Clone Sequence Records
BO17794.3prime Sequence
452 bp (452 high quality bases) assembled on 2006-10-13
> BO17794.3prime
ATGGTCTAGAAAGCTTGCGTAATCCTCGTCATCTTCATCTGGCGGATCTG
TGGCATAGGTCAGTTCGTTCAGGTAGAACCATTTGGGTGACTCTGTGCAG
TTAAAGTTGTAGTCCCAATCACAGATTCTGTACTCCTGGTTAAAGCTCGT
CTCATTGGCGCACAGATGGGGAATCCGATTGCCCTCCTCGTCGCACATGT
GAAAGATCTGGCAATTGTACTCCATGTCGGCATAGAAGCCCACAGAACGC
CTCTTGCAATCGAATGAGAATGTTATATTATCTAAATTCGTCCATTCCTT
CGTCTTGTGATTTTGAAATACTGGACTGGCTGGCTCTTGGCCTTGAACCG
CAATGGCGGCCAGCAAAATAGGACCTAGTAAAACGCCGGAAAGCCATAAA
ATTCTATAACTGTAAACCATTTTTGTGGTGTTGAACATGTCGACTGATAA
CT
BO17794.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14959-PC | 423 | CG14959-RC | 1..420 | 438..19 | 2100 | 100 | Minus |
CG14959-PA | 426 | CG14959-RA | 1..354 | 438..85 | 1770 | 100 | Minus |
CG14959-PB | 324 | CG14959-RB | 1..257 | 438..182 | 1285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-RE | 1145 | CG14959-RE | 555..974 | 438..19 | 2100 | 100 | Minus |
ckd-RD | 1246 | CG14959-RD | 317..736 | 438..19 | 2100 | 100 | Minus |
ckd-RC | 1340 | CG14959-RC | 750..1169 | 438..19 | 2100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3267119..3267287 | 376..208 | 845 | 100 | Minus |
3L | 28110227 | 3L | 3267422..3267547 | 210..85 | 630 | 100 | Minus |
3L | 28110227 | 3L | 3266651..3266716 | 438..373 | 330 | 100 | Minus |
3L | 28110227 | 3L | 3267609..3267674 | 84..19 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:10:08 has no hits.
BO17794.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:18 Download gff for
BO17794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-PC | 1..423 | 16..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:50 Download gff for
BO17794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 739..1179 | 10..448 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:59 Download gff for
BO17794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 739..1179 | 10..448 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:59 Download gff for
BO17794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3266640..3266714 | 375..448 | 94 | -> | Minus |
3L | 3267121..3267287 | 208..374 | 100 | -> | Minus |
3L | 3267425..3267547 | 85..207 | 100 | -> | Minus |
3L | 3267609..3267684 | 10..84 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:50 Download gff for
BO17794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3266640..3266714 | 375..448 | 94 | -> | Minus |
arm_3L | 3267121..3267287 | 208..374 | 100 | -> | Minus |
arm_3L | 3267425..3267547 | 85..207 | 100 | -> | Minus |
arm_3L | 3267609..3267684 | 10..84 | 94 | | Minus |
BO17794.5prime Sequence
452 bp (452 high quality bases) assembled on 2006-10-13
> BO17794.5prime
GAAGTTATCAGTCGACATGTTCAACACCACAAAAATGGTTTACAGTTATA
GAATTTTATGGCTTTCCGGCGTTTTACTAGGTCCTATTTTGCTGGCCGCC
ATTGCGGTTCAAGGCCAAGAGCCAGCCAGTCCAGTATTTCAAAATCACAA
GACGAAGGAATGGACGAATTTAGATAATATAACATTCTCATTCGATTGCA
AGAGGCGTTCTGTGGGCTTCTATGCCGACATGGAGTACAATTGCCAGATC
TTTCACATGTGCGACGAGGAGGGCAATCGGATTCCCCATCTGTGCGCCAA
TGAGACGAGCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACT
TTAACTGCACAGAGTCACCCAAATGGTTCTACCTGAACGAACTGACCTAT
GCCACAGATCCGCCAGATGAAGATGACGAGGATTACGCAAGCTTTCTAGA
CC
BO17794.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14959-PC | 423 | CG14959-RC | 1..420 | 17..436 | 2100 | 100 | Plus |
CG14959-PA | 426 | CG14959-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
CG14959-PB | 324 | CG14959-RB | 1..257 | 17..273 | 1285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-RE | 1145 | CG14959-RE | 555..974 | 17..436 | 2100 | 100 | Plus |
ckd-RD | 1246 | CG14959-RD | 317..736 | 17..436 | 2100 | 100 | Plus |
ckd-RC | 1340 | CG14959-RC | 750..1169 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3267119..3267287 | 79..247 | 845 | 100 | Plus |
3L | 28110227 | 3L | 3267422..3267547 | 245..370 | 630 | 100 | Plus |
3L | 28110227 | 3L | 3266651..3266716 | 17..82 | 330 | 100 | Plus |
3L | 28110227 | 3L | 3267609..3267674 | 371..436 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:41:19 has no hits.
BO17794.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:19 Download gff for
BO17794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-PC | 1..423 | 17..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:03 Download gff for
BO17794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 739..1179 | 7..445 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:37 Download gff for
BO17794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 739..1179 | 7..445 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:37 Download gff for
BO17794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3267425..3267547 | 248..370 | 100 | -> | Plus |
3L | 3267609..3267684 | 371..445 | 94 | | Plus |
3L | 3266640..3266714 | 7..80 | 94 | -> | Plus |
3L | 3267121..3267287 | 81..247 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:03 Download gff for
BO17794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3266640..3266714 | 7..80 | 94 | -> | Plus |
arm_3L | 3267121..3267287 | 81..247 | 100 | -> | Plus |
arm_3L | 3267425..3267547 | 248..370 | 100 | -> | Plus |
arm_3L | 3267609..3267684 | 371..445 | 94 | | Plus |
BO17794.complete Sequence
454 bp assembled on 2006-10-11
GenBank Submission: FJ634219
> BO17794.complete
GAAGTTATCAGTCGACATGTTCAACACCACAAAAATGGTTTACAGTTATA
GAATTTTATGGCTTTCCGGCGTTTTACTAGGTCCTATTTTGCTGGCCGCC
ATTGCGGTTCAAGGCCAAGAGCCAGCCAGTCCAGTATTTCAAAATCACAA
GACGAAGGAATGGACGAATTTAGATAATATAACATTCTCATTCGATTGCA
AGAGGCGTTCTGTGGGCTTCTATGCCGACATGGAGTACAATTGCCAGATC
TTTCACATGTGCGACGAGGAGGGCAATCGGATTCCCCATCTGTGCGCCAA
TGAGACGAGCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACT
TTAACTGCACAGAGTCACCCAAATGGTTCTACCTGAACGAACTGACCTAT
GCCACAGATCCGCCAGATGAAGATGACGAGGATTACGCAAGCTTTCTAGA
CCAT
BO17794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-RE | 423 | CG14959-PE | 1..420 | 17..436 | 2100 | 100 | Plus |
ckd-RD | 423 | CG14959-PD | 1..420 | 17..436 | 2100 | 100 | Plus |
ckd-RC | 423 | CG14959-PC | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-RE | 1145 | CG14959-RE | 555..974 | 17..436 | 2100 | 100 | Plus |
ckd-RD | 1246 | CG14959-RD | 317..736 | 17..436 | 2100 | 100 | Plus |
ckd-RC | 1340 | CG14959-RC | 750..1169 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3267119..3267287 | 79..247 | 845 | 100 | Plus |
3L | 28110227 | 3L | 3267422..3267547 | 245..370 | 630 | 100 | Plus |
3L | 28110227 | 3L | 3266651..3266716 | 17..82 | 330 | 100 | Plus |
3L | 28110227 | 3L | 3267609..3267674 | 371..436 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:45:17 has no hits.
BO17794.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:33 Download gff for
BO17794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-RC | 1..423 | 17..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:10 Download gff for
BO17794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-RC | 739..1179 | 7..445 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:56 Download gff for
BO17794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 755..1169 | 22..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:34 Download gff for
BO17794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14959-RC | 739..1179 | 7..445 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:22 Download gff for
BO17794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ckd-RC | 755..1169 | 22..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:22 Download gff for
BO17794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3266656..3266714 | 22..80 | 100 | -> | Plus |
3L | 3267121..3267287 | 81..247 | 100 | -> | Plus |
3L | 3267425..3267547 | 248..370 | 100 | -> | Plus |
3L | 3267609..3267674 | 371..438 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:56 Download gff for
BO17794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3266656..3266714 | 22..80 | 100 | -> | Plus |
arm_3L | 3267121..3267287 | 81..247 | 100 | -> | Plus |
arm_3L | 3267425..3267547 | 248..370 | 100 | -> | Plus |
arm_3L | 3267609..3267674 | 371..438 | 97 | | Plus |
BO17794.pep Sequence
Translation from 16 to 454
> BO17794.pep
MFNTTKMVYSYRILWLSGVLLGPILLAAIAVQGQEPASPVFQNHKTKEWT
NLDNITFSFDCKRRSVGFYADMEYNCQIFHMCDEEGNRIPHLCANETSFN
QEYRICDWDYNFNCTESPKWFYLNELTYATDPPDEDDEDYASFLDH
BO17794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ckd-PE | 140 | CG14959-PE | 1..140 | 1..140 | 789 | 100 | Plus |
ckd-PD | 140 | CG14959-PD | 1..140 | 1..140 | 789 | 100 | Plus |
ckd-PC | 140 | CG14959-PC | 1..140 | 1..140 | 789 | 100 | Plus |
CG13675-PC | 151 | CG13675-PC | 69..139 | 58..128 | 173 | 42.3 | Plus |
CG13675-PD | 355 | CG13675-PD | 69..139 | 58..128 | 173 | 42.3 | Plus |