Clone Sequence Records
BO17786.3prime Sequence
718 bp (654 high quality bases) assembled on 2006-10-13
> BO17786.3prime
ATGGTCTAGAAAGCTTGCTAACCGCTGCATCCAGCTGGACAGAGCCCAAA
AACAAAGGCTCATGAAACTGAAGCCAAACAGGGATTTGAAGGTGCTGGCT
CCGTTGCCGGGATTGTCCAGGTTCAATTGTGAGGCCAGCTCCTCCGGCAC
ATCCAGATAGACTCTATCCAAGCCGAAGCTGAAGATCAGTTTGCGCAACT
TATCCACATCCACATAGTCACCGGCAGACGACCAGATGGTCAGGGTGCTC
TCGTTTGTCTCGTTCACCGCGGCCACCAGTCGATGCAGTTGCTCCTCGCT
GTTGGCGGCAATGCCAGCGCGCACGGGAAAGGTTATGGCCTGGCCAGTGG
ATAGGACATTGTTCTCGCTCAGCGTTTCCAGCATGTCATCACACTGCTGC
TGCGTGTACTCGCCATCCCGGAAGTCGGCTCCCCAGTTAGTTGTCCAGCC
AATGGAGAGCACTGCCTGTTTGTAGCGCATACAGCCGGCGAAGAATCGGT
CCGCATCAACGGGTACGGTTCTATTCTGTTCCACGGGACCACTTAGAATA
TCGGCGTTTATCCACACAGGATACGTGGTAGGGTTCGGAATATTCACGTC
CAGAATGTCCAGGGAACCCTCGAATACCTCGATCGACTTGAAGTCGAGCT
TAACGCCCTTTTTTTGGTCCTCATGATCACGGTTGAAATTAATGATCTGG
TTGAGAAATTCCGACAGC
BO17786.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-PC | 903 | CG7231-RC | 201..900 | 718..19 | 3500 | 100 | Minus |
CG7231-PA | 912 | CG7231-RA | 346..909 | 582..19 | 2820 | 100 | Minus |
CG7231-PB | 1077 | CG7231-RB | 511..1074 | 582..19 | 2820 | 100 | Minus |
CG7231-PA | 912 | CG7231-RA | 201..336 | 718..583 | 680 | 100 | Minus |
CG7231-PB | 1077 | CG7231-RB | 366..501 | 718..583 | 680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-RF | 1264 | CG7231-RF | 482..1181 | 718..19 | 3500 | 100 | Minus |
CG7231-RD | 1324 | CG7231-RD | 542..1241 | 718..19 | 3500 | 100 | Minus |
CG7231-RC | 1256 | CG7231-RC | 474..1173 | 718..19 | 3500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7986139..7986702 | 582..19 | 2820 | 100 | Minus |
2L | 23513712 | 2L | 7985940..7986075 | 718..583 | 680 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 480..533 | 170..223 | 116 | 72.7 | Plus |
BO17786.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:10 Download gff for
BO17786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-PC | 201..903 | 15..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:49:00 Download gff for
BO17786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 474..1176 | 15..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:46 Download gff for
BO17786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 474..1176 | 15..718 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:46 Download gff for
BO17786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7985940..7986075 | 583..718 | 100 | -> | Minus |
2L | 7986139..7986705 | 15..582 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:49:00 Download gff for
BO17786.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7985940..7986075 | 583..718 | 100 | -> | Minus |
arm_2L | 7986139..7986705 | 15..582 | 99 | | Minus |
BO17786.5prime Sequence
730 bp (642 high quality bases) assembled on 2006-10-13
> BO17786.5prime
GAAGTTATCAGTCGACATGATGAAGGTATGGGGCACAAATCTCACTGCCA
TTACCTGGGCCCATGCCGTCAACAGCCAGCAATTGCTGGACGAGGTCCTA
ACCGAAACCAGTGGCATTGACTTCATCGAAGCGGACATTGTGCTGGGCAA
ACTGAATGGCGATGGCGAGGACATGCCCATAATGGCCCATCCGCCGGCCA
ATGTCTCTGATCTTACGCTGTCGGAATTTCTCAACCAGATCATTAATTTC
AACCGTGATCATGAGGACCAAAAAAAGGGCGTTAAGCTCGACTTCAAGTC
GATCGAGGTATTCGAGGGTTCCCTGGACATTCTGGACGTGAATATTCCGA
ACCCTACCACGTATCCTGTGTGGATAAACGCCGATATTCTAAGTGGTCCC
GTGGAACAGAATAGAACCGTACCCGTTGATGCGGACCGATTCTTCGCCGG
CTGTATGCGCTACAAACAGGCAGTGCTCTCCATTGGCTGGACAACTAACT
GGGGAGCCGACTTCCGGGATGGCGAGTACACGCAGCAGCAGTGTGATGAC
ATGCTGGAAACGCTGAGCGAGAACAATGTCCTATCCACTGGCCAGGCCAT
AACCTTTCCCGTGCGCGCTGGCATTGCCGCCAACAGCGAGGAGCAACTGC
ATCGACTGGTGGCCGCGGTGAACGAGACAAACGAGAGCACCCTGACCATC
TGGTCGTCTGCCGGTGACTATGTGGATGTG
BO17786.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-PC | 903 | CG7231-RC | 1..714 | 17..730 | 3570 | 100 | Plus |
CG7231-PA | 912 | CG7231-RA | 346..723 | 353..730 | 1890 | 100 | Plus |
CG7231-PB | 1077 | CG7231-RB | 511..888 | 353..730 | 1890 | 100 | Plus |
CG7231-PA | 912 | CG7231-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG7231-PB | 1077 | CG7231-RB | 166..501 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-RF | 1264 | CG7231-RF | 273..995 | 9..730 | 3575 | 99.7 | Plus |
CG7231-RD | 1324 | CG7231-RD | 333..1055 | 9..730 | 3575 | 99.7 | Plus |
CG7231-RC | 1256 | CG7231-RC | 265..987 | 9..730 | 3575 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7986139..7986516 | 353..730 | 1890 | 100 | Plus |
2L | 23513712 | 2L | 7985834..7986075 | 111..352 | 1210 | 100 | Plus |
2L | 23513712 | 2L | 7985675..7985770 | 17..112 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 14:24:40 has no hits.
BO17786.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:11 Download gff for
BO17786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-PC | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:16:52 Download gff for
BO17786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 265..987 | 9..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:53:15 Download gff for
BO17786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 265..987 | 9..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:53:15 Download gff for
BO17786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7985666..7985768 | 9..110 | 98 | -> | Plus |
2L | 7985834..7986075 | 111..352 | 100 | -> | Plus |
2L | 7986139..7986516 | 353..730 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:16:52 Download gff for
BO17786.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7985666..7985768 | 9..110 | 98 | -> | Plus |
arm_2L | 7985834..7986075 | 111..352 | 100 | -> | Plus |
arm_2L | 7986139..7986516 | 353..730 | 100 | | Plus |
BO17786.complete Sequence
934 bp assembled on 2006-10-11
GenBank Submission: FJ638757
> BO17786.complete
GAAGTTATCAGTCGACATGATGAAGGTATGGGGCACAAATCTCACTGCCA
TTACCTGGGCCCATGCCGTCAACAGCCAGCAATTGCTGGACGAGGTCCTA
ACCGAAACCAGTGGCATTGACTTCATCGAAGCGGACATTGTGCTGGGCAA
ACTGAATGGCGATGGCGAGGACATGCCCATAATGGCCCATCCGCCGGCCA
ATGTCTCTGATCTTACGCTGTCGGAATTTCTCAACCAGATCATTAATTTC
AACCGTGATCATGAGGACCAAAAAAAGGGCGTTAAGCTCGACTTCAAGTC
GATCGAGGTATTCGAGGGTTCCCTGGACATTCTGGACGTGAATATTCCGA
ACCCTACCACGTATCCTGTGTGGATAAACGCCGATATTCTAAGTGGTCCC
GTGGAACAGAATAGAACCGTACCCGTTGATGCGGACCGATTCTTCGCCGG
CTGTATGCGCTACAAACAGGCAGTGCTCTCCATTGGCTGGACAACTAACT
GGGGAGCCGACTTCCGGGATGGCGAGTACACGCAGCAGCAGTGTGATGAC
ATGCTGGAAACGCTGAGCGAGAACAATGTCCTATCCACTGGCCAGGCCAT
AACCTTTCCCGTGCGCGCTGGCATTGCCGCCAACAGCGAGGAGCAACTGC
ATCGACTGGTGGCCGCGGTGAACGAGACAAACGAGAGCACCCTGACCATC
TGGTCGTCTGCCGGTGACTATGTGGATGTGGATAAGTTGCGCAAACTGAT
CTTCAGCTTCGGCTTGGATAGAGTCTATCTGGATGTGCCGGAGGAGCTGG
CCTCACAATTGAACCTGGACAATCCCGGCAACGGAGCCAGCACCTTCAAA
TCCCTGTTTGGCTTCAGTTTCATGAGCCTTTGTTTTTGGGCTCTGTCCAG
CTGGATGCAGCGGTTAGCAAGCTTTCTAGACCAT
BO17786.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-RF | 903 | CG7231-PF | 1..900 | 17..916 | 4500 | 100 | Plus |
CG7231-RD | 903 | CG7231-PD | 1..900 | 17..916 | 4500 | 100 | Plus |
CG7231-RC | 903 | CG7231-PC | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-RF | 1264 | CG7231-RF | 282..1181 | 17..916 | 4500 | 100 | Plus |
CG7231-RD | 1324 | CG7231-RD | 342..1241 | 17..916 | 4500 | 100 | Plus |
CG7231-RC | 1256 | CG7231-RC | 274..1173 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7986139..7986702 | 353..916 | 2820 | 100 | Plus |
2L | 23513712 | 2L | 7985834..7986075 | 111..352 | 1210 | 100 | Plus |
2L | 23513712 | 2L | 7985675..7985770 | 17..112 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:25 has no hits.
BO17786.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:40 Download gff for
BO17786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 1..903 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:17 Download gff for
BO17786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RD | 433..1344 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:53 Download gff for
BO17786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 274..1173 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:40 Download gff for
BO17786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 878..1789 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:10 Download gff for
BO17786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 274..1173 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:10 Download gff for
BO17786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7985675..7985768 | 17..110 | 100 | -> | Plus |
2L | 7985834..7986075 | 111..352 | 100 | -> | Plus |
2L | 7986139..7986702 | 353..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:53 Download gff for
BO17786.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7985675..7985768 | 17..110 | 100 | -> | Plus |
arm_2L | 7985834..7986075 | 111..352 | 100 | -> | Plus |
arm_2L | 7986139..7986702 | 353..918 | 99 | | Plus |
BO17786.pep Sequence
Translation from 16 to 934
> BO17786.pep
MMKVWGTNLTAITWAHAVNSQQLLDEVLTETSGIDFIEADIVLGKLNGDG
EDMPIMAHPPANVSDLTLSEFLNQIINFNRDHEDQKKGVKLDFKSIEVFE
GSLDILDVNIPNPTTYPVWINADILSGPVEQNRTVPVDADRFFAGCMRYK
QAVLSIGWTTNWGADFRDGEYTQQQCDDMLETLSENNVLSTGQAITFPVR
AGIAANSEEQLHRLVAAVNETNESTLTIWSSAGDYVDVDKLRKLIFSFGL
DRVYLDVPEELASQLNLDNPGNGASTFKSLFGFSFMSLCFWALSSWMQRL
ASFLDH
BO17786.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-PF | 300 | CG7231-PF | 1..300 | 1..300 | 1571 | 100 | Plus |
CG7231-PD | 300 | CG7231-PD | 1..300 | 1..300 | 1571 | 100 | Plus |
CG7231-PC | 300 | CG7231-PC | 1..300 | 1..300 | 1571 | 100 | Plus |
CG7231-PE | 358 | CG7231-PE | 56..358 | 1..300 | 1557 | 99 | Plus |