Clone BO17785 Report

Search the DGRC for BO17785

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG40191-RB
Protein status:BO17785.pep:
Sequenced Size:1222

Clone Sequence Records

BO17785.3prime Sequence

633 bp (626 high quality bases) assembled on 2006-10-13

> BO17785.3prime
ATGGTCTAGAAAGCTTGCCTGCATTGCTTCGGTGTTGGCTTGCCAAATAA
CGGAATCATTTTCAGCCTTTTGCTCTTCTAGTTGTACGGATCTAACTGTT
ATTGAAAGGTTTCTGTTGTTTTTGTAGTCGCTGTTGGGCGATTTAATATT
TAGCCAATTCCTTGTTCCATCTTGGGCATACAATAAATCAAGTTGTGGAC
AGGTGCTTATGAATGAAAGCGTAGGTACTGATTGATGGCGCGGATGCTTA
TATTCAATTTTATTCAGTCTTGCCCTGGCGCAGCTTGTCTTCTCAAGATT
CATCAATTCAACATTCACGTTACTCGTTTTACGTAAAAGTGAGGATACTT
GGACATTAATAAAAGGTGTGGACTCTAATGCATTTGAAACGGATACCTGA
CTGCTAATTGTCATGGTGAAATCTGAGGCAGTTTCCACATCCCGATGCCA
TAACGTACCGGGAACTTGGCTCGCAATAAAAAAAGCTCCGGCTAATGTTA
TAATACTTGCCGCATAGCTTAGAGATAGTACAGACAGGCTGTTAACGAGG
AATTTCGTCCATTCAAGGCTAGGCAGCAACTGCACGAGCTCACTGTAAGT
GAGCCAACCTCTACGCAGTCCCCTGCTGTTCAG

BO17785.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:17:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RE 1203 CG40191-RE 264..877 633..19 3050 99.8 Minus
CG40191-RC 1518 CG40191-RC 766..1379 633..19 3050 99.8 Minus
CG40191-RD 1386 CG40191-RD 586..1199 633..19 3050 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1265410..1266023 633..19 3025 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 21:59:10 has no hits.

BO17785.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:09:06 Download gff for BO17785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RD 586..1204 11..633 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:16 Download gff for BO17785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RD 586..1204 11..633 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:16 Download gff for BO17785.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 1265410..1266028 11..633 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:09:06 Download gff for BO17785.3prime
Subject Subject Range Query Range Percent Splice Strand
2RHet 392043..392661 11..633 99   Minus

BO17785.5prime Sequence

743 bp (645 high quality bases) assembled on 2006-10-13

> BO17785.5prime
GAAGTTATCAGTCGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTATTTAAAAAGTTTTCACGAATATATGTATTAGCAAATTTTTTAAAT
TTCCAGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCT
CTACTATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCT
TTGCGGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCT
TTGCATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTG
CTCTTTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACT
CGGGCTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTA
ATGATTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGA
AGACTGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCG
AGCTCGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAG
CTATTCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCA
GGGACTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGC
CTAGCCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCT
CTAAGCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTT

BO17785.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:17:17 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RB 1579 CG40191-RB 66..792 17..743 3635 100 Plus
CG40191-RC 1518 CG40191-RC 280..918 105..743 3195 100 Plus
CG40191-RD 1386 CG40191-RD 100..738 105..743 3195 100 Plus
CG40191-RC 1518 CG40191-RC 246..283 17..54 190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1264458..1264841 17..400 1920 100 Plus
2R 25286936 2R 1265342..1265562 523..743 1105 100 Plus
2R 25286936 2R 1265171..1265294 401..524 620 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:10:38 has no hits.

BO17785.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:56 Download gff for BO17785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 63..792 14..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:09:07 Download gff for BO17785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 63..792 14..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:09:07 Download gff for BO17785.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 1264455..1264841 14..400 99 -> Plus
2R 1265171..1265293 401..523 100 -> Plus
2R 1265343..1265562 524..743 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:56 Download gff for BO17785.5prime
Subject Subject Range Query Range Percent Splice Strand
2RHet 391088..391474 14..400 99 -> Plus
2RHet 391804..391926 401..523 100 -> Plus
2RHet 391976..392195 524..743 100   Plus

BO17785.complete Sequence

1222 bp assembled on 2006-10-11

GenBank Submission: FJ634217

> BO17785.complete
GAAGTTATCAGTCGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAG
AGGTATTTAAAAAGTTTTCACGAATATATGTATTAGCAAATTTTTTAAAT
TTCCAGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCT
CTACTATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCT
TTGCGGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCT
TTGCATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTG
CTCTTTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACT
CGGGCTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTA
ATGATTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGA
AGACTGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCG
AGCTCGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAG
CTATTCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCA
GGGACTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGC
CTAGCCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCT
CTAAGCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGC
GAGCCAAGTTCCCGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAG
ATTTCACCATGACAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAG
TCCACACCTTTTATTAATGTCCAAGTATCCTCACTTTTACGTAAAACGAG
TAACGTGAATGTTGAATTGATGAATCTTGAGAAGACAAGCTGCGCCAGGG
CAAGACTGAATAAAATTGAATATAAGCATCCGCGCCATCAATCAGTACCT
ACGCTTTCATTCATAAGCACCTGTCCACAACTTGATTTATTGTATGCCCA
AGATGGAACAAGGAATTGGCTAAATATTAAATCGCCCAACAGCGACTACA
AAAACAACAGAAACCTTTCAATAACAGTTAGATCCGTACAACTAGAAGAG
CAAAAGGCTGAAAATGATTCCGTTATTTGGCAAGCCAACACCGAAGCAAT
GCAGGCAAGCTTTCTAGACCAT

BO17785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RB 1191 CG40191-PB 1..1188 17..1204 5940 100 Plus
CG40191-RC 1137 CG40191-PC 35..1134 105..1204 5500 100 Plus
CG40191-RD 1137 CG40191-PD 35..1134 105..1204 5500 100 Plus
CG40191-RC 1137 CG40191-PC 1..38 17..54 190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RB 1579 CG40191-RB 66..1253 17..1204 5940 100 Plus
CG40191-RC 1518 CG40191-RC 280..1379 105..1204 5500 100 Plus
CG40191-RD 1386 CG40191-RD 100..1199 105..1204 5500 100 Plus
CG40191-RC 1518 CG40191-RC 246..283 17..54 190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1265342..1266023 523..1204 3410 100 Plus
2R 25286936 2R 1264458..1264841 17..400 1920 100 Plus
2R 25286936 2R 1265171..1265294 401..524 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:35:32 has no hits.

BO17785.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:38 Download gff for BO17785.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 1..1191 17..1208 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:15 Download gff for BO17785.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 60..1255 14..1212 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:38 Download gff for BO17785.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 66..1253 17..1206 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:38 Download gff for BO17785.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 60..1255 14..1212 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:28 Download gff for BO17785.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 66..1253 17..1206 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:28 Download gff for BO17785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1265171..1265293 401..523 100 -> Plus
2R 1264458..1264841 17..400 100 -> Plus
2R 1265343..1266023 524..1206 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:38 Download gff for BO17785.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 391804..391926 401..523 100 -> Plus
2RHet 391091..391474 17..400 100 -> Plus
2RHet 391976..392656 524..1206 99   Plus

BO17785.pep Sequence

Translation from 16 to 1222

> BO17785.pep
MGRFKLCASPREVFKKFSRIYVLANFLNFQVMKYEDFIKRIRKSLYYGVG
TPDTEMSVSLPFAEYAADLFSETHRGHSLHRLSCVSAAQVHATPCSLIMA
LIYLDRLNVIDSGYSCRITPQQLFVVSLMISTKFYAGHDERFYLEDWASD
ACMTEDRLKAVELEFLSAMGWNIYISNELFFDKLRNVERSLAEQQGLRRG
WLTYSELVQLLPSLEWTKFLVNSLSVLSLSYAASIITLAGAFFIASQVPG
TLWHRDVETASDFTMTISSQVSVSNALESTPFINVQVSSLLRKTSNVNVE
LMNLEKTSCARARLNKIEYKHPRHQSVPTLSFISTCPQLDLLYAQDGTRN
WLNIKSPNSDYKNNRNLSITVRSVQLEEQKAENDSVIWQANTEAMQASFL
DH

BO17785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-PB 396 CG40191-PB 1..396 1..396 2032 100 Plus
CG40191-PC 378 CG40191-PC 1..378 1..396 1912 95.5 Plus
CG40191-PD 378 CG40191-PD 1..378 1..396 1912 95.5 Plus
CG40191-PA 378 CG40191-PA 1..378 1..396 1912 95.5 Plus
CG40191-PE 268 CG40191-PE 1..268 129..396 1371 100 Plus