Clone BO17786 Report

Search the DGRC for BO17786

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG7231-RC
Protein status:BO17786.pep: validated full length
Sequenced Size:934

Clone Sequence Records

BO17786.3prime Sequence

718 bp (654 high quality bases) assembled on 2006-10-13

> BO17786.3prime
ATGGTCTAGAAAGCTTGCTAACCGCTGCATCCAGCTGGACAGAGCCCAAA
AACAAAGGCTCATGAAACTGAAGCCAAACAGGGATTTGAAGGTGCTGGCT
CCGTTGCCGGGATTGTCCAGGTTCAATTGTGAGGCCAGCTCCTCCGGCAC
ATCCAGATAGACTCTATCCAAGCCGAAGCTGAAGATCAGTTTGCGCAACT
TATCCACATCCACATAGTCACCGGCAGACGACCAGATGGTCAGGGTGCTC
TCGTTTGTCTCGTTCACCGCGGCCACCAGTCGATGCAGTTGCTCCTCGCT
GTTGGCGGCAATGCCAGCGCGCACGGGAAAGGTTATGGCCTGGCCAGTGG
ATAGGACATTGTTCTCGCTCAGCGTTTCCAGCATGTCATCACACTGCTGC
TGCGTGTACTCGCCATCCCGGAAGTCGGCTCCCCAGTTAGTTGTCCAGCC
AATGGAGAGCACTGCCTGTTTGTAGCGCATACAGCCGGCGAAGAATCGGT
CCGCATCAACGGGTACGGTTCTATTCTGTTCCACGGGACCACTTAGAATA
TCGGCGTTTATCCACACAGGATACGTGGTAGGGTTCGGAATATTCACGTC
CAGAATGTCCAGGGAACCCTCGAATACCTCGATCGACTTGAAGTCGAGCT
TAACGCCCTTTTTTTGGTCCTCATGATCACGGTTGAAATTAATGATCTGG
TTGAGAAATTCCGACAGC

BO17786.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-PC 903 CG7231-RC 201..900 718..19 3500 100 Minus
CG7231-PA 912 CG7231-RA 346..909 582..19 2820 100 Minus
CG7231-PB 1077 CG7231-RB 511..1074 582..19 2820 100 Minus
CG7231-PA 912 CG7231-RA 201..336 718..583 680 100 Minus
CG7231-PB 1077 CG7231-RB 366..501 718..583 680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-RF 1264 CG7231-RF 482..1181 718..19 3500 100 Minus
CG7231-RD 1324 CG7231-RD 542..1241 718..19 3500 100 Minus
CG7231-RC 1256 CG7231-RC 474..1173 718..19 3500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7986139..7986702 582..19 2820 100 Minus
2L 23513712 2L 7985940..7986075 718..583 680 100 Minus
Blast to na_te.dros performed 2015-02-12 11:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 480..533 170..223 116 72.7 Plus

BO17786.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:10 Download gff for BO17786.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7231-PC 201..903 15..718 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:49:00 Download gff for BO17786.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 474..1176 15..718 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:46 Download gff for BO17786.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 474..1176 15..718 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:46 Download gff for BO17786.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7985940..7986075 583..718 100 -> Minus
2L 7986139..7986705 15..582 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:49:00 Download gff for BO17786.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7985940..7986075 583..718 100 -> Minus
arm_2L 7986139..7986705 15..582 99   Minus

BO17786.5prime Sequence

730 bp (642 high quality bases) assembled on 2006-10-13

> BO17786.5prime
GAAGTTATCAGTCGACATGATGAAGGTATGGGGCACAAATCTCACTGCCA
TTACCTGGGCCCATGCCGTCAACAGCCAGCAATTGCTGGACGAGGTCCTA
ACCGAAACCAGTGGCATTGACTTCATCGAAGCGGACATTGTGCTGGGCAA
ACTGAATGGCGATGGCGAGGACATGCCCATAATGGCCCATCCGCCGGCCA
ATGTCTCTGATCTTACGCTGTCGGAATTTCTCAACCAGATCATTAATTTC
AACCGTGATCATGAGGACCAAAAAAAGGGCGTTAAGCTCGACTTCAAGTC
GATCGAGGTATTCGAGGGTTCCCTGGACATTCTGGACGTGAATATTCCGA
ACCCTACCACGTATCCTGTGTGGATAAACGCCGATATTCTAAGTGGTCCC
GTGGAACAGAATAGAACCGTACCCGTTGATGCGGACCGATTCTTCGCCGG
CTGTATGCGCTACAAACAGGCAGTGCTCTCCATTGGCTGGACAACTAACT
GGGGAGCCGACTTCCGGGATGGCGAGTACACGCAGCAGCAGTGTGATGAC
ATGCTGGAAACGCTGAGCGAGAACAATGTCCTATCCACTGGCCAGGCCAT
AACCTTTCCCGTGCGCGCTGGCATTGCCGCCAACAGCGAGGAGCAACTGC
ATCGACTGGTGGCCGCGGTGAACGAGACAAACGAGAGCACCCTGACCATC
TGGTCGTCTGCCGGTGACTATGTGGATGTG

BO17786.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-PC 903 CG7231-RC 1..714 17..730 3570 100 Plus
CG7231-PA 912 CG7231-RA 346..723 353..730 1890 100 Plus
CG7231-PB 1077 CG7231-RB 511..888 353..730 1890 100 Plus
CG7231-PA 912 CG7231-RA 1..336 17..352 1680 100 Plus
CG7231-PB 1077 CG7231-RB 166..501 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-RF 1264 CG7231-RF 273..995 9..730 3575 99.7 Plus
CG7231-RD 1324 CG7231-RD 333..1055 9..730 3575 99.7 Plus
CG7231-RC 1256 CG7231-RC 265..987 9..730 3575 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7986139..7986516 353..730 1890 100 Plus
2L 23513712 2L 7985834..7986075 111..352 1210 100 Plus
2L 23513712 2L 7985675..7985770 17..112 480 100 Plus
Blast to na_te.dros performed on 2015-02-02 14:24:40 has no hits.

BO17786.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:11 Download gff for BO17786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7231-PC 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:16:52 Download gff for BO17786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 265..987 9..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:53:15 Download gff for BO17786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 265..987 9..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:53:15 Download gff for BO17786.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7985666..7985768 9..110 98 -> Plus
2L 7985834..7986075 111..352 100 -> Plus
2L 7986139..7986516 353..730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:16:52 Download gff for BO17786.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7985666..7985768 9..110 98 -> Plus
arm_2L 7985834..7986075 111..352 100 -> Plus
arm_2L 7986139..7986516 353..730 100   Plus

BO17786.complete Sequence

934 bp assembled on 2006-10-11

GenBank Submission: FJ638757

> BO17786.complete
GAAGTTATCAGTCGACATGATGAAGGTATGGGGCACAAATCTCACTGCCA
TTACCTGGGCCCATGCCGTCAACAGCCAGCAATTGCTGGACGAGGTCCTA
ACCGAAACCAGTGGCATTGACTTCATCGAAGCGGACATTGTGCTGGGCAA
ACTGAATGGCGATGGCGAGGACATGCCCATAATGGCCCATCCGCCGGCCA
ATGTCTCTGATCTTACGCTGTCGGAATTTCTCAACCAGATCATTAATTTC
AACCGTGATCATGAGGACCAAAAAAAGGGCGTTAAGCTCGACTTCAAGTC
GATCGAGGTATTCGAGGGTTCCCTGGACATTCTGGACGTGAATATTCCGA
ACCCTACCACGTATCCTGTGTGGATAAACGCCGATATTCTAAGTGGTCCC
GTGGAACAGAATAGAACCGTACCCGTTGATGCGGACCGATTCTTCGCCGG
CTGTATGCGCTACAAACAGGCAGTGCTCTCCATTGGCTGGACAACTAACT
GGGGAGCCGACTTCCGGGATGGCGAGTACACGCAGCAGCAGTGTGATGAC
ATGCTGGAAACGCTGAGCGAGAACAATGTCCTATCCACTGGCCAGGCCAT
AACCTTTCCCGTGCGCGCTGGCATTGCCGCCAACAGCGAGGAGCAACTGC
ATCGACTGGTGGCCGCGGTGAACGAGACAAACGAGAGCACCCTGACCATC
TGGTCGTCTGCCGGTGACTATGTGGATGTGGATAAGTTGCGCAAACTGAT
CTTCAGCTTCGGCTTGGATAGAGTCTATCTGGATGTGCCGGAGGAGCTGG
CCTCACAATTGAACCTGGACAATCCCGGCAACGGAGCCAGCACCTTCAAA
TCCCTGTTTGGCTTCAGTTTCATGAGCCTTTGTTTTTGGGCTCTGTCCAG
CTGGATGCAGCGGTTAGCAAGCTTTCTAGACCAT

BO17786.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-RF 903 CG7231-PF 1..900 17..916 4500 100 Plus
CG7231-RD 903 CG7231-PD 1..900 17..916 4500 100 Plus
CG7231-RC 903 CG7231-PC 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-RF 1264 CG7231-RF 282..1181 17..916 4500 100 Plus
CG7231-RD 1324 CG7231-RD 342..1241 17..916 4500 100 Plus
CG7231-RC 1256 CG7231-RC 274..1173 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7986139..7986702 353..916 2820 100 Plus
2L 23513712 2L 7985834..7986075 111..352 1210 100 Plus
2L 23513712 2L 7985675..7985770 17..112 480 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:27:25 has no hits.

BO17786.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:40 Download gff for BO17786.complete
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 1..903 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:17 Download gff for BO17786.complete
Subject Subject Range Query Range Percent Splice Strand
CG7231-RD 433..1344 9..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:53 Download gff for BO17786.complete
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 274..1173 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:40 Download gff for BO17786.complete
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 878..1789 9..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:10 Download gff for BO17786.complete
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 274..1173 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:10 Download gff for BO17786.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7985675..7985768 17..110 100 -> Plus
2L 7985834..7986075 111..352 100 -> Plus
2L 7986139..7986702 353..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:53 Download gff for BO17786.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7985675..7985768 17..110 100 -> Plus
arm_2L 7985834..7986075 111..352 100 -> Plus
arm_2L 7986139..7986702 353..918 99   Plus

BO17786.pep Sequence

Translation from 16 to 934

> BO17786.pep
MMKVWGTNLTAITWAHAVNSQQLLDEVLTETSGIDFIEADIVLGKLNGDG
EDMPIMAHPPANVSDLTLSEFLNQIINFNRDHEDQKKGVKLDFKSIEVFE
GSLDILDVNIPNPTTYPVWINADILSGPVEQNRTVPVDADRFFAGCMRYK
QAVLSIGWTTNWGADFRDGEYTQQQCDDMLETLSENNVLSTGQAITFPVR
AGIAANSEEQLHRLVAAVNETNESTLTIWSSAGDYVDVDKLRKLIFSFGL
DRVYLDVPEELASQLNLDNPGNGASTFKSLFGFSFMSLCFWALSSWMQRL
ASFLDH

BO17786.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-PF 300 CG7231-PF 1..300 1..300 1571 100 Plus
CG7231-PD 300 CG7231-PD 1..300 1..300 1571 100 Plus
CG7231-PC 300 CG7231-PC 1..300 1..300 1571 100 Plus
CG7231-PE 358 CG7231-PE 56..358 1..300 1557 99 Plus