Clone Sequence Records
BO17791.3prime Sequence
691 bp (612 high quality bases) assembled on 2006-10-13
> BO17791.3prime
ATGGTCTAGAAAGCTTGCGGAAGCCTGCAGGATATTCTCTTGAGCCTTGA
TCACCTCCGTAGCCACTTTTGTACTGGAATGAGCGAGCACCAAATTGCTC
TCCACCTTGATCTGTGATTGTTTCTCCACCGGAACATCACCCTGGGATGA
CGCTAAAGTTTGATTGTGATTTCCGGCGTCATGCTTGGCCTGGTGAACCT
GCAACAGACCTTGATTGATGCTGGTGAAGTTGCACTGGTTGCATTTGTAA
ATGATTGTGGACAGCTCCTGTTCAGGATGGCGGGTCTGAAGGTGTATCCG
AAAGGCGGTGCTCTGGATGGCTCGGAAGTCGCAGTGCGGGCAGGAGTAGC
GTTTACTCTCCTTGTGCGTGGCTAGGTGGCGGCGATAGGCATTGTGATCG
CTGGTCTCATGATCACAGGTGTCGCAGCGGAAACGTTTATGCTCCTGATG
GCTCCGAAGATGAAGTCTCAGGCTGCTCTTAGAACCAAAACGGCGCTGGC
ACTCGGGGCATTCCAGCTGTTCGTTTCGCTCTTTGCATAGGTGCTCCCTT
AGGGTTTTCTTCTGCTTGAAGGCGGCGCCGCAATCTTCGCAGCGATGCAT
TACAACGGGATTACCTTCTGGTCCCACGGAAATCTGCTCGTTCGACTGCT
TTCCCATGCCCAATCCTTGAGTGCGATGCAAGCGACGGTGA
BO17791.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1233-PB | 3390 | CG1233-RB | 2715..3387 | 691..19 | 3365 | 100 | Minus |
| CG1233-PA | 2826 | CG1233-RA | 2151..2823 | 691..19 | 3365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1233-RA | 4064 | CG1233-RA | 2954..3626 | 691..19 | 3365 | 100 | Minus |
| CG1233-RB | 4011 | CG1233-RB | 2901..3573 | 691..19 | 3365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 364510..364903 | 691..298 | 1970 | 100 | Minus |
| 3L | 28110227 | 3L | 364964..365243 | 298..19 | 1400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:03:07 has no hits.
BO17791.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:15 Download gff for
BO17791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-PA | 2152..2826 | 18..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:02:12 Download gff for
BO17791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 2902..3573 | 19..690 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:19 Download gff for
BO17791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 2902..3573 | 19..690 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:19 Download gff for
BO17791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 364511..364903 | 298..690 | 100 | -> | Minus |
| 3L | 364965..365243 | 19..297 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:02:12 Download gff for
BO17791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 364511..364903 | 298..690 | 100 | -> | Minus |
| arm_3L | 364965..365243 | 19..297 | 100 | | Minus |
BO17791.5prime Sequence
677 bp (629 high quality bases) assembled on 2006-10-13
> BO17791.5prime
GAAGTTATCAGTCGACATGAGCGATGCGACCTATCCGGGATATTACGGCG
GCAACCAGCTGCTCCCGTTGTCGCATCCGCATCCTACACATCCGCACCAA
GACCTGTCGCTTTCCACGCCGGTTCACTCCTTGGAGCAGGACTCCAACTT
CGGGGGATTCTTTGACGAAGAGCTGGTCATCGGATCGGGATCCGGATCTG
CCTCCGCGTCTGCTGCAAACACCACCCCTTCTGGAACTACTTTGTGGCTG
GCCGATGGCGGGAATCGATCACCTACTGAGGTGGCGGTGGAGTCCCAGCC
CAATCAGGGCATTCCCTTTGTCCAGATCCACACCACCGACTTGCAGCAAC
CAGAGAAAAGCTACCGCAATGCCTTCCGCAGGCGTACAGCGGAAATTAAG
TCGGAGGAACTAATCAAGTCGGAACTTGCGGAAGCGGCAGCCAAGGATCG
CCTGAATGCCACGCCAACGCCACCAACTCGAAATTCCAGCTGCGCCAGCG
TGGAGGGCAAGGCAATCATTCAGGAGGGTCCGCCTCTTATCCTGCGCTGT
CCTAATTGTCCATTCTTAAGCCTCTGCCAGATGCGTCTTCAGCAACACCT
TAGTCAGGGCAACTGCTATATGGAGCAGCACAGGAAACAGTGTCCAGGCT
GCTCAAACATTTTCTACACCAGCGATG
BO17791.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1233-PB | 3390 | CG1233-RB | 1..661 | 17..677 | 3305 | 100 | Plus |
| CG1233-PA | 2826 | CG1233-RA | 1..97 | 581..677 | 485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1233-RB | 4011 | CG1233-RB | 187..847 | 17..677 | 3305 | 100 | Plus |
| CG1233-RA | 4064 | CG1233-RA | 278..900 | 55..677 | 3115 | 100 | Plus |
| CG1233-RA | 4064 | CG1233-RA | 187..228 | 17..58 | 210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 361749..362342 | 55..648 | 2970 | 100 | Plus |
| 3L | 28110227 | 3L | 361658..361699 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 01:30:57 has no hits.
BO17791.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:15 Download gff for
BO17791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-PB | 1..661 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:31 Download gff for
BO17791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 179..847 | 9..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:42 Download gff for
BO17791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 179..847 | 9..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:42 Download gff for
BO17791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 361650..361699 | 9..58 | 92 | -> | Plus |
| 3L | 361753..362341 | 59..647 | 100 | -> | Plus |
| 3L | 362427..362456 | 648..677 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:31 Download gff for
BO17791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 361650..361699 | 9..58 | 92 | -> | Plus |
| arm_3L | 361753..362341 | 59..647 | 100 | -> | Plus |
| arm_3L | 362427..362456 | 648..677 | 100 | | Plus |
BO17791.complete Sequence
3421 bp assembled on 2010-05-05
GenBank Submission: KX797628
> BO17791.complete
GAAGTTATCAGTCGACATGAGCGATGCGACCTATCCGGGATATTACGGCG
GCAACCAGCTGCTCCCGTTGTCGCATCCGCATCCTACACATCCGCACCAA
GACCTGTCGCTTTCCACGCCGGTTCACTCCTTGGAGCAGGACTCCAACTT
CGGGGGATTCTTTGACGAAGAGCTGGTCATCGGATCGGGATCCGGATCTG
CCTCCGCGTCTGCTGCAAACACCACCCCTTCTGGAACTACTTTGTGGCTG
GCCGATGGCGGGAATCGATCACCTACTGAGGTGGCGGTGGAGTCCCAGCC
CAATCAGGGCATTCCCTTTGTCCAGATCCACACCACCGACTTGCAGCAAC
CAGAGAAAAGCTACCGCAATGCCTTCCGCAGGCGTACAGCGGAAATTAAG
TCGGAGGAACTAATCAAGTCGGAACTTGCGGAAGCGGCAGCCAAGGATCG
CCTGAATGCCACGCCAACGCCACCAACTCGAAATTCCAGCTGCGCCAGCG
TGGAGGGCAAGGCAATCATTCAGGAGGGTCCGCCTCTTATCCTGCGCTGT
CCTAATTGTCCATTCTTAAGCCTCTGCCAGATGCGTCTTCAGCAACACCT
TAGTCAGGGCAACTGCTATATGGAGCAGCACAGGAAACAGTGTCCAGGCT
GCTCAAACATTTTCTACACCAGCGATGCGCTCAGCTTGCACCTCAGCTTG
GACCATCAAATGGAGGACAGTGAGACACTTGCGCTTATGGGCAGAAAAGT
CACTGAAGCACAAACTAAAAAGCAGACTCAGATGTCGCAGAGCCAAAATC
GACCCAAGAGCCGCATCTTTATAAAAAGCGTAGATTGCCTAAGGGAGCCA
CTCCCGGATTTCCCGCCCTTAATGCCGGATAGCGGGTCCGCCGCTAACAT
TCTTGATCTGCTGGAAGGTGTGGCTGTAGGTGCATCGCCGACCGAACAGA
CAATGCCAACAGCACCTGCTGCGAATTTACCAGCTCCGCCGCCAAAGCCC
ATCCAGAAGATCTCCATCAAGAGCGTGGACGTGCTCAGGGAGACCGCTTT
GCTGCCGTTCGACTTCCAGCTGCAGAACCATTCGGTCAATACGGACAATA
GTCTCCCTGAAGTTCCTGATGTTGTCGGGGAGCCGGAGAAGCCGCGCCAG
CCGAAGATTTATATCCGCAATGTAGACATCCTCAAGGAACCGATGGTTTT
GCCATCTGCTCTGCCCGGTCTGGGATTCAATAGCACCATGCCGTCGGCAG
CAGAGCCAGGACAAAGTGGCCTGGTTGTAGGAGGAGCAGATGGTGATGTC
TTCCAGTCGGAGACACTACTAACGCCCACGTGTCAGCTTCCAGGATTCGA
GCCCAGCCTCGCCCCGCTCGCACAGATGTGTTCCGAGGCATTTCCCTTTG
ATTCTGTGCTGAATGGCAATGGAGCACCTGCCGCCCATGTGGAAAACACA
CGTTTTAGTGCTTTGGACCTTGATTTTGGTGTGGATTTTGTTTCGGAAGA
GGCAACTCCGCCACCTCCTCTGAATGATCCACTGACAATGATGGAACCAC
AACCTGTCCAGCTGGAGCACTACATGCCACCTACGGCTCCCATTACGACC
AAGCAAAAGATCTTCATCAAAAACGTGGACATTTTGAAAGCACCGCAGAG
GGGCACCTTGCACCTGCGCACTGTGGACGAACTAAACCTAATGAATCGCA
CCGAGGTGGAGCACTTAATCGTGCCCAATCTAGAACCGATGGCAATGACC
ATGATGGAGCTTCCGCCCGTGCAGCAGCAGCCAATGGAAGTAACTTCACA
GCTCAAGGGACCAACGGAAACGCTTGGCGAATTTCAGCCGTCTATTAGTG
AAAGTTGGCCTAGCGAGGATGGCTATGACCTACCTGAGGATCTGGAGTGC
TGGCCGTGGATGGAAGATGCTGTACCAGAAGCTGGACTCGTTCTGCCTAC
ACCCAGTGAAGTGGCTAATGCTCCCCCACTCGATGGTTTGTCTCACAATG
CAGTGGATCTGCTAGTCAAGGATTTTTCGCATTTGTACGCCGCACCACCG
GAGGACACACAAAACGCAGAAGAAGGAACTGCAGCGGGAGGACGAGGGAC
AGTGCCACCTCTAGTACCGGTAACATCTTCGGAAGGGACAGCCTCTGTTG
CTCAAAGTGCAGCATTAGGTAGTTTGCCGGTTCCGCCGCTGGTTCCCTTG
GCAGCCGAGATGAATGCTGCTATCGAAAAGCCAGCCCGCATCTATGTGGC
CAATAATCTTCTTCCCGCCGCCGTGGACCCACCGCTTCTTGGAGGCGGCA
CCTCGGTCAGGGGCCGTCCCTACGGAGCGAAGCACTCTGGTGGAGCAGCT
TCCAAAAGAAAACTCTCTCTGGGCCCAAATCAAGTGCCAGAGGGAGGCAA
GTGCCTTGTGGAGGGCTGTATGTTCCGTTTCAAATCACCCGTAACTTTGG
AGTATCACGGCAGATGCCACAATGGATCCCTCAGCTCAAACCAACCCGTT
GTGTGCCCGGAATGCAAGTCCAGCAACTTTAGCAATTGGAACTGTCTGCA
TACGCATCTCTGGCGGACCCACCAAATCGACATGGAGCTGTACTCCTGCC
AGCTGTGCAGCTTTAAGACGCCCATCTATTCGCGTCTCGTGAACACCCAC
GCTAAGATCCACTCGGAGGAGCGAAACTATAAGTGCGAGCAGTGTGGCAA
GGGATTTAAGAACACCAAGCAATTGAAGAATCACCGTCGCTTGCATCGCA
CTCAAGGATTGGGCATGGGAAAGCAGTCGAACGAGCAGATTTCCGTGGGA
CCAGAAGGTAATCCCGTTGTAATGCATCGCTGCGAAGATTGCGGCGCCGC
CTTCAAGCAGAAGAAAACCCTAAGGGAGCACCTATGCAAAGAGCGAAACG
AACAGCTGGAATGCCCCGAGTGCCAGCGCCGTTTTGGTTCTAAGAGCAGC
CTGAGACTTCATCTTCGGAGCCATCAGGAGCATAAACGTTTCCGCTGCGA
CACCTGTGATCATGAGACCAGCGATCACAATGCCTATCGCCGCCACCTAG
CCACGCACAAGGAGAGTAAACGCTACTCCTGCCCGCACTGCGACTTCCGA
GCCATCCAGAGCACCGCCTTTCGGATACACCTTCAGACCCGCCATCCTGA
ACAGGAGCTGTCCACAATCATTTACAAATGCAACCAGTGCAACTTCACCA
GCATCAATCAAGGTCTGTTGCAGGTTCACCAGGCCAAGCATGACGCCGGA
AATCACAATCAAACTTTAGCGTCATCCCAGGGTGATGTTCCGGTGGAGAA
ACAATCACAGATCAAGGTGGAGAGCAATTTGGTGCTCGCTCATTCCAGTA
CAAAAGTGGCTACGGAGGTGATCAAGGCTCAAGAGAATATCCTGCAGGCT
TCCGCAAGCTTTCTAGACCAT
BO17791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1233-RB | 3390 | CG1233-PB | 1..3387 | 17..3403 | 16920 | 100 | Plus |
| CG1233-RA | 2826 | CG1233-PA | 1..2823 | 581..3403 | 14100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1233-RB | 4011 | CG1233-RB | 187..3573 | 17..3403 | 16920 | 100 | Plus |
| CG1233-RA | 4064 | CG1233-RA | 278..3626 | 55..3403 | 16730 | 100 | Plus |
| CG1233-RA | 4064 | CG1233-RA | 187..228 | 17..58 | 210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 362424..364903 | 645..3124 | 12385 | 100 | Plus |
| 3L | 28110227 | 3L | 361749..362342 | 55..648 | 2970 | 100 | Plus |
| 3L | 28110227 | 3L | 364964..365243 | 3124..3403 | 1400 | 100 | Plus |
| 3L | 28110227 | 3L | 361658..361699 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:32:40 has no hits.
BO17791.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:18 Download gff for
BO17791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 181..3567 | 17..3405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:53 Download gff for
BO17791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 187..3573 | 17..3405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:22 Download gff for
BO17791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 187..3573 | 17..3405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:22 Download gff for
BO17791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 361658..361699 | 17..58 | 100 | -> | Plus |
| 3L | 361753..362341 | 59..647 | 100 | -> | Plus |
| 3L | 362427..364903 | 648..3124 | 99 | -> | Plus |
| 3L | 364965..365243 | 3125..3405 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:53 Download gff for
BO17791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 361658..361699 | 17..58 | 100 | -> | Plus |
| arm_3L | 361753..362341 | 59..647 | 100 | -> | Plus |
| arm_3L | 362427..364903 | 648..3124 | 99 | -> | Plus |
| arm_3L | 364965..365243 | 3125..3405 | 99 | | Plus |
BO17791.pep Sequence
Translation from 16 to 3421
> BO17791.pep
MSDATYPGYYGGNQLLPLSHPHPTHPHQDLSLSTPVHSLEQDSNFGGFFD
EELVIGSGSGSASASAANTTPSGTTLWLADGGNRSPTEVAVESQPNQGIP
FVQIHTTDLQQPEKSYRNAFRRRTAEIKSEELIKSELAEAAAKDRLNATP
TPPTRNSSCASVEGKAIIQEGPPLILRCPNCPFLSLCQMRLQQHLSQGNC
YMEQHRKQCPGCSNIFYTSDALSLHLSLDHQMEDSETLALMGRKVTEAQT
KKQTQMSQSQNRPKSRIFIKSVDCLREPLPDFPPLMPDSGSAANILDLLE
GVAVGASPTEQTMPTAPAANLPAPPPKPIQKISIKSVDVLRETALLPFDF
QLQNHSVNTDNSLPEVPDVVGEPEKPRQPKIYIRNVDILKEPMVLPSALP
GLGFNSTMPSAAEPGQSGLVVGGADGDVFQSETLLTPTCQLPGFEPSLAP
LAQMCSEAFPFDSVLNGNGAPAAHVENTRFSALDLDFGVDFVSEEATPPP
PLNDPLTMMEPQPVQLEHYMPPTAPITTKQKIFIKNVDILKAPQRGTLHL
RTVDELNLMNRTEVEHLIVPNLEPMAMTMMELPPVQQQPMEVTSQLKGPT
ETLGEFQPSISESWPSEDGYDLPEDLECWPWMEDAVPEAGLVLPTPSEVA
NAPPLDGLSHNAVDLLVKDFSHLYAAPPEDTQNAEEGTAAGGRGTVPPLV
PVTSSEGTASVAQSAALGSLPVPPLVPLAAEMNAAIEKPARIYVANNLLP
AAVDPPLLGGGTSVRGRPYGAKHSGGAASKRKLSLGPNQVPEGGKCLVEG
CMFRFKSPVTLEYHGRCHNGSLSSNQPVVCPECKSSNFSNWNCLHTHLWR
THQIDMELYSCQLCSFKTPIYSRLVNTHAKIHSEERNYKCEQCGKGFKNT
KQLKNHRRLHRTQGLGMGKQSNEQISVGPEGNPVVMHRCEDCGAAFKQKK
TLREHLCKERNEQLECPECQRRFGSKSSLRLHLRSHQEHKRFRCDTCDHE
TSDHNAYRRHLATHKESKRYSCPHCDFRAIQSTAFRIHLQTRHPEQELST
IIYKCNQCNFTSINQGLLQVHQAKHDAGNHNQTLASSQGDVPVEKQSQIK
VESNLVLAHSSTKVATEVIKAQENILQASASFLDH
BO17791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1233-PB | 1129 | CG1233-PB | 1..1129 | 1..1129 | 5995 | 100 | Plus |
| CG1233-PA | 941 | CG1233-PA | 1..941 | 189..1129 | 5003 | 100 | Plus |
| CG11456-PC | 445 | CG11456-PC | 107..373 | 801..1078 | 314 | 28.8 | Plus |
| CG11456-PA | 445 | CG11456-PA | 107..373 | 801..1078 | 314 | 28.8 | Plus |
| CG5245-PA | 501 | CG5245-PA | 80..270 | 857..1075 | 283 | 28.6 | Plus |
