Clone Sequence Records
BO17792.3prime Sequence
669 bp (601 high quality bases) assembled on 2006-10-13
> BO17792.3prime
ATGGTCTAGAAAGCTTGCGAATAAATCCTCTTCCTCAGGTGTCAAGGGTC
TAGCTGGGTGCTTGGACCACAAGTAGCGGTTCTTCACCGGCGACAAGTAC
GAATCCCGGGCTACGGGGCTCGAGGCACGGGGCACCGAGGTGGCGCGGAA
GGGCACCAGGTCATCCACGTCCCACCAGAAGGGATCGCGCACAATCGAGG
AGATCGGCAAGTTGGGGCTGGGGCTCAGCAGATCCCTGAAGCGGTTGCGT
GGGTGAAAGATGGGGAGTCCCTCAGCATCGTAGGCGACTTCGGTGGGACG
GGGTCCCCAGCGACCGGCTTTCACGGGAGTGGGACTTGGCGAACCGGCGC
GCTCAAAGATACCGAGTGGCCGACTGGGCGCATCAGCTGGCGCCGAATCA
GCCTCGGCGATCGCGGGCAACTTACGTTCAAAGAGTTCGTCCAGCGGCTC
CAGGGAGCTGGCACGGAAGCTGGGCCGCGTGAACGGGGCCAAGCTGGTGG
CACGATCGAAGACCGAGGGTCCTCCGCGTGGCACGCTGCCCTCGCGGTTC
CAGTAGCTCGGCGGTGGCACGTACGGCTCGCTGCCGGCACGGGTCGTCCT
GGCAAGGCGGAACGGCGAGGCCGAGCGACGAGCCTTGTTGAGCTCAACCA
GCAGCTTGTCCTCTGGCTC
BO17792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6803-PB | 1098 | Zeelin1-RB | 445..1095 | 669..19 | 3180 | 99.5 | Minus |
CG6803-PD | 939 | Zeelin1-RD | 445..689 | 669..425 | 1175 | 99.1 | Minus |
CG6803-PD | 939 | Zeelin1-RD | 689..921 | 269..37 | 1140 | 99.5 | Minus |
CG6803-PE | 501 | Zeelin1-RE | 445..484 | 669..630 | 175 | 97.5 | Minus |
CG6803-PA | 474 | Zeelin1-RA | 424..462 | 669..631 | 170 | 97.4 | Minus |
CG6803-PC | 507 | Zeelin1-RC | 445..481 | 669..633 | 160 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RB | 2110 | CG6803-RB | 559..1209 | 669..19 | 3210 | 99.5 | Minus |
Mf-RM | 1939 | CG553-RM | 559..1191 | 669..37 | 3120 | 99.5 | Minus |
Mf-RL | 1905 | CG553-RL | 525..1157 | 669..37 | 3120 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15173980..15174344 | 269..633 | 1810 | 99.7 | Plus |
3R | 32079331 | 3R | 15172600..15172831 | 39..270 | 1145 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:33:08 has no hits.
BO17792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:16 Download gff for
BO17792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PB | 445..1098 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:38:00 Download gff for
BO17792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 559..1212 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:58 Download gff for
BO17792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 559..1212 | 15..669 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:58 Download gff for
BO17792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15172083..15172106 | 15..38 | 91 | <- | Plus |
3R | 15172600..15172830 | 39..269 | 99 | <- | Plus |
3R | 15173981..15174343 | 270..632 | 99 | <- | Plus |
3R | 15176184..15176220 | 633..669 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:38:00 Download gff for
BO17792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10998322..10998552 | 39..269 | 99 | <- | Plus |
arm_3R | 10997805..10997828 | 15..38 | 91 | <- | Plus |
arm_3R | 10999703..11000065 | 270..632 | 99 | <- | Plus |
arm_3R | 11001906..11001942 | 633..669 | 97 | | Plus |
BO17792.5prime Sequence
731 bp (603 high quality bases) assembled on 2006-10-13
> BO17792.5prime
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGAACCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCCGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGTAAGTTGCCCGCGATCGCCAAGGCTG
BO17792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6803-PB | 1098 | Zeelin1-RB | 1..715 | 17..731 | 3500 | 99.5 | Plus |
CG6803-PD | 939 | Zeelin1-RD | 1..689 | 17..705 | 3395 | 99.7 | Plus |
CG6803-PE | 501 | Zeelin1-RE | 1..484 | 17..500 | 2420 | 100 | Plus |
CG6803-PC | 507 | Zeelin1-RC | 1..481 | 17..497 | 2405 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 1..301 | 17..317 | 1505 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 302..462 | 339..499 | 805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RM | 1939 | CG553-RM | 115..829 | 17..731 | 3530 | 99.6 | Plus |
Mf-RL | 1905 | CG553-RL | 81..795 | 17..731 | 3530 | 99.6 | Plus |
Mf-RB | 2110 | CG6803-RB | 115..829 | 17..731 | 3530 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15174110..15174344 | 731..497 | 1130 | 98.7 | Minus |
3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15176184..15176295 | 497..386 | 560 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:12:26 has no hits.
BO17792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:17 Download gff for
BO17792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PB | 1..715 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:14:41 Download gff for
BO17792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 105..829 | 7..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:22 Download gff for
BO17792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 105..829 | 7..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:22 Download gff for
BO17792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15174110..15174343 | 498..731 | 98 | <- | Minus |
3R | 15176184..15176293 | 388..497 | 100 | <- | Minus |
3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
3R | 15179039..15179139 | 7..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:14:41 Download gff for
BO17792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10999832..11000065 | 498..731 | 98 | <- | Minus |
arm_3R | 11001906..11002015 | 388..497 | 100 | <- | Minus |
arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
arm_3R | 11004761..11004861 | 7..107 | 96 | | Minus |
BO17792.complete Sequence
1129 bp assembled on 2006-10-11
GenBank Submission: FJ634218
> BO17792.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGTAAGTTGCCCGCGATCGCCGAGGCTGATTCGGCGCCAGCTGATGC
GCCCAGTCGGCCACTCGGTATCTTTGAGCGCGCCGGTTCGCCAAGTCCCA
CTCCCGTGAAAGCCGGTCGCTGGGGACCCCGTCCCACCGAAGTCGCCTAC
GATGCTGAGGGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCT
GCTGAGCCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCT
TCTGGTGGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCC
CGTGCCTCGAGCCCCGTAGCCCGGGATTCGTACTTGTCGCCGGTGAAGAA
CCGCTACTTGTGGTCCAAGCACCCAGCTAGACCCTTGACACCTGAGGAAG
AGGATTTATTCGCAAGCTTTCTAGACCAT
BO17792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RB | 1098 | CG6803-PB | 1..1095 | 17..1111 | 5460 | 99.9 | Plus |
Mf-RM | 1095 | CG6803-PM | 1..1077 | 17..1093 | 5370 | 99.9 | Plus |
Mf-RL | 1095 | CG6803-PL | 1..1077 | 17..1093 | 5370 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RB | 2110 | CG6803-RB | 115..1209 | 17..1111 | 5460 | 99.9 | Plus |
Mf-RM | 1939 | CG553-RM | 115..1191 | 17..1093 | 5370 | 99.9 | Plus |
Mf-RL | 1905 | CG553-RL | 81..1157 | 17..1093 | 5370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15173980..15174344 | 861..497 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 15172600..15172831 | 1091..860 | 1145 | 99.6 | Minus |
3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15176184..15176295 | 497..386 | 560 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:07:57 has no hits.
BO17792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:41 Download gff for
BO17792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 1..1098 | 17..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:18 Download gff for
BO17792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 105..1212 | 7..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:23 Download gff for
BO17792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 120..1209 | 22..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:41 Download gff for
BO17792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 105..1212 | 7..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:49 Download gff for
BO17792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RB | 120..1209 | 22..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:49 Download gff for
BO17792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
3R | 15173981..15174343 | 498..860 | 100 | <- | Minus |
3R | 15172600..15172830 | 861..1091 | 99 | <- | Minus |
3R | 15176184..15176293 | 388..497 | 100 | <- | Minus |
3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
3R | 15179039..15179124 | 22..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:23 Download gff for
BO17792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
arm_3R | 10999703..11000065 | 498..860 | 100 | <- | Minus |
arm_3R | 10998322..10998552 | 861..1091 | 99 | <- | Minus |
arm_3R | 11001906..11002015 | 388..497 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
arm_3R | 11004761..11004846 | 22..107 | 100 | | Minus |
BO17792.pep Sequence
Translation from 16 to 1129
> BO17792.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS
VFDRATSLAPFTRPSFRASSLEPLDELFERKLPAIAEADSAPADAPSRPL
GIFERAGSPSPTPVKAGRWGPRPTEVAYDAEGLPIFHPRNRFRDLLSPSP
NLPISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWS
KHPARPLTPEEEDLFASFLDH
BO17792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-PB | 365 | CG6803-PB | 1..365 | 1..365 | 1953 | 100 | Plus |
Mf-PM | 364 | CG6803-PM | 1..364 | 1..364 | 1923 | 98.9 | Plus |
Mf-PL | 364 | CG6803-PL | 1..364 | 1..364 | 1923 | 98.9 | Plus |
Mf-PJ | 313 | CG6803-PJ | 1..313 | 1..365 | 1615 | 85.8 | Plus |
Mf-PF | 313 | CG6803-PF | 1..313 | 1..365 | 1615 | 85.8 | Plus |