGGCAAATTCTTTGGCCCAGGGCATGACGATC
ATAGTGAGTCTAGTCGCACTGATGATGATCAGCCGGGGTGCAAGCTTTCT
AGACCAT
BO17780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Con-RB | 2076 | CG7503-PB | 1..2073 | 17..2089 | 10365 | 100 | Plus |
Con-RA | 2076 | CG7503-PA | 1..2073 | 17..2089 | 10365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Con-RB | 5588 | CG7503-RB | 998..3075 | 12..2089 | 10375 | 100 | Plus |
Con-RA | 3758 | CG7503-RA | 467..2544 | 12..2089 | 10375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4955826..4956850 | 1036..12 | 5110 | 99.9 | Minus |
3L | 28110227 | 3L | 4939271..4940109 | 2089..1251 | 4195 | 100 | Minus |
3L | 28110227 | 3L | 4952891..4953109 | 1253..1035 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:39:02 has no hits.
BO17780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:50 Download gff for
BO17780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Con-RA | 1..2076 | 17..2092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:22 Download gff for
BO17780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Con-RA | 473..2540 | 22..2091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:03 Download gff for
BO17780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Con-RA | 477..2544 | 22..2091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:51 Download gff for
BO17780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Con-RA | 453..2545 | 3..2094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:16 Download gff for
BO17780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Con-RA | 477..2544 | 22..2091 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:16 Download gff for
BO17780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4939268..4940106 | 1254..2091 | 99 | <- | Minus |
3L | 4952891..4953107 | 1037..1253 | 100 | <- | Minus |
3L | 4955826..4956840 | 22..1036 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:03 Download gff for
BO17780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4939268..4940106 | 1254..2091 | 99 | <- | Minus |
arm_3L | 4952891..4953107 | 1037..1253 | 100 | <- | Minus |
arm_3L | 4955826..4956840 | 22..1036 | 100 | | Minus |
BO17780.pep Sequence
Translation from 16 to 2107
> BO17780.pep
MLPHHQRHKMATLADSAICFLLLSLLLIGACLVTPTEGRAKDDRRTRGRG
SSSGVLSSSSSSSNNMNNGYYSGSSSTAGSSSGYVFTSSSAVNSGSTGYS
GPMDSTGFCTRRRDMKLMCYCTPDENHVPVQKAECWVFSEGLHQNDTTWT
RFYQQKRLRELKFVIQNNARLDYIPTMIIEPLKNLSSIVIEYSQVEIVKS
YAFANLPFLERIILNNNHIMALDQDAFANHIRLRELNLEHNQIFEMDRYA
FRNLPLCERLFLNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSEIFR
GLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISERALDGL
NTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMD
NLVNSTSELLVSDNKFICDCRLQWIFELKNRTRHLQLRDSLEDLHCTLQE
PKLSHFVDPVPPTILDVLNIGGFTAIGSNSASMGGVGNSVVGSSYSGLTM
DDSRKHLGSRSRQALRGQRQFASSAENVVESKMRRRRKRQEEVKEKDLAA
VAPAHKRYDYYDDNNGGMSLGHGLDLDDNLSLHKQGFYGAGSPVVGHNDV
DVLMTSHSASGDALDILTTKNAIYIKLFLLKPEMLPCHDELSDPTELPLS
RDLMDVRSNVGQDMSTAGANSLAQGMTIIVSLVALMMISRGASFLDH
BO17780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Con-PB | 691 | CG7503-PB | 1..691 | 1..691 | 3556 | 100 | Plus |
Con-PA | 691 | CG7503-PA | 1..691 | 1..691 | 3556 | 100 | Plus |
CG42346-PD | 1817 | CG42346-PD | 505..743 | 156..395 | 276 | 30.8 | Plus |
CG42346-PC | 1817 | CG42346-PC | 505..743 | 156..395 | 276 | 30.8 | Plus |
CG14762-PA | 470 | CG14762-PA | 144..469 | 174..478 | 268 | 26.2 | Plus |
CG42346-PD | 1817 | CG42346-PD | 486..731 | 185..423 | 248 | 26.3 | Plus |
CG42346-PC | 1817 | CG42346-PC | 486..731 | 185..423 | 248 | 26.3 | Plus |
CG42346-PD | 1817 | CG42346-PD | 648..946 | 156..436 | 246 | 24.3 | Plus |
CG42346-PC | 1817 | CG42346-PC | 648..946 | 156..436 | 246 | 24.3 | Plus |
CG42346-PD | 1817 | CG42346-PD | 797..1050 | 161..415 | 237 | 27.3 | Plus |
CG42346-PC | 1817 | CG42346-PC | 797..1050 | 161..415 | 237 | 27.3 | Plus |
CG42346-PD | 1817 | CG42346-PD | 551..791 | 152..395 | 206 | 24.6 | Plus |
CG42346-PC | 1817 | CG42346-PC | 551..791 | 152..395 | 206 | 24.6 | Plus |
CG42346-PD | 1817 | CG42346-PD | 1003..1224 | 171..390 | 181 | 26.6 | Plus |
CG42346-PC | 1817 | CG42346-PC | 1003..1224 | 171..390 | 181 | 26.6 | Plus |
CG42346-PD | 1817 | CG42346-PD | 618..839 | 174..395 | 179 | 22.1 | Plus |
CG42346-PC | 1817 | CG42346-PC | 618..839 | 174..395 | 179 | 22.1 | Plus |
CG42346-PD | 1817 | CG42346-PD | 586..820 | 165..400 | 174 | 23.3 | Plus |
CG42346-PC | 1817 | CG42346-PC | 586..820 | 165..400 | 174 | 23.3 | Plus |
CG42346-PD | 1817 | CG42346-PD | 295..567 | 137..387 | 171 | 21.4 | Plus |
CG42346-PC | 1817 | CG42346-PC | 295..567 | 137..387 | 171 | 21.4 | Plus |
CG42346-PD | 1817 | CG42346-PD | 1012..1328 | 153..427 | 160 | 20.1 | Plus |
CG42346-PC | 1817 | CG42346-PC | 1012..1328 | 153..427 | 160 | 20.1 | Plus |