Clone BO17804 Report

Search the DGRC for BO17804

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptPsn-RA
Protein status:BO17804.pep: Imported from assembly
Sequenced Size:1657

Clone Sequence Records

BO17804.3prime Sequence

632 bp (551 high quality bases) assembled on 2006-10-13

> BO17804.3prime
ATGGTCTAGAAAGCTTGCTCCTTCACCTGCTTGGCCGATAGATCCTCCAT
GAACGGCTTGACCACCGCACTAGTGGCGAAGCAAAATATCAATCCCAACG
TGATTGAGATGGGCAGGGCGGGTAGCGCCTTGCGCCAAATGGCCAGAAGC
AGAAGAGTGAGGCAGAGTCCAATGAGGATGGCCACAAAGCAAGCGATTGT
GGTCGTCCAGTCGCCGTAGCTGGAGGCCTTGCCCACTAATACCGAGTAGA
AGATGAAGTCGCCGAGGCCAAGCTTTATGCCACGTTCTTCTTGCCCATCC
GGATGATTCTGATCCGGAGCTGTTACTGTCCTATACTCGTTGGAGCGCTG
AGCGTTTCCACTCTGAGTACTTTGAACTTCAATCTGGCGACGAGCCACAC
GTTCGCTCAAGTTAGCTGACCACTCTTGCGTGAAACCCGCAGCCTCAGCG
TTTCCGCGCAAATTGCTTTTAAAAGTCACAAGTGGCATACCTTCAGTTGC
CAGTACACTGCCGTCATCCCGCTGATTCTGTCGAGGATGGGAGTTACCTG
TGCGTTGGCCACTAGCCGCTGCTGCCTCTGGCGAAGCCAGCGAGTTCTGC
GTGGCCCTCGTGGTTGTGGTGGAATTGCTGGA

BO17804.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18803-PA 1626 Psn-RA 1009..1617 632..24 2970 99.5 Minus
CG18803-PB 1584 Psn-RB 1150..1575 449..24 2080 99.5 Minus
CG18803-PB 1584 Psn-RB 1009..1150 632..491 685 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-RE 1891 CG18803-RE 1167..1775 632..24 3000 99.5 Minus
Psn-RA 2048 CG18803-RA 1324..1932 632..24 3000 99.5 Minus
Psn-RD 1879 CG18803-RD 1338..1763 449..24 2100 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20434781..20435040 283..24 1270 99.2 Minus
3L 28110227 3L 20434161..20434344 632..449 905 99.5 Minus
3L 28110227 3L 20434547..20434714 449..282 840 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:38:52 has no hits.

BO17804.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:24 Download gff for BO17804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18803-PA 1010..1617 24..631 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:57 Download gff for BO17804.3prime
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1325..1932 24..631 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:38 Download gff for BO17804.3prime
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1325..1932 24..631 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:38 Download gff for BO17804.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20434162..20434344 449..631 99 -> Minus
3L 20434548..20434712 284..448 100 -> Minus
3L 20434781..20435040 24..283 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:57 Download gff for BO17804.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20427262..20427444 449..631 99 -> Minus
arm_3L 20427648..20427812 284..448 100 -> Minus
arm_3L 20427881..20428140 24..283 99   Minus

BO17804.5prime Sequence

627 bp (625 high quality bases) assembled on 2006-10-13

> BO17804.5prime
GAAGTTATCAGTCGACATGGCTGCTGTCAATCTCCAGGCTTCGTGCTCCT
CCGGGCTCGCCTCTGAGGATGACGCCAATGTGGGCAGCCAGATAGGCGCG
GCGGAGCGTTTGGAACGACCTCCAAGGCGGCAACAGCAGCGGAACAACTA
CGGCTCCAGCAATCAGGATCAACCGGATGCTGCCATACTTGCTGTGCCCA
ATGTGGTGATGCGTGAACCTTGTGGCTCGCGCCCTTCAAGACTGACCGGT
GGAGGAGGCGGCAGTGGTGGTCCGCCCACAAATGAAATGGAGGAAGAGCA
GGGCCTGAAATACGGGGCCCAGCATGTGATCAAGTTATTCGTCCCCGTCT
CCCTTTGCATGCTGGTAGTGGTGGCTACCATCAACTCCATCAGCTTCTAC
AACAGCACGGATGTCTATCTCCTCTACACACCTTTCCATGAACAATCGCC
CGAGCCTAGTGTTAAGTTCTGGAGTGCCTTGGCGAACTCCCTGATCCTGA
TGAGCGTGGTGGTGGTGATGACCTTTTTGCTGATTGTTTTGTACAAGAAG
CGTTGCTATCGCATCATTCACGGGTGGCTGATTCTCTCCTCCTTCATGTT
GTTGTTCATTTTTACGTACTTATATTT

BO17804.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18803-PA 1626 Psn-RA 1..611 17..627 3030 99.8 Plus
CG18803-PB 1584 Psn-RB 1..611 17..627 3030 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-RE 1891 CG18803-RE 159..769 17..627 3040 99.8 Plus
Psn-RD 1879 CG18803-RD 189..799 17..627 3040 99.8 Plus
Psn-RC 1778 CG18803-RC 145..755 17..627 3040 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20433072..20433310 182..420 1195 100 Plus
3L 28110227 3L 20433378..20433584 421..627 1020 99.5 Plus
3L 28110227 3L 20432842..20433007 17..182 830 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:39:04 has no hits.

BO17804.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:26 Download gff for BO17804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18803-PB 1..611 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:59 Download gff for BO17804.5prime
Subject Subject Range Query Range Percent Splice Strand
Psn-RC 140..755 9..627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:41 Download gff for BO17804.5prime
Subject Subject Range Query Range Percent Splice Strand
Psn-RC 140..755 9..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:41 Download gff for BO17804.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20432837..20433006 9..181 97 -> Plus
3L 20433072..20433310 182..420 100 -> Plus
3L 20433378..20433584 421..627 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:59 Download gff for BO17804.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20425937..20426106 9..181 97 -> Plus
arm_3L 20426172..20426410 182..420 100 -> Plus
arm_3L 20426478..20426684 421..627 99   Plus

BO17804.complete Sequence

1657 bp assembled on 2008-08-14

GenBank Submission: FJ634221

> BO17804.complete
GAAGTTATCAGTCGACATGGCTGCTGTCAATCTCCAGGCTTCGTGCTCCT
CCGGGCTCGCCTCTGAGGATGACGCCAATGTGGGCAGCCAGATAGGCGCG
GCGGAGCGTTTGGAACGACCTCCAAGGCGGCAACAGCAGCGGAACAACTA
CGGCTCCAGCAATCAGGATCAACCGGATGCTGCCATACTTGCTGTGCCCA
ATGTGGTGATGCGTGAACCTTGTGGCTCGCGCCCTTCAAGACTGACCGGT
GGAGGAGGCGGCAGTGGTGGTCCGCCCACAAATGAAATGGAGGAAGAGCA
GGGCCTGAAATACGGGGCCCAGCATGTGATCAAGTTATTCGTCCCCGTCT
CCCTTTGCATGCTGGTAGTGGTGGCTACCATCAACTCCATCAGCTTCTAC
AACAGCACGGATGTCTATCTCCTCTACACACCTTTCCATGAACAATCGCC
CGAGCCTAGTGTTAAGTTCTGGAGTGCCTTGGCGAACTCCCTGATCCTGA
TGAGCGTGGTGGTGGTGATGACCTTTTTGCTGATTGTTTTGTACAAGAAG
CGTTGCTATCGCATCATTCACGGCTGGCTGATTCTCTCCTCCTTCATGTT
GTTGTTCATTTTTACGTACTTATATTTGGAAGAGCTTCTTCGCGCCTATA
ACATACCGATGGACTACCCTACTGCACTACTGATTATGTGGAACTTTGGA
GTGGTCGGAATGATGTCCATCCATTGGCAGGGACCTCTGCGGTTGCAGCA
AGGATATCTCATTTTCGTGGCAGCCTTGATGGCCTTGGTGTTCATTAAAT
ACCTGCCTGAATGGACTGCCTGGGCTGTATTGGCTGCCATTTCTATTTGG
GATCTTATTGCTGTCCTTTCGCCAAGAGGACCCCTCCGCATTCTGGTGGA
AACGGCTCAGGAGCGAAATGAGCAAATCTTCCCCGCTCTGATTTATTCAT
CCACTGTCGTTTACGCACTTGTAAACACTGTTACGCCGCAGCAATCGCAG
GCCACAGCTTCCTCCTCGCCGTCGTCCAGCAACTCCACCACAACCACGAG
GGCCACGCAGAACTCGCTGGCTTCGCCAGAGGCAGCAGCGGCTAGTGGCC
AACGCACAGGTAACTCCCATCCTCGACAGAATCAGCGGGATGACGGCAGT
GTACTGGCAACTGAAGGTATGCCACTTGTGACTTTTAAAAGCAATTTGCG
CGGAAACGCTGAGGCTGCGGGTTTCACGCAAGAGTGGTCAGCTAACTTGA
GCGAACGTGTGGCTCGTCGCCAGATTGAAGTTCAAAGTACTCAGAGTGGA
AACGCTCAGCGCTCCAACGAGTATAGGACAGTAACAGCTCCGGATCAGAA
TCATCCGGATGGGCAAGAAGAACGTGGCATAAAGCTTGGCCTCGGCGACT
TCATCTTCTACTCGGTATTAGTGGGCAAGGCCTCCAGCTACGGCGACTGG
ACGACCACAATCGCTTGCTTTGTGGCCATCCTCATTGGACTCTGCCTCAC
TCTTCTGCTTCTGGCCATTTGGCGCAAGGCGCTACCCGCCCTGCCCATCT
CAATAACGTTCGGATTGATATTTTGCTTCGCCACTAGTGCGGTGGTCAAG
CCGTTCATGGAGGATCTATCGGCCAAGCAGGTGTTTATAGCAAGCTTTCT
AGACCAT

BO17804.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-RE 1626 CG18803-PE 1..1623 17..1639 8115 100 Plus
Psn-RA 1626 CG18803-PA 1..1623 17..1639 8115 100 Plus
Psn-RD 1584 CG18803-PD 1..1150 17..1166 5750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-RE 1891 CG18803-RE 159..1781 17..1639 8115 100 Plus
Psn-RA 2048 CG18803-RA 316..1938 17..1639 8115 100 Plus
Psn-RD 1879 CG18803-RD 189..1338 17..1166 5750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20434781..20435046 1374..1639 1330 100 Plus
3L 28110227 3L 20434082..20434344 946..1208 1300 99.6 Plus
3L 28110227 3L 20433072..20433310 182..420 1195 100 Plus
3L 28110227 3L 20433641..20433861 631..851 1105 100 Plus
3L 28110227 3L 20433378..20433587 421..630 1050 100 Plus
3L 28110227 3L 20434547..20434714 1208..1375 840 100 Plus
3L 28110227 3L 20432842..20433007 17..182 830 100 Plus
3L 28110227 3L 20433933..20434032 851..950 500 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:12:11 has no hits.

BO17804.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:08 Download gff for BO17804.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 311..1945 9..1647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:10 Download gff for BO17804.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 316..1938 17..1641 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:01 Download gff for BO17804.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 316..1938 17..1641 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:10 Download gff for BO17804.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 316..1938 17..1641 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:10 Download gff for BO17804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20434781..20435046 1374..1641 99   Plus
3L 20434548..20434712 1209..1373 100 -> Plus
3L 20434087..20434344 951..1208 100 -> Plus
3L 20432842..20433006 17..181 100 -> Plus
3L 20433072..20433310 182..420 100 -> Plus
3L 20433378..20433587 421..630 100 -> Plus
3L 20433641..20433861 631..851 100 -> Plus
3L 20433934..20434032 852..950 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:10 Download gff for BO17804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20426478..20426687 421..630 100 -> Plus
arm_3L 20426741..20426961 631..851 100 -> Plus
arm_3L 20425942..20426106 17..181 100 -> Plus
arm_3L 20426172..20426410 182..420 100 -> Plus
arm_3L 20427034..20427132 852..950 100 -> Plus
arm_3L 20427187..20427444 951..1208 100 -> Plus
arm_3L 20427648..20427812 1209..1373 100 -> Plus
arm_3L 20427881..20428146 1374..1641 99   Plus

BO17804.pep Sequence

Translation from 16 to 1657

> BO17804.pep
MAAVNLQASCSSGLASEDDANVGSQIGAAERLERPPRRQQQRNNYGSSNQ
DQPDAAILAVPNVVMREPCGSRPSRLTGGGGGSGGPPTNEMEEEQGLKYG
AQHVIKLFVPVSLCMLVVVATINSISFYNSTDVYLLYTPFHEQSPEPSVK
FWSALANSLILMSVVVVMTFLLIVLYKKRCYRIIHGWLILSSFMLLFIFT
YLYLEELLRAYNIPMDYPTALLIMWNFGVVGMMSIHWQGPLRLQQGYLIF
VAALMALVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRILVETAQER
NEQIFPALIYSSTVVYALVNTVTPQQSQATASSSPSSSNSTTTTRATQNS
LASPEAAAASGQRTGNSHPRQNQRDDGSVLATEGMPLVTFKSNLRGNAEA
AGFTQEWSANLSERVARRQIEVQSTQSGNAQRSNEYRTVTAPDQNHPDGQ
EERGIKLGLGDFIFYSVLVGKASSYGDWTTTIACFVAILIGLCLTLLLLA
IWRKALPALPISITFGLIFCFATSAVVKPFMEDLSAKQVFIASFLDH

BO17804.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-PE 541 CG18803-PE 1..541 1..541 2765 100 Plus
Psn-PA 541 CG18803-PA 1..541 1..541 2765 100 Plus
Psn-PD 527 CG18803-PD 1..527 1..541 2667 97.4 Plus
Psn-PB 527 CG18803-PB 1..527 1..541 2667 97.4 Plus
Psn-PC 508 CG18803-PC 1..508 1..541 2547 93.9 Plus