Clone Sequence Records
BO17781.3prime Sequence
851 bp (832 high quality bases) assembled on 2006-10-13
> BO17781.3prime
ATGGTCTAGAAAGCTTGCCGTGGTGTAGGTGCGGATGACGTCCCGGATCA
CCGCCCGGCACAGTGGGCACTGGCCACCACCCACTCCGCGCCACTGCTCG
ATGGCGCAGTCGTAGCACATGCACATGTGTCCGCACATGTACAGCACCGA
GTCGATGGGATTCTCGTAGCAGATGGTGCATTCGGCACTCGAATCGGTGC
TCTGCTGGTCGCTCAGGCTGTCCTTCCACTTGTTGGCCGCATTATTTGTG
CTATTGGCAATGGGCTGCTCGATGTACTGGCTGCTGGTGGTGCTGATAAG
GGTGCCGCTGGAGCAGGCTCCGGCCAGAACACCGCTGGAGGTTACCGTGG
CCGTTGGCCTGGCCGCGAGTTGGCCGTTTATATCGTGCGAGCTGCTAGCA
GGTGGCAGGTTGACCACCAGAACGGTGCCACCACCATTCGGCTGGATCTG
GAGAATATCTCCGTTGGAGGGCATGCTGATCATGCGGCTGCCATTGACTC
CGCCAGCTGAGGCCAAAGTGCTCGTACTCTGGGCTACGCTCAGCTGCGAG
GGATGATGCAACAGCTTGGCAGTGGCTCCGGCATTCAGACTGCTCATCGA
CTCGGTCATGGGCAGCATGCGGGACGTGGAGGCAGCGTTGCAGGCGGACG
AGCTGCTGGCATTCACATTGACCTGCGGCTGCGATGGATACGCAACCATG
TTGGGTAACTGCTGGCGGAACATCCTCAGAGACTGCGTCGAGCCGTAGAC
ATCCAGGAAGGCCCACAGCTGGAGGGACTGGTCCACATGCATCACCACCA
CAGCTGGTCCGTTGTTCTTGCTGATGCTCACTTCACCGTTGGGCGCCACG
A
BO17781.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11988-PC | 2019 | neur-RC | 1184..2016 | 851..19 | 4165 | 100 | Minus |
CG11988-PA | 2265 | neur-RA | 1430..2262 | 851..19 | 4165 | 100 | Minus |
CG11988-PD | 2016 | neur-RD | 1184..2013 | 851..19 | 4095 | 99.6 | Minus |
CG11988-PB | 2262 | neur-RB | 1430..2259 | 851..19 | 4095 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RE | 3381 | CG11988-RE | 1476..2308 | 851..19 | 4165 | 100 | Minus |
neur-RA | 3992 | CG11988-RA | 1712..2544 | 851..19 | 4165 | 100 | Minus |
neur-RC | 3756 | CG11988-RC | 1476..2308 | 851..19 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9022104..9022687 | 268..851 | 2920 | 100 | Plus |
3R | 32079331 | 3R | 9021796..9022046 | 19..269 | 1255 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2613 | 316..208 | 120 | 59.1 | Minus |
BO17781.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:06 Download gff for
BO17781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11988-PA | 1431..2265 | 18..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:54:46 Download gff for
BO17781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 1477..2308 | 19..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:03:03 Download gff for
BO17781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 1477..2308 | 19..850 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:03:03 Download gff for
BO17781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9021796..9022044 | 19..267 | 100 | <- | Plus |
3R | 9022104..9022686 | 268..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:54:46 Download gff for
BO17781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4847518..4847766 | 19..267 | 100 | <- | Plus |
arm_3R | 4847826..4848408 | 268..850 | 100 | | Plus |
BO17781.5prime Sequence
870 bp (784 high quality bases) assembled on 2006-10-13
> BO17781.5prime
GAAGTTATCAGTCGACATGGGTCAGTCGGCTGGTAAAATAGTTCGCCGCT
CACCCTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCAC
TCCGTACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCG
TCGCTTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTC
GCATCAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGG
AACGGTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGA
GGGAACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCT
TCTGGGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTT
TACTACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGA
GGAGAAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGA
CGGTGATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCT
CGCATTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGT
GCCCGCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCG
CCCTGAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGA
CACACTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCT
GCAATCCCTGCACTTGGCAGGAAACGGTGGAAGCGTGCCTAGCGTAGAAC
AGGCGGCCATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTAC
AATGCCAAACGACGACTGAT
BO17781.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11988-PC | 2019 | neur-RC | 1..854 | 17..870 | 4195 | 99.6 | Plus |
CG11988-PD | 2016 | neur-RD | 1..854 | 17..870 | 4195 | 99.6 | Plus |
CG11988-PA | 2265 | neur-RA | 271..1100 | 41..870 | 4075 | 99.6 | Plus |
CG11988-PB | 2262 | neur-RB | 271..1100 | 41..870 | 4075 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RE | 3381 | CG11988-RE | 293..1146 | 17..870 | 4225 | 99.6 | Plus |
neur-RD | 3753 | CG11988-RD | 293..1146 | 17..870 | 4225 | 99.6 | Plus |
neur-RC | 3756 | CG11988-RC | 293..1146 | 17..870 | 4225 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9023017..9023847 | 870..40 | 4110 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:01:33 has no hits.
BO17781.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:06 Download gff for
BO17781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11988-PD | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:46:57 Download gff for
BO17781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 286..1146 | 5..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:11 Download gff for
BO17781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 286..1146 | 5..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:11 Download gff for
BO17781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9023017..9023845 | 42..870 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:46:57 Download gff for
BO17781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4848739..4849567 | 42..870 | 99 | <- | Minus |
BO17781.complete Sequence
2050 bp assembled on 2006-12-18
GenBank Submission: FJ634216
> BO17781.complete
GAAGTTATCAGTCGACATGGGTCAGTCGGCTGGTAAAATAGTTCGCCGCT
CACCCTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCAC
TCCGTACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCG
TCGCTTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTC
GCATCAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGG
AACGGTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGA
GGGAACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCT
TCTGGGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTT
TACTACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGA
GGAGAAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGA
CGGTGATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCT
CGCATTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGT
GCCCGCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCG
CCCTGAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGA
CACACTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCT
GCAATCCCTGCACTTGGCAGGAAACGGTGGAAGCGTGGCTAGCGTAGAAC
AGGCGGCCATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTAC
AATGCCAACGGACGACTGATTCCAGTGCCCTTCCACAACACCAAGGGCCG
GAATGTGCGGCTCTCGCAGGATCGCTTTGTGGCTTCTCGTACGGAATCTG
ACTTCTGCCAGGGATATGTGTTCACTGCCCGTCCCATTCGCATTGGTGAG
AAGCTGATTGTGCAGGTCCTGAAAACGGAACAGATGTACGTGGGTGCCTT
GGCTTTGGGTCTGACCTCCTGCAATCCGGCCATGTTGCAGCCCAATGATT
TGCCCAATGATTCGGATTTCCTGCTCGATCGCCCCGAGTACTGGGTGGTG
AGCAAGGATATTGCAGCTGCTCCTCAGCGCGGCGATGAGATTGCCTTCTT
CGTGGCGCCCAACGGTGAAGTGAGCATCAGCAAGAACAACGGACCAGCTG
TGGTGGTGATGCATGTGGACCAGTCCCTCCAGCTGTGGGCCTTCCTGGAT
GTCTACGGCTCGACGCAGTCTCTGAGGATGTTCCGCCAGCAGTTACCCAA
CATGGTTGCGTATCCATCGCAGCCGCAGGTCAATGTGAATGCCAGCAGCT
CGTCCGCCTGCAACGCTGCCTCCACGTCCCGCATGCTGCCCATGACCGAG
TCGATGAGCAGTCTGAATGCCGGAGCCACTGCCAAGCTGTTGCATCATCC
CTCGCAGCTGAGCGTAGCCCAGAGTACGAGCACTTTGGCCTCAGCTGGCG
GAGTCAATGGCAGCCGCATGATCAGCATGCCCTCCAACGGAGATATTCTC
CAGATCCAGCCGAATGGTGGTGGCACCGTTCTGGTGGTCAACCTGCCACC
TGCTAGCAGCTCGCACGATATAAACGGCCAACTCGCGGCCAGGCCAACGG
CCACGGTAACCTCCAGCGGTGTTCTGGCCGGAGCCTGCTCCAGCGGCACC
CTTATCAGCACCACCAGCAGCCAGTACATCGAGCAGCCCATTGCCAATAG
CACAAATAATGCGGCCAACAAGTGGAAGGACAGCCTGAGCGACCAGCAGA
GCACCGATTCGAGTGCCGAATGCACCATCTGCTACGAGAATCCCATCGAC
TCGGTGCTGTACATGTGCGGACACATGTGCATGTGCTACGACTGCGCCAT
CGAGCAGTGGCGCGGAGTGGGTGGTGGCCAGTGCCCACTGTGCCGGGCGG
TGATCCGGGACGTCATCCGCACCTACACCACGGCAAGCTTTCTAGACCAT
BO17781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RE | 2019 | CG11988-PE | 1..2016 | 17..2032 | 10080 | 100 | Plus |
neur-RC | 2019 | CG11988-PC | 1..2016 | 17..2032 | 10080 | 100 | Plus |
neur-RD | 2016 | CG11988-PD | 1..2013 | 17..2032 | 10000 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RE | 3381 | CG11988-RE | 293..2308 | 17..2032 | 10080 | 100 | Plus |
neur-RC | 3756 | CG11988-RC | 293..2308 | 17..2032 | 10080 | 100 | Plus |
neur-RD | 3753 | CG11988-RD | 293..2305 | 17..2032 | 10000 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9022104..9023847 | 1783..40 | 8720 | 100 | Minus |
3R | 32079331 | 3R | 9021796..9022046 | 2032..1782 | 1255 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2613 | 1735..1843 | 120 | 59.1 | Plus |
BO17781.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:04 Download gff for
BO17781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 1..2019 | 17..2033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:53 Download gff for
BO17781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RE | 289..2304 | 17..2034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:30 Download gff for
BO17781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 293..2308 | 17..2034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:04 Download gff for
BO17781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 282..2304 | 5..2032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:39 Download gff for
BO17781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 293..2308 | 17..2034 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:39 Download gff for
BO17781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9021794..9022044 | 1784..2034 | 99 | <- | Minus |
3R | 9022104..9023845 | 42..1783 | 100 | <- | Minus |
3R | 9039155..9039179 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:30 Download gff for
BO17781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4847516..4847766 | 1784..2034 | 99 | <- | Minus |
arm_3R | 4847826..4849567 | 42..1783 | 100 | <- | Minus |
arm_3R | 4864877..4864901 | 17..41 | 100 | | Minus |
BO17781.pep Sequence
Translation from 16 to 2050
> BO17781.pep
MGQSAGKIVRRSPSSCPGPNNLPPLQFHSVHGDNIRISRDGTLARRFESF
CRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPK
YACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVI
LTGIDTRSLLWTVIDIYGNCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQ
QMPQPAANASSALNSHHPHQQSRRSLPGHTAAIEHDLERHVMPSLQSLHL
AGNGGSVASVEQAAIAHDLANGLPPLRYNANGRLIPVPFHNTKGRNVRLS
QDRFVASRTESDFCQGYVFTARPIRIGEKLIVQVLKTEQMYVGALALGLT
SCNPAMLQPNDLPNDSDFLLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNG
EVSISKNNGPAVVVMHVDQSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYP
SQPQVNVNASSSSACNAASTSRMLPMTESMSSLNAGATAKLLHHPSQLSV
AQSTSTLASAGGVNGSRMISMPSNGDILQIQPNGGGTVLVVNLPPASSSH
DINGQLAARPTATVTSSGVLAGACSSGTLISTTSSQYIEQPIANSTNNAA
NKWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRG
VGGGQCPLCRAVIRDVIRTYTTASFLDH
BO17781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-PE | 672 | CG11988-PE | 1..672 | 1..672 | 3528 | 100 | Plus |
neur-PC | 672 | CG11988-PC | 1..672 | 1..672 | 3528 | 100 | Plus |
neur-PD | 671 | CG11988-PD | 1..671 | 1..672 | 3511 | 99.9 | Plus |
neur-PA | 754 | CG11988-PA | 90..754 | 8..672 | 3491 | 99.8 | Plus |
neur-PB | 753 | CG11988-PB | 90..753 | 8..672 | 3474 | 99.7 | Plus |