Clone BO17801 Report

Search the DGRC for BO17801

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG6686-RA
Protein status:BO17801.pep: validated full length
Sequenced Size:2944

Clone Sequence Records

BO17801.3prime Sequence

702 bp (635 high quality bases) assembled on 2006-10-13

> BO17801.3prime
ATGGTCTAGAAAGCTTGCCTCAAATTTGGCTATTGCGGAGCCACTGACAC
CTGGTACATTTTTGTTGTTGCCACTGAGCACCACGTAAGCGGTCTTCGTC
TCCTTTTGCTTCTGCTGCAACATGGTCAGTGTGCCCAAGGGTGTGTCTGT
CGAACTCATGGTTTTCATTAGCCCATCCTGCTCCATTTTCTTGAGACGCT
TCTCAATCTTATTCTTGCCGGGCCCCTTGCCATGGAACTTATGTGACAAG
TAGCGGAAAGCCTCTTTGAGGTTCAATATGCGGCCATTGTCATCGATATA
ATCCAACTTGACATTGGGCTTGAAGGTCTCCTTGTCCTTAAAGTCTGTAA
TCGGTCCAAAGTGGAAGCGATCGCGACGGCCAACCTTCTCGTCCTCACCA
GCCGCTTTATCCTCAATGGAATAGTTCTTGGCCTGCAGATGGGCCATTTT
TGTGTTGCTAGGTCTGTTCTTTTCCTCCTTTTCAAGGTAACCCTTGGACA
GCGCCAATCGCAGAGCATTCGCTACACCAGCTCCCACATCGGGCTCCTCG
TCTAGAATGGCACGATCTTCCAGGTCTTCACCCAGATTATCCAAATCGGC
GGGCTGCATGACTTCATCGGGATTGACCGAATTCCAGGTGCCGTGACTCA
GGGCAGGCTCATCGGTATGTGTTTCCATATGCTCCTCCGGCTGTTCGGTC
TT

BO17801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-PA 2913 CG6686-RA 2227..2907 702..22 3405 100 Minus
CG6686-PB 2895 CG6686-RB 2209..2889 702..22 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RC 3192 CG6686-RC 2326..3006 702..22 3405 100 Minus
CG6686-RB 3169 CG6686-RB 2303..2983 702..22 3405 100 Minus
CG6686-RA 3187 CG6686-RA 2321..3001 702..22 3405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11985007..11985311 398..702 1525 100 Plus
2L 23513712 2L 11984725..11984951 172..398 1135 100 Plus
2L 23513712 2L 11984513..11984663 22..172 755 100 Plus
Blast to na_te.dros performed 2015-02-12 06:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 225..271 139..93 109 70.2 Minus

BO17801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:19 Download gff for BO17801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-PB 2209..2895 18..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:11:26 Download gff for BO17801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 2321..3004 19..702 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:20 Download gff for BO17801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 2321..3004 19..702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:20 Download gff for BO17801.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11984511..11984662 19..171 98 <- Plus
2L 11984725..11984950 172..397 100 <- Plus
2L 11985007..11985311 398..702 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:11:26 Download gff for BO17801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11984511..11984662 19..171 98 <- Plus
arm_2L 11984725..11984950 172..397 100 <- Plus
arm_2L 11985007..11985311 398..702 100   Plus

BO17801.5prime Sequence

718 bp (708 high quality bases) assembled on 2006-10-13

> BO17801.5prime
GAAGTTATCAGTCGACATGGGTTCCTCGTCGTCGGGAAAGAAACACAAGA
AGGACAAGAAGAACCGTCATCGCTCGCGATCGTCGGAGCGACCGCGGCGC
GTCACAGAGGACGAGGATGTCACACTGGATCTCACCGACGACTCCTCGTC
GCGGCACAGACACCACAAGCACAAGAAGCACAAGGAGCACCGCCACAAGC
ACCACAAGCAAAAGGAGCGCGAGCGCGCGAACGAGGTCATCTCCCTAGAG
GAATCGGACTCGGATAGTTTCTCCTTTTTTTCAGGTTCCGACTGCGTGGA
GGTGCCGGTACAGGCGCAGGTGCAGGCGCAGGCCAAGTTGAGGGACGCCA
GAGAATCGTCCAATCGTGACAAGGAGCGGGATTCTGGACGCGATCGTGAA
CTCCTAAGAGAAAGGGAGCGAGAACGAGATCGTGAGCGGGAGAGGGATCG
GGATCGGGAAAAGGAGCGCGAACGGGAGCGTGAGAAGGAGCGTCTCAGGG
AGCGGGAGGAGCGCGAGAGAGAGCGTGAGAAGGAACGTATCAGAGAACGC
GAGAAAGAACGCCTTAGGGAGCGCGAGAGGGAGCGGGAACGCGAACGTGT
ACGGGAGCTCACAGCTCCTCCACCACCCCAAATCTCCAAGCATGCCGAAT
ATGAGTCTAGGCGAGAGCGTGAGATCGAACGGGAACGGGACGCCCGCAAG
CGATCTGGCAGAGAACGT

BO17801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-PA 2913 CG6686-RA 1..702 17..718 3510 100 Plus
CG6686-PB 2895 CG6686-RB 251..684 285..718 2170 100 Plus
CG6686-PB 2895 CG6686-RB 1..253 17..269 1265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RA 3187 CG6686-RA 95..796 17..718 3510 100 Plus
CG6686-RC 3192 CG6686-RC 95..801 17..718 3340 98.4 Plus
CG6686-RB 3169 CG6686-RB 95..778 17..718 3230 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11986954..11987394 718..278 2190 99.8 Minus
2L 23513712 2L 11987694..11987945 268..17 1260 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:51:31 has no hits.

BO17801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:20 Download gff for BO17801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:31 Download gff for BO17801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 95..796 17..718 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:00 Download gff for BO17801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 95..796 17..718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:00 Download gff for BO17801.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11987696..11987945 17..266 100   Minus
2L 11986954..11987387 285..718 100 <- Minus
2L 11987495..11987512 267..284 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:31 Download gff for BO17801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11986954..11987387 285..718 100 <- Minus
arm_2L 11987495..11987512 267..284 100 <- Minus
arm_2L 11987696..11987945 17..266 100   Minus

BO17801.complete Sequence

2944 bp assembled on 2007-11-30

GenBank Submission: FJ634220

> BO17801.complete
GAAGTTATCAGTCGACATGGGTTCCTCGTCGTCGGGAAAGAAACACAAGA
AGGACAAGAAGAACCGTCATCGCTCGCGATCGTCGGAGCGACCGCGGCGC
GTCACAGAGGACGAGGATGTCACACTGGATCTCACCGACGACTCCTCGTC
GCGGCACAGACACCACAAGCACAAGAAGCACAAGGAGCACCGCCACAAGC
ACCACAAGCAAAAGGAGCGCGAGCGCGCGAACGAGGTCATCTCCCTAGAG
GAATCGGACTCGGATAGTTTCTCCTTTTTTTCAGGTTCCGACTGCGTGGA
GGTGCCGGTACAGGCGCAGGTGCAGGCGCAGGCCAAGTTGAGGGACGCCA
GAGAATCGTCCAATCGTGACAAGGAGCGGGATTCTGGACGCGATCGTGAA
CTCCTAAGAGAAAGGGAGCGAGAACGAGATCGTGAGCGGGAGAGGGATCG
GGATCGGGAAAAGGAGCGCGAACGGGAGCGTGAGAAGGAGCGTCTCAGGG
AGCGGGAGGAGCGCGAGAGAGAGCGTGAGAAGGAACGTATCAGAGAACGC
GAGAAAGAACGCCTTAGGGAGCGCGAGAGGGAGCGGGAACGCGAACGTGT
ACGGGAGCTCACAGCTCCTCCACCACCCCAAATCTCCAAGCATGCCGAAT
ATGAGTCTAGGCGAGAGCGTGAGATCGAACGGGAACGGGACGCCCGCAAG
CGATCTGGCAGAGAACGTGAAAGGGAACGTAATAGGGAACGGTCCCGATC
CCAGTCGCCAGCATCGTCGTCGCGTAAACCAGCCACTAAGGAACGCGAAC
CATCGTCTCGTTCCTTCTCGCCAATACCAGAAAACGGAGCCGGCGATGTC
CTGTCCATTACGGAGACGAACAAACTTCGCGCCAAGCTGGGTCTGAAGCC
ACTCGAAGTTGATAGTGGTCCCAGCAAGGCAGGCCCTCCGCCTGGAAGCA
GTAGTCAAGGCGAGATCAAAAAACCCCATGGCGAGGCCGATCTCTCCTCG
TACAAGGATGAGTGGGGCGAGTTCTTGCACAAGCCGGCCGACAATCTAAA
GGAGAAAAGGGAGGCAGAGAAGCTGCGCGAGAAACTCAAACAGCGCAAGG
AGAAACGATTCTTAGAGGAGCGCCTGGCTCGCATCAAAACACTGGGAGAG
TCTGATGAGGAAACTGACAATGTGTCCAAGTGGGTGGACAAGAACAAGCG
GGTTGTCAACGAACGCGAGGAGGCGATGCGTAAGGCCAAAGAGTTGGAGG
AACTGGATGAGGCCTTTGGTGTTTCGGAGATTCTCGAGCAAGAGAAAACC
AAAGCTCGTCAGCGAGCATATGGCGATAGCAATCTAAAGGGCCTGCGTGT
GGATCATGATATGGATGATTTCGGCGAAGGACGCACTGTTATTCTAACTC
TTAAGGATCAAGATGTGCTTAACGAGGAGGAAGGCGACACTCTAGTCAAT
GTTAACATGGTCGACGAAGAGCGCTATAAGAAGAATGTGGCCAACAAGAA
GCAGAATCCGCTCAGTTATGGTTATAACGTATACGAGGAGCAGTACGATG
AATTGGGCAATCCCATCGAACGTTCAGTGCTGGAGAAGTACGATGATGAA
ATGGAAGGTCAGCCGAAAAAGCGCAAGAACTTTGTGATTGGTGAGAATAT
GGATGAGGAGCGGGAGCACAGACGCAAGCTCCTGGAGATTAAGACCAAAT
TAGCCGGCAAGCGTTTGGAAACCTTGGAGGACACCAATCTGCAGCTAGCA
TCGGACACTTACAGTGCAGAAGAGTTGGCCAAATTTAAAAAGCCAAAGAA
AAAGGTTAAGAAACTTCGGCAGAAACTTAAAGCCGAGGATCTTGCGCCTT
TGGCGATGGGCGAAGCATCAGGTTCTTCAGACTTTGGTAGTCGAGGTGGA
CGTTATCGTGATCACGAAGATGCGGAAATGGAAGAGTTTAAACCCCAAAT
AAAAGTGGAAGTAGAGGATGATGATTTGGAACGTGTACTTGCCAAGGCTC
GCAAACTAAAACAAAAGGAGAATATCATCAAGAAGCCTTTGCCCGTCGAC
TTCGAAAGTATACAGCGGGAGATAAAACCCGAACATGTGGAGGACACCGC
ATCAGGTGTGGTCCTTACCGGCGTCGATGGCAACATTGTCTTGAACGCCA
CAGCTGAGTTTTGCCGCACTCTGGGTGACATTCCCACGTACGGTATGGCG
GGCAACCGTAATGAGGACTCCAATGACATGATGGACTTTGACAAGACCGA
ACAGCCGGAGGAGCATATGGAAACACATACCGATGAGCCTGCCCTGAGTC
ACGGCACCTGGAATTCGGTCAATCCCGATGAAGTCATGCAGCCCGCCGAT
TTGGATAATCTGGGTGAAGACCTGGAAGATCGTGCCATTCTAGACGAGGA
GCCCGATGTGGGAGCTGGTGTAGCGAATGCTCTGCGATTGGCGCTGTCCA
AGGGTTACCTTGAAAAGGAGGAAAAGAACAGACCTAGCAACACAAAAATG
GCCCATCTGCAGGCCAAGAACTATTCCATTGAGGATAAAGCGGCTGGTGA
GGACGAGAAGGTTGGCCGTCGCGATCGCTTCCACTTTGGACCGATTACAG
ACTTTAAGGACAAGGAGACCTTCAAGCCCAATGTCAAGTTGGATTATATC
GATGACAATGGCCGCATATTGAACCTCAAAGAGGCTTTCCGCTACTTGTC
ACATAAGTTCCATGGCAAGGGGCCCGGCAAGAATAAGATTGAGAAGCGTC
TCAAGAAAATGGAGCAGGATGGGCTAATGAAAACCATGAGTTCGACAGAC
ACACCCTTGGGCACACTGACCATGTTGCAGCAGAAGCAAAAGGAGACGAA
GACCGCTTACGTGGTGCTCAGTGGCAACAACAAAAATGTACCAGGTGTCA
GTGGCTCCGCAATAGCCAAATTTAAGGCAAGCTTTCTAGACCAT

BO17801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RA 2913 CG6686-PA 1..2910 17..2926 14550 100 Plus
CG6686-RB 2895 CG6686-PB 1..2892 17..2926 14245 99.4 Plus
CG6686-RC 330 CG6686-PC 1..330 17..341 1400 96.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RA 3187 CG6686-RA 95..3004 17..2926 14550 100 Plus
CG6686-RC 3192 CG6686-RC 95..3009 17..2926 14325 99.6 Plus
CG6686-RB 3169 CG6686-RB 95..2986 17..2926 14245 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11986437..11987394 1235..278 4775 99.9 Minus
2L 23513712 2L 11985007..11985775 2547..1779 3830 99.9 Minus
2L 23513712 2L 11985833..11986382 1782..1233 2750 100 Minus
2L 23513712 2L 11987694..11987945 268..17 1260 100 Minus
2L 23513712 2L 11984725..11984951 2773..2547 1135 100 Minus
2L 23513712 2L 11984510..11984663 2926..2773 770 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:53:39 has no hits.

BO17801.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:37 Download gff for BO17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 1..2913 17..2927 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:24 Download gff for BO17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 91..3000 17..2926 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:38 Download gff for BO17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 95..3004 17..2928 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:11 Download gff for BO17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 91..3000 17..2928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:26 Download gff for BO17801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 95..3004 17..2928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:26 Download gff for BO17801.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11987696..11987945 17..266 100   Minus
2L 11984508..11984662 2774..2928 98 <- Minus
2L 11984725..11984950 2548..2773 100 <- Minus
2L 11985007..11985771 1783..2547 100 <- Minus
2L 11985833..11986380 1235..1782 100 <- Minus
2L 11986438..11987387 285..1234 100 <- Minus
2L 11987495..11987512 267..284 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:38 Download gff for BO17801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11984508..11984662 2774..2928 98 <- Minus
arm_2L 11984725..11984950 2548..2773 100 <- Minus
arm_2L 11985007..11985771 1783..2547 100 <- Minus
arm_2L 11985833..11986380 1235..1782 100 <- Minus
arm_2L 11986438..11987387 285..1234 100 <- Minus
arm_2L 11987495..11987512 267..284 100 <- Minus
arm_2L 11987696..11987945 17..266 100   Minus

BO17801.pep Sequence

Translation from 16 to 2944

> BO17801.pep
MGSSSSGKKHKKDKKNRHRSRSSERPRRVTEDEDVTLDLTDDSSSRHRHH
KHKKHKEHRHKHHKQKERERANEVISLEESDSDSFSFFSGSDCVEVPVQA
QVQAQAKLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKE
REREREKERLREREEREREREKERIREREKERLRERERERERERVRELTA
PPPPQISKHAEYESRREREIERERDARKRSGRERERERNRERSRSQSPAS
SSRKPATKEREPSSRSFSPIPENGAGDVLSITETNKLRAKLGLKPLEVDS
GPSKAGPPPGSSSQGEIKKPHGEADLSSYKDEWGEFLHKPADNLKEKREA
EKLREKLKQRKEKRFLEERLARIKTLGESDEETDNVSKWVDKNKRVVNER
EEAMRKAKELEELDEAFGVSEILEQEKTKARQRAYGDSNLKGLRVDHDMD
DFGEGRTVILTLKDQDVLNEEEGDTLVNVNMVDEERYKKNVANKKQNPLS
YGYNVYEEQYDELGNPIERSVLEKYDDEMEGQPKKRKNFVIGENMDEERE
HRRKLLEIKTKLAGKRLETLEDTNLQLASDTYSAEELAKFKKPKKKVKKL
RQKLKAEDLAPLAMGEASGSSDFGSRGGRYRDHEDAEMEEFKPQIKVEVE
DDDLERVLAKARKLKQKENIIKKPLPVDFESIQREIKPEHVEDTASGVVL
TGVDGNIVLNATAEFCRTLGDIPTYGMAGNRNEDSNDMMDFDKTEQPEEH
METHTDEPALSHGTWNSVNPDEVMQPADLDNLGEDLEDRAILDEEPDVGA
GVANALRLALSKGYLEKEEKNRPSNTKMAHLQAKNYSIEDKAAGEDEKVG
RRDRFHFGPITDFKDKETFKPNVKLDYIDDNGRILNLKEAFRYLSHKFHG
KGPGKNKIEKRLKKMEQDGLMKTMSSTDTPLGTLTMLQQKQKETKTAYVV
LSGNNKNVPGVSGSAIAKFKASFLDH

BO17801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-PA 970 CG6686-PA 1..970 1..970 4990 100 Plus
CG6686-PB 964 CG6686-PB 1..964 1..970 4941 99.4 Plus
CG6686-PC 109 CG6686-PC 1..84 1..84 445 100 Plus
CG2839-PA 826 CG2839-PA 313..816 8..521 322 24.1 Plus
CG2839-PA 826 CG2839-PA 289..794 4..605 301 22.7 Plus
CG7971-PG 1062 CG7971-PG 249..625 8..434 295 26 Plus
CG2839-PA 826 CG2839-PA 264..755 111..673 294 21.5 Plus
CG2839-PA 826 CG2839-PA 266..749 105..603 292 24.4 Plus