Clone BO17794 Report

Search the DGRC for BO17794

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:177
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptckd-RC
Protein status:BO17794.pep: validated full length
Sequenced Size:454

Clone Sequence Records

BO17794.3prime Sequence

452 bp (452 high quality bases) assembled on 2006-10-13

> BO17794.3prime
ATGGTCTAGAAAGCTTGCGTAATCCTCGTCATCTTCATCTGGCGGATCTG
TGGCATAGGTCAGTTCGTTCAGGTAGAACCATTTGGGTGACTCTGTGCAG
TTAAAGTTGTAGTCCCAATCACAGATTCTGTACTCCTGGTTAAAGCTCGT
CTCATTGGCGCACAGATGGGGAATCCGATTGCCCTCCTCGTCGCACATGT
GAAAGATCTGGCAATTGTACTCCATGTCGGCATAGAAGCCCACAGAACGC
CTCTTGCAATCGAATGAGAATGTTATATTATCTAAATTCGTCCATTCCTT
CGTCTTGTGATTTTGAAATACTGGACTGGCTGGCTCTTGGCCTTGAACCG
CAATGGCGGCCAGCAAAATAGGACCTAGTAAAACGCCGGAAAGCCATAAA
ATTCTATAACTGTAAACCATTTTTGTGGTGTTGAACATGTCGACTGATAA
CT

BO17794.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14959-PC 423 CG14959-RC 1..420 438..19 2100 100 Minus
CG14959-PA 426 CG14959-RA 1..354 438..85 1770 100 Minus
CG14959-PB 324 CG14959-RB 1..257 438..182 1285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-RE 1145 CG14959-RE 555..974 438..19 2100 100 Minus
ckd-RD 1246 CG14959-RD 317..736 438..19 2100 100 Minus
ckd-RC 1340 CG14959-RC 750..1169 438..19 2100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3267119..3267287 376..208 845 100 Minus
3L 28110227 3L 3267422..3267547 210..85 630 100 Minus
3L 28110227 3L 3266651..3266716 438..373 330 100 Minus
3L 28110227 3L 3267609..3267674 84..19 330 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:10:08 has no hits.

BO17794.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:18 Download gff for BO17794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14959-PC 1..423 16..438 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:50 Download gff for BO17794.3prime
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 739..1179 10..448 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:59 Download gff for BO17794.3prime
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 739..1179 10..448 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:59 Download gff for BO17794.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3266640..3266714 375..448 94 -> Minus
3L 3267121..3267287 208..374 100 -> Minus
3L 3267425..3267547 85..207 100 -> Minus
3L 3267609..3267684 10..84 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:50 Download gff for BO17794.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3266640..3266714 375..448 94 -> Minus
arm_3L 3267121..3267287 208..374 100 -> Minus
arm_3L 3267425..3267547 85..207 100 -> Minus
arm_3L 3267609..3267684 10..84 94   Minus

BO17794.5prime Sequence

452 bp (452 high quality bases) assembled on 2006-10-13

> BO17794.5prime
GAAGTTATCAGTCGACATGTTCAACACCACAAAAATGGTTTACAGTTATA
GAATTTTATGGCTTTCCGGCGTTTTACTAGGTCCTATTTTGCTGGCCGCC
ATTGCGGTTCAAGGCCAAGAGCCAGCCAGTCCAGTATTTCAAAATCACAA
GACGAAGGAATGGACGAATTTAGATAATATAACATTCTCATTCGATTGCA
AGAGGCGTTCTGTGGGCTTCTATGCCGACATGGAGTACAATTGCCAGATC
TTTCACATGTGCGACGAGGAGGGCAATCGGATTCCCCATCTGTGCGCCAA
TGAGACGAGCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACT
TTAACTGCACAGAGTCACCCAAATGGTTCTACCTGAACGAACTGACCTAT
GCCACAGATCCGCCAGATGAAGATGACGAGGATTACGCAAGCTTTCTAGA
CC

BO17794.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14959-PC 423 CG14959-RC 1..420 17..436 2100 100 Plus
CG14959-PA 426 CG14959-RA 1..354 17..370 1770 100 Plus
CG14959-PB 324 CG14959-RB 1..257 17..273 1285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-RE 1145 CG14959-RE 555..974 17..436 2100 100 Plus
ckd-RD 1246 CG14959-RD 317..736 17..436 2100 100 Plus
ckd-RC 1340 CG14959-RC 750..1169 17..436 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3267119..3267287 79..247 845 100 Plus
3L 28110227 3L 3267422..3267547 245..370 630 100 Plus
3L 28110227 3L 3266651..3266716 17..82 330 100 Plus
3L 28110227 3L 3267609..3267674 371..436 330 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:41:19 has no hits.

BO17794.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:19 Download gff for BO17794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14959-PC 1..423 17..439 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:03 Download gff for BO17794.5prime
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 739..1179 7..445 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:37 Download gff for BO17794.5prime
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 739..1179 7..445 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:37 Download gff for BO17794.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3267425..3267547 248..370 100 -> Plus
3L 3267609..3267684 371..445 94   Plus
3L 3266640..3266714 7..80 94 -> Plus
3L 3267121..3267287 81..247 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:03 Download gff for BO17794.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3266640..3266714 7..80 94 -> Plus
arm_3L 3267121..3267287 81..247 100 -> Plus
arm_3L 3267425..3267547 248..370 100 -> Plus
arm_3L 3267609..3267684 371..445 94   Plus

BO17794.complete Sequence

454 bp assembled on 2006-10-11

GenBank Submission: FJ634219

> BO17794.complete
GAAGTTATCAGTCGACATGTTCAACACCACAAAAATGGTTTACAGTTATA
GAATTTTATGGCTTTCCGGCGTTTTACTAGGTCCTATTTTGCTGGCCGCC
ATTGCGGTTCAAGGCCAAGAGCCAGCCAGTCCAGTATTTCAAAATCACAA
GACGAAGGAATGGACGAATTTAGATAATATAACATTCTCATTCGATTGCA
AGAGGCGTTCTGTGGGCTTCTATGCCGACATGGAGTACAATTGCCAGATC
TTTCACATGTGCGACGAGGAGGGCAATCGGATTCCCCATCTGTGCGCCAA
TGAGACGAGCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACT
TTAACTGCACAGAGTCACCCAAATGGTTCTACCTGAACGAACTGACCTAT
GCCACAGATCCGCCAGATGAAGATGACGAGGATTACGCAAGCTTTCTAGA
CCAT

BO17794.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-RE 423 CG14959-PE 1..420 17..436 2100 100 Plus
ckd-RD 423 CG14959-PD 1..420 17..436 2100 100 Plus
ckd-RC 423 CG14959-PC 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-RE 1145 CG14959-RE 555..974 17..436 2100 100 Plus
ckd-RD 1246 CG14959-RD 317..736 17..436 2100 100 Plus
ckd-RC 1340 CG14959-RC 750..1169 17..436 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3267119..3267287 79..247 845 100 Plus
3L 28110227 3L 3267422..3267547 245..370 630 100 Plus
3L 28110227 3L 3266651..3266716 17..82 330 100 Plus
3L 28110227 3L 3267609..3267674 371..436 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:45:17 has no hits.

BO17794.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:33 Download gff for BO17794.complete
Subject Subject Range Query Range Percent Splice Strand
CG14959-RC 1..423 17..439 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:10 Download gff for BO17794.complete
Subject Subject Range Query Range Percent Splice Strand
CG14959-RC 739..1179 7..445 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:56 Download gff for BO17794.complete
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 755..1169 22..438 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:34 Download gff for BO17794.complete
Subject Subject Range Query Range Percent Splice Strand
CG14959-RC 739..1179 7..445 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:22 Download gff for BO17794.complete
Subject Subject Range Query Range Percent Splice Strand
ckd-RC 755..1169 22..438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:22 Download gff for BO17794.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3266656..3266714 22..80 100 -> Plus
3L 3267121..3267287 81..247 100 -> Plus
3L 3267425..3267547 248..370 100 -> Plus
3L 3267609..3267674 371..438 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:56 Download gff for BO17794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3266656..3266714 22..80 100 -> Plus
arm_3L 3267121..3267287 81..247 100 -> Plus
arm_3L 3267425..3267547 248..370 100 -> Plus
arm_3L 3267609..3267674 371..438 97   Plus

BO17794.pep Sequence

Translation from 16 to 454

> BO17794.pep
MFNTTKMVYSYRILWLSGVLLGPILLAAIAVQGQEPASPVFQNHKTKEWT
NLDNITFSFDCKRRSVGFYADMEYNCQIFHMCDEEGNRIPHLCANETSFN
QEYRICDWDYNFNCTESPKWFYLNELTYATDPPDEDDEDYASFLDH

BO17794.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
ckd-PE 140 CG14959-PE 1..140 1..140 789 100 Plus
ckd-PD 140 CG14959-PD 1..140 1..140 789 100 Plus
ckd-PC 140 CG14959-PC 1..140 1..140 789 100 Plus
CG13675-PC 151 CG13675-PC 69..139 58..128 173 42.3 Plus
CG13675-PD 355 CG13675-PD 69..139 58..128 173 42.3 Plus