Clone BO17781 Report

Search the DGRC for BO17781

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptneur-RC
Protein status:BO17781.pep: validated full length
Sequenced Size:2050

Clone Sequence Records

BO17781.3prime Sequence

851 bp (832 high quality bases) assembled on 2006-10-13

> BO17781.3prime
ATGGTCTAGAAAGCTTGCCGTGGTGTAGGTGCGGATGACGTCCCGGATCA
CCGCCCGGCACAGTGGGCACTGGCCACCACCCACTCCGCGCCACTGCTCG
ATGGCGCAGTCGTAGCACATGCACATGTGTCCGCACATGTACAGCACCGA
GTCGATGGGATTCTCGTAGCAGATGGTGCATTCGGCACTCGAATCGGTGC
TCTGCTGGTCGCTCAGGCTGTCCTTCCACTTGTTGGCCGCATTATTTGTG
CTATTGGCAATGGGCTGCTCGATGTACTGGCTGCTGGTGGTGCTGATAAG
GGTGCCGCTGGAGCAGGCTCCGGCCAGAACACCGCTGGAGGTTACCGTGG
CCGTTGGCCTGGCCGCGAGTTGGCCGTTTATATCGTGCGAGCTGCTAGCA
GGTGGCAGGTTGACCACCAGAACGGTGCCACCACCATTCGGCTGGATCTG
GAGAATATCTCCGTTGGAGGGCATGCTGATCATGCGGCTGCCATTGACTC
CGCCAGCTGAGGCCAAAGTGCTCGTACTCTGGGCTACGCTCAGCTGCGAG
GGATGATGCAACAGCTTGGCAGTGGCTCCGGCATTCAGACTGCTCATCGA
CTCGGTCATGGGCAGCATGCGGGACGTGGAGGCAGCGTTGCAGGCGGACG
AGCTGCTGGCATTCACATTGACCTGCGGCTGCGATGGATACGCAACCATG
TTGGGTAACTGCTGGCGGAACATCCTCAGAGACTGCGTCGAGCCGTAGAC
ATCCAGGAAGGCCCACAGCTGGAGGGACTGGTCCACATGCATCACCACCA
CAGCTGGTCCGTTGTTCTTGCTGATGCTCACTTCACCGTTGGGCGCCACG
A

BO17781.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11988-PC 2019 neur-RC 1184..2016 851..19 4165 100 Minus
CG11988-PA 2265 neur-RA 1430..2262 851..19 4165 100 Minus
CG11988-PD 2016 neur-RD 1184..2013 851..19 4095 99.6 Minus
CG11988-PB 2262 neur-RB 1430..2259 851..19 4095 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RE 3381 CG11988-RE 1476..2308 851..19 4165 100 Minus
neur-RA 3992 CG11988-RA 1712..2544 851..19 4165 100 Minus
neur-RC 3756 CG11988-RC 1476..2308 851..19 4165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9022104..9022687 268..851 2920 100 Plus
3R 32079331 3R 9021796..9022046 19..269 1255 100 Plus
Blast to na_te.dros performed 2015-02-11 18:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2613 316..208 120 59.1 Minus

BO17781.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:06 Download gff for BO17781.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11988-PA 1431..2265 18..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:54:46 Download gff for BO17781.3prime
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1477..2308 19..850 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:03:03 Download gff for BO17781.3prime
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1477..2308 19..850 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:03:03 Download gff for BO17781.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9021796..9022044 19..267 100 <- Plus
3R 9022104..9022686 268..850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:54:46 Download gff for BO17781.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4847518..4847766 19..267 100 <- Plus
arm_3R 4847826..4848408 268..850 100   Plus

BO17781.5prime Sequence

870 bp (784 high quality bases) assembled on 2006-10-13

> BO17781.5prime
GAAGTTATCAGTCGACATGGGTCAGTCGGCTGGTAAAATAGTTCGCCGCT
CACCCTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCAC
TCCGTACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCG
TCGCTTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTC
GCATCAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGG
AACGGTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGA
GGGAACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCT
TCTGGGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTT
TACTACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGA
GGAGAAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGA
CGGTGATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCT
CGCATTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGT
GCCCGCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCG
CCCTGAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGA
CACACTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCT
GCAATCCCTGCACTTGGCAGGAAACGGTGGAAGCGTGCCTAGCGTAGAAC
AGGCGGCCATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTAC
AATGCCAAACGACGACTGAT

BO17781.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11988-PC 2019 neur-RC 1..854 17..870 4195 99.6 Plus
CG11988-PD 2016 neur-RD 1..854 17..870 4195 99.6 Plus
CG11988-PA 2265 neur-RA 271..1100 41..870 4075 99.6 Plus
CG11988-PB 2262 neur-RB 271..1100 41..870 4075 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RE 3381 CG11988-RE 293..1146 17..870 4225 99.6 Plus
neur-RD 3753 CG11988-RD 293..1146 17..870 4225 99.6 Plus
neur-RC 3756 CG11988-RC 293..1146 17..870 4225 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9023017..9023847 870..40 4110 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 18:01:33 has no hits.

BO17781.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:06 Download gff for BO17781.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11988-PD 1..854 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:46:57 Download gff for BO17781.5prime
Subject Subject Range Query Range Percent Splice Strand
neur-RC 286..1146 5..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:11 Download gff for BO17781.5prime
Subject Subject Range Query Range Percent Splice Strand
neur-RC 286..1146 5..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:11 Download gff for BO17781.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9023017..9023845 42..870 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:46:57 Download gff for BO17781.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4848739..4849567 42..870 99 <- Minus

BO17781.complete Sequence

2050 bp assembled on 2006-12-18

GenBank Submission: FJ634216

> BO17781.complete
GAAGTTATCAGTCGACATGGGTCAGTCGGCTGGTAAAATAGTTCGCCGCT
CACCCTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCAC
TCCGTACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCG
TCGCTTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTC
GCATCAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGG
AACGGTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGA
GGGAACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCT
TCTGGGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTT
TACTACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGA
GGAGAAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGA
CGGTGATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCT
CGCATTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGT
GCCCGCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCG
CCCTGAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGA
CACACTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCT
GCAATCCCTGCACTTGGCAGGAAACGGTGGAAGCGTGGCTAGCGTAGAAC
AGGCGGCCATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTAC
AATGCCAACGGACGACTGATTCCAGTGCCCTTCCACAACACCAAGGGCCG
GAATGTGCGGCTCTCGCAGGATCGCTTTGTGGCTTCTCGTACGGAATCTG
ACTTCTGCCAGGGATATGTGTTCACTGCCCGTCCCATTCGCATTGGTGAG
AAGCTGATTGTGCAGGTCCTGAAAACGGAACAGATGTACGTGGGTGCCTT
GGCTTTGGGTCTGACCTCCTGCAATCCGGCCATGTTGCAGCCCAATGATT
TGCCCAATGATTCGGATTTCCTGCTCGATCGCCCCGAGTACTGGGTGGTG
AGCAAGGATATTGCAGCTGCTCCTCAGCGCGGCGATGAGATTGCCTTCTT
CGTGGCGCCCAACGGTGAAGTGAGCATCAGCAAGAACAACGGACCAGCTG
TGGTGGTGATGCATGTGGACCAGTCCCTCCAGCTGTGGGCCTTCCTGGAT
GTCTACGGCTCGACGCAGTCTCTGAGGATGTTCCGCCAGCAGTTACCCAA
CATGGTTGCGTATCCATCGCAGCCGCAGGTCAATGTGAATGCCAGCAGCT
CGTCCGCCTGCAACGCTGCCTCCACGTCCCGCATGCTGCCCATGACCGAG
TCGATGAGCAGTCTGAATGCCGGAGCCACTGCCAAGCTGTTGCATCATCC
CTCGCAGCTGAGCGTAGCCCAGAGTACGAGCACTTTGGCCTCAGCTGGCG
GAGTCAATGGCAGCCGCATGATCAGCATGCCCTCCAACGGAGATATTCTC
CAGATCCAGCCGAATGGTGGTGGCACCGTTCTGGTGGTCAACCTGCCACC
TGCTAGCAGCTCGCACGATATAAACGGCCAACTCGCGGCCAGGCCAACGG
CCACGGTAACCTCCAGCGGTGTTCTGGCCGGAGCCTGCTCCAGCGGCACC
CTTATCAGCACCACCAGCAGCCAGTACATCGAGCAGCCCATTGCCAATAG
CACAAATAATGCGGCCAACAAGTGGAAGGACAGCCTGAGCGACCAGCAGA
GCACCGATTCGAGTGCCGAATGCACCATCTGCTACGAGAATCCCATCGAC
TCGGTGCTGTACATGTGCGGACACATGTGCATGTGCTACGACTGCGCCAT
CGAGCAGTGGCGCGGAGTGGGTGGTGGCCAGTGCCCACTGTGCCGGGCGG
TGATCCGGGACGTCATCCGCACCTACACCACGGCAAGCTTTCTAGACCAT

BO17781.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RE 2019 CG11988-PE 1..2016 17..2032 10080 100 Plus
neur-RC 2019 CG11988-PC 1..2016 17..2032 10080 100 Plus
neur-RD 2016 CG11988-PD 1..2013 17..2032 10000 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RE 3381 CG11988-RE 293..2308 17..2032 10080 100 Plus
neur-RC 3756 CG11988-RC 293..2308 17..2032 10080 100 Plus
neur-RD 3753 CG11988-RD 293..2305 17..2032 10000 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9022104..9023847 1783..40 8720 100 Minus
3R 32079331 3R 9021796..9022046 2032..1782 1255 100 Minus
Blast to na_te.dros performed 2014-11-28 08:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2613 1735..1843 120 59.1 Plus

BO17781.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:04 Download gff for BO17781.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1..2019 17..2033 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:53 Download gff for BO17781.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RE 289..2304 17..2034 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:30 Download gff for BO17781.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 293..2308 17..2034 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:04 Download gff for BO17781.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 282..2304 5..2032 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:39 Download gff for BO17781.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 293..2308 17..2034 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:39 Download gff for BO17781.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9021794..9022044 1784..2034 99 <- Minus
3R 9022104..9023845 42..1783 100 <- Minus
3R 9039155..9039179 17..41 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:30 Download gff for BO17781.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4847516..4847766 1784..2034 99 <- Minus
arm_3R 4847826..4849567 42..1783 100 <- Minus
arm_3R 4864877..4864901 17..41 100   Minus

BO17781.pep Sequence

Translation from 16 to 2050

> BO17781.pep
MGQSAGKIVRRSPSSCPGPNNLPPLQFHSVHGDNIRISRDGTLARRFESF
CRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPK
YACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVI
LTGIDTRSLLWTVIDIYGNCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQ
QMPQPAANASSALNSHHPHQQSRRSLPGHTAAIEHDLERHVMPSLQSLHL
AGNGGSVASVEQAAIAHDLANGLPPLRYNANGRLIPVPFHNTKGRNVRLS
QDRFVASRTESDFCQGYVFTARPIRIGEKLIVQVLKTEQMYVGALALGLT
SCNPAMLQPNDLPNDSDFLLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNG
EVSISKNNGPAVVVMHVDQSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYP
SQPQVNVNASSSSACNAASTSRMLPMTESMSSLNAGATAKLLHHPSQLSV
AQSTSTLASAGGVNGSRMISMPSNGDILQIQPNGGGTVLVVNLPPASSSH
DINGQLAARPTATVTSSGVLAGACSSGTLISTTSSQYIEQPIANSTNNAA
NKWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRG
VGGGQCPLCRAVIRDVIRTYTTASFLDH

BO17781.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
neur-PE 672 CG11988-PE 1..672 1..672 3528 100 Plus
neur-PC 672 CG11988-PC 1..672 1..672 3528 100 Plus
neur-PD 671 CG11988-PD 1..671 1..672 3511 99.9 Plus
neur-PA 754 CG11988-PA 90..754 8..672 3491 99.8 Plus
neur-PB 753 CG11988-PB 90..753 8..672 3474 99.7 Plus