Clone Sequence Records
BO17785.3prime Sequence
633 bp (626 high quality bases) assembled on 2006-10-13
> BO17785.3prime
ATGGTCTAGAAAGCTTGCCTGCATTGCTTCGGTGTTGGCTTGCCAAATAA
CGGAATCATTTTCAGCCTTTTGCTCTTCTAGTTGTACGGATCTAACTGTT
ATTGAAAGGTTTCTGTTGTTTTTGTAGTCGCTGTTGGGCGATTTAATATT
TAGCCAATTCCTTGTTCCATCTTGGGCATACAATAAATCAAGTTGTGGAC
AGGTGCTTATGAATGAAAGCGTAGGTACTGATTGATGGCGCGGATGCTTA
TATTCAATTTTATTCAGTCTTGCCCTGGCGCAGCTTGTCTTCTCAAGATT
CATCAATTCAACATTCACGTTACTCGTTTTACGTAAAAGTGAGGATACTT
GGACATTAATAAAAGGTGTGGACTCTAATGCATTTGAAACGGATACCTGA
CTGCTAATTGTCATGGTGAAATCTGAGGCAGTTTCCACATCCCGATGCCA
TAACGTACCGGGAACTTGGCTCGCAATAAAAAAAGCTCCGGCTAATGTTA
TAATACTTGCCGCATAGCTTAGAGATAGTACAGACAGGCTGTTAACGAGG
AATTTCGTCCATTCAAGGCTAGGCAGCAACTGCACGAGCTCACTGTAAGT
GAGCCAACCTCTACGCAGTCCCCTGCTGTTCAG
BO17785.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:17:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RE | 1203 | CG40191-RE | 264..877 | 633..19 | 3050 | 99.8 | Minus |
CG40191-RC | 1518 | CG40191-RC | 766..1379 | 633..19 | 3050 | 99.8 | Minus |
CG40191-RD | 1386 | CG40191-RD | 586..1199 | 633..19 | 3050 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1265410..1266023 | 633..19 | 3025 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:59:10 has no hits.
BO17785.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:09:06 Download gff for
BO17785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RD | 586..1204 | 11..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:16 Download gff for
BO17785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RD | 586..1204 | 11..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:16 Download gff for
BO17785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1265410..1266028 | 11..633 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:09:06 Download gff for
BO17785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 392043..392661 | 11..633 | 99 | | Minus |
BO17785.5prime Sequence
743 bp (645 high quality bases) assembled on 2006-10-13
> BO17785.5prime
GAAGTTATCAGTCGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTATTTAAAAAGTTTTCACGAATATATGTATTAGCAAATTTTTTAAAT
TTCCAGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCT
CTACTATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCT
TTGCGGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCT
TTGCATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTG
CTCTTTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACT
CGGGCTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTA
ATGATTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGA
AGACTGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCG
AGCTCGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAG
CTATTCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCA
GGGACTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGC
CTAGCCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCT
CTAAGCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTT
BO17785.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:17:17 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RB | 1579 | CG40191-RB | 66..792 | 17..743 | 3635 | 100 | Plus |
CG40191-RC | 1518 | CG40191-RC | 280..918 | 105..743 | 3195 | 100 | Plus |
CG40191-RD | 1386 | CG40191-RD | 100..738 | 105..743 | 3195 | 100 | Plus |
CG40191-RC | 1518 | CG40191-RC | 246..283 | 17..54 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1264458..1264841 | 17..400 | 1920 | 100 | Plus |
2R | 25286936 | 2R | 1265342..1265562 | 523..743 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 1265171..1265294 | 401..524 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:10:38 has no hits.
BO17785.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:56 Download gff for
BO17785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 63..792 | 14..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:09:07 Download gff for
BO17785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 63..792 | 14..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:09:07 Download gff for
BO17785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1264455..1264841 | 14..400 | 99 | -> | Plus |
2R | 1265171..1265293 | 401..523 | 100 | -> | Plus |
2R | 1265343..1265562 | 524..743 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:56 Download gff for
BO17785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391088..391474 | 14..400 | 99 | -> | Plus |
2RHet | 391804..391926 | 401..523 | 100 | -> | Plus |
2RHet | 391976..392195 | 524..743 | 100 | | Plus |
BO17785.complete Sequence
1222 bp assembled on 2006-10-11
GenBank Submission: FJ634217
> BO17785.complete
GAAGTTATCAGTCGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTATTTAAAAAGTTTTCACGAATATATGTATTAGCAAATTTTTTAAAT
TTCCAGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCT
CTACTATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCT
TTGCGGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCT
TTGCATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTG
CTCTTTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACT
CGGGCTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTA
ATGATTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGA
AGACTGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCG
AGCTCGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAG
CTATTCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCA
GGGACTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGC
CTAGCCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCT
CTAAGCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGC
GAGCCAAGTTCCCGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAG
ATTTCACCATGACAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAG
TCCACACCTTTTATTAATGTCCAAGTATCCTCACTTTTACGTAAAACGAG
TAACGTGAATGTTGAATTGATGAATCTTGAGAAGACAAGCTGCGCCAGGG
CAAGACTGAATAAAATTGAATATAAGCATCCGCGCCATCAATCAGTACCT
ACGCTTTCATTCATAAGCACCTGTCCACAACTTGATTTATTGTATGCCCA
AGATGGAACAAGGAATTGGCTAAATATTAAATCGCCCAACAGCGACTACA
AAAACAACAGAAACCTTTCAATAACAGTTAGATCCGTACAACTAGAAGAG
CAAAAGGCTGAAAATGATTCCGTTATTTGGCAAGCCAACACCGAAGCAAT
GCAGGCAAGCTTTCTAGACCAT
BO17785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RB | 1191 | CG40191-PB | 1..1188 | 17..1204 | 5940 | 100 | Plus |
CG40191-RC | 1137 | CG40191-PC | 35..1134 | 105..1204 | 5500 | 100 | Plus |
CG40191-RD | 1137 | CG40191-PD | 35..1134 | 105..1204 | 5500 | 100 | Plus |
CG40191-RC | 1137 | CG40191-PC | 1..38 | 17..54 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-RB | 1579 | CG40191-RB | 66..1253 | 17..1204 | 5940 | 100 | Plus |
CG40191-RC | 1518 | CG40191-RC | 280..1379 | 105..1204 | 5500 | 100 | Plus |
CG40191-RD | 1386 | CG40191-RD | 100..1199 | 105..1204 | 5500 | 100 | Plus |
CG40191-RC | 1518 | CG40191-RC | 246..283 | 17..54 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1265342..1266023 | 523..1204 | 3410 | 100 | Plus |
2R | 25286936 | 2R | 1264458..1264841 | 17..400 | 1920 | 100 | Plus |
2R | 25286936 | 2R | 1265171..1265294 | 401..524 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:35:32 has no hits.
BO17785.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:38 Download gff for
BO17785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 1..1191 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:15 Download gff for
BO17785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 60..1255 | 14..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:38 Download gff for
BO17785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 66..1253 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:38 Download gff for
BO17785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 60..1255 | 14..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:28 Download gff for
BO17785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40191-RB | 66..1253 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:28 Download gff for
BO17785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1265171..1265293 | 401..523 | 100 | -> | Plus |
2R | 1264458..1264841 | 17..400 | 100 | -> | Plus |
2R | 1265343..1266023 | 524..1206 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:38 Download gff for
BO17785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 391804..391926 | 401..523 | 100 | -> | Plus |
2RHet | 391091..391474 | 17..400 | 100 | -> | Plus |
2RHet | 391976..392656 | 524..1206 | 99 | | Plus |
BO17785.pep Sequence
Translation from 16 to 1222
> BO17785.pep
MGRFKLCASPREVFKKFSRIYVLANFLNFQVMKYEDFIKRIRKSLYYGVG
TPDTEMSVSLPFAEYAADLFSETHRGHSLHRLSCVSAAQVHATPCSLIMA
LIYLDRLNVIDSGYSCRITPQQLFVVSLMISTKFYAGHDERFYLEDWASD
ACMTEDRLKAVELEFLSAMGWNIYISNELFFDKLRNVERSLAEQQGLRRG
WLTYSELVQLLPSLEWTKFLVNSLSVLSLSYAASIITLAGAFFIASQVPG
TLWHRDVETASDFTMTISSQVSVSNALESTPFINVQVSSLLRKTSNVNVE
LMNLEKTSCARARLNKIEYKHPRHQSVPTLSFISTCPQLDLLYAQDGTRN
WLNIKSPNSDYKNNRNLSITVRSVQLEEQKAENDSVIWQANTEAMQASFL
DH
BO17785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40191-PB | 396 | CG40191-PB | 1..396 | 1..396 | 2032 | 100 | Plus |
CG40191-PC | 378 | CG40191-PC | 1..378 | 1..396 | 1912 | 95.5 | Plus |
CG40191-PD | 378 | CG40191-PD | 1..378 | 1..396 | 1912 | 95.5 | Plus |
CG40191-PA | 378 | CG40191-PA | 1..378 | 1..396 | 1912 | 95.5 | Plus |
CG40191-PE | 268 | CG40191-PE | 1..268 | 129..396 | 1371 | 100 | Plus |