Clone BO17792 Report

Search the DGRC for BO17792

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptMf-RB
Protein status:BO17792.pep: validated full length
Sequenced Size:1129

Clone Sequence Records

BO17792.3prime Sequence

669 bp (601 high quality bases) assembled on 2006-10-13

> BO17792.3prime
ATGGTCTAGAAAGCTTGCGAATAAATCCTCTTCCTCAGGTGTCAAGGGTC
TAGCTGGGTGCTTGGACCACAAGTAGCGGTTCTTCACCGGCGACAAGTAC
GAATCCCGGGCTACGGGGCTCGAGGCACGGGGCACCGAGGTGGCGCGGAA
GGGCACCAGGTCATCCACGTCCCACCAGAAGGGATCGCGCACAATCGAGG
AGATCGGCAAGTTGGGGCTGGGGCTCAGCAGATCCCTGAAGCGGTTGCGT
GGGTGAAAGATGGGGAGTCCCTCAGCATCGTAGGCGACTTCGGTGGGACG
GGGTCCCCAGCGACCGGCTTTCACGGGAGTGGGACTTGGCGAACCGGCGC
GCTCAAAGATACCGAGTGGCCGACTGGGCGCATCAGCTGGCGCCGAATCA
GCCTCGGCGATCGCGGGCAACTTACGTTCAAAGAGTTCGTCCAGCGGCTC
CAGGGAGCTGGCACGGAAGCTGGGCCGCGTGAACGGGGCCAAGCTGGTGG
CACGATCGAAGACCGAGGGTCCTCCGCGTGGCACGCTGCCCTCGCGGTTC
CAGTAGCTCGGCGGTGGCACGTACGGCTCGCTGCCGGCACGGGTCGTCCT
GGCAAGGCGGAACGGCGAGGCCGAGCGACGAGCCTTGTTGAGCTCAACCA
GCAGCTTGTCCTCTGGCTC

BO17792.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6803-PB 1098 Zeelin1-RB 445..1095 669..19 3180 99.5 Minus
CG6803-PD 939 Zeelin1-RD 445..689 669..425 1175 99.1 Minus
CG6803-PD 939 Zeelin1-RD 689..921 269..37 1140 99.5 Minus
CG6803-PE 501 Zeelin1-RE 445..484 669..630 175 97.5 Minus
CG6803-PA 474 Zeelin1-RA 424..462 669..631 170 97.4 Minus
CG6803-PC 507 Zeelin1-RC 445..481 669..633 160 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RB 2110 CG6803-RB 559..1209 669..19 3210 99.5 Minus
Mf-RM 1939 CG553-RM 559..1191 669..37 3120 99.5 Minus
Mf-RL 1905 CG553-RL 525..1157 669..37 3120 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15173980..15174344 269..633 1810 99.7 Plus
3R 32079331 3R 15172600..15172831 39..270 1145 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 17:33:08 has no hits.

BO17792.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:16 Download gff for BO17792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6803-PB 445..1098 15..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:38:00 Download gff for BO17792.3prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 559..1212 15..669 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:58 Download gff for BO17792.3prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 559..1212 15..669 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:58 Download gff for BO17792.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15172083..15172106 15..38 91 <- Plus
3R 15172600..15172830 39..269 99 <- Plus
3R 15173981..15174343 270..632 99 <- Plus
3R 15176184..15176220 633..669 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:38:00 Download gff for BO17792.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10998322..10998552 39..269 99 <- Plus
arm_3R 10997805..10997828 15..38 91 <- Plus
arm_3R 10999703..11000065 270..632 99 <- Plus
arm_3R 11001906..11001942 633..669 97   Plus

BO17792.5prime Sequence

731 bp (603 high quality bases) assembled on 2006-10-13

> BO17792.5prime
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGAACCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCCGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGTAAGTTGCCCGCGATCGCCAAGGCTG

BO17792.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6803-PB 1098 Zeelin1-RB 1..715 17..731 3500 99.5 Plus
CG6803-PD 939 Zeelin1-RD 1..689 17..705 3395 99.7 Plus
CG6803-PE 501 Zeelin1-RE 1..484 17..500 2420 100 Plus
CG6803-PC 507 Zeelin1-RC 1..481 17..497 2405 100 Plus
CG6803-PA 474 Zeelin1-RA 1..301 17..317 1505 100 Plus
CG6803-PA 474 Zeelin1-RA 302..462 339..499 805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RM 1939 CG553-RM 115..829 17..731 3530 99.6 Plus
Mf-RL 1905 CG553-RL 81..795 17..731 3530 99.6 Plus
Mf-RB 2110 CG6803-RB 115..829 17..731 3530 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15174110..15174344 731..497 1130 98.7 Minus
3R 32079331 3R 15178280..15178490 317..107 1055 100 Minus
3R 32079331 3R 15176184..15176295 497..386 560 100 Minus
3R 32079331 3R 15179038..15179129 108..17 460 100 Minus
3R 32079331 3R 15176362..15176437 389..314 365 98.7 Minus
Blast to na_te.dros performed on 2015-02-10 18:12:26 has no hits.

BO17792.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:17 Download gff for BO17792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6803-PB 1..715 17..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:14:41 Download gff for BO17792.5prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 105..829 7..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:22 Download gff for BO17792.5prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 105..829 7..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:22 Download gff for BO17792.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15174110..15174343 498..731 98 <- Minus
3R 15176184..15176293 388..497 100 <- Minus
3R 15176364..15176433 318..387 100 <- Minus
3R 15178280..15178489 108..317 100 <- Minus
3R 15179039..15179139 7..107 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:14:41 Download gff for BO17792.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10999832..11000065 498..731 98 <- Minus
arm_3R 11001906..11002015 388..497 100 <- Minus
arm_3R 11002086..11002155 318..387 100 <- Minus
arm_3R 11004002..11004211 108..317 100 <- Minus
arm_3R 11004761..11004861 7..107 96   Minus

BO17792.complete Sequence

1129 bp assembled on 2006-10-11

GenBank Submission: FJ634218

> BO17792.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTC
GTCGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGC
GAGCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCC
ACGCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCA
CGCGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTT
GAACGTAAGTTGCCCGCGATCGCCGAGGCTGATTCGGCGCCAGCTGATGC
GCCCAGTCGGCCACTCGGTATCTTTGAGCGCGCCGGTTCGCCAAGTCCCA
CTCCCGTGAAAGCCGGTCGCTGGGGACCCCGTCCCACCGAAGTCGCCTAC
GATGCTGAGGGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCT
GCTGAGCCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCT
TCTGGTGGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCC
CGTGCCTCGAGCCCCGTAGCCCGGGATTCGTACTTGTCGCCGGTGAAGAA
CCGCTACTTGTGGTCCAAGCACCCAGCTAGACCCTTGACACCTGAGGAAG
AGGATTTATTCGCAAGCTTTCTAGACCAT

BO17792.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RB 1098 CG6803-PB 1..1095 17..1111 5460 99.9 Plus
Mf-RM 1095 CG6803-PM 1..1077 17..1093 5370 99.9 Plus
Mf-RL 1095 CG6803-PL 1..1077 17..1093 5370 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RB 2110 CG6803-RB 115..1209 17..1111 5460 99.9 Plus
Mf-RM 1939 CG553-RM 115..1191 17..1093 5370 99.9 Plus
Mf-RL 1905 CG553-RL 81..1157 17..1093 5370 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15173980..15174344 861..497 1825 100 Minus
3R 32079331 3R 15172600..15172831 1091..860 1145 99.6 Minus
3R 32079331 3R 15178280..15178490 317..107 1055 100 Minus
3R 32079331 3R 15176184..15176295 497..386 560 100 Minus
3R 32079331 3R 15179038..15179129 108..17 460 100 Minus
3R 32079331 3R 15176362..15176437 389..314 365 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 00:07:57 has no hits.

BO17792.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:41 Download gff for BO17792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 1..1098 17..1115 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:18 Download gff for BO17792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 105..1212 7..1115 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:23 Download gff for BO17792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 120..1209 22..1113 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:41 Download gff for BO17792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 105..1212 7..1115 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:49 Download gff for BO17792.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RB 120..1209 22..1113 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:49 Download gff for BO17792.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15176364..15176433 318..387 100 <- Minus
3R 15173981..15174343 498..860 100 <- Minus
3R 15172600..15172830 861..1091 99 <- Minus
3R 15176184..15176293 388..497 100 <- Minus
3R 15178280..15178489 108..317 100 <- Minus
3R 15179039..15179124 22..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:23 Download gff for BO17792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11002086..11002155 318..387 100 <- Minus
arm_3R 10999703..11000065 498..860 100 <- Minus
arm_3R 10998322..10998552 861..1091 99 <- Minus
arm_3R 11001906..11002015 388..497 100 <- Minus
arm_3R 11004002..11004211 108..317 100 <- Minus
arm_3R 11004761..11004846 22..107 100   Minus

BO17792.pep Sequence

Translation from 16 to 1129

> BO17792.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS
VFDRATSLAPFTRPSFRASSLEPLDELFERKLPAIAEADSAPADAPSRPL
GIFERAGSPSPTPVKAGRWGPRPTEVAYDAEGLPIFHPRNRFRDLLSPSP
NLPISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWS
KHPARPLTPEEEDLFASFLDH

BO17792.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-PB 365 CG6803-PB 1..365 1..365 1953 100 Plus
Mf-PM 364 CG6803-PM 1..364 1..364 1923 98.9 Plus
Mf-PL 364 CG6803-PL 1..364 1..364 1923 98.9 Plus
Mf-PJ 313 CG6803-PJ 1..313 1..365 1615 85.8 Plus
Mf-PF 313 CG6803-PF 1..313 1..365 1615 85.8 Plus