Clone Sequence Records
BO17804.3prime Sequence
632 bp (551 high quality bases) assembled on 2006-10-13
> BO17804.3prime
ATGGTCTAGAAAGCTTGCTCCTTCACCTGCTTGGCCGATAGATCCTCCAT
GAACGGCTTGACCACCGCACTAGTGGCGAAGCAAAATATCAATCCCAACG
TGATTGAGATGGGCAGGGCGGGTAGCGCCTTGCGCCAAATGGCCAGAAGC
AGAAGAGTGAGGCAGAGTCCAATGAGGATGGCCACAAAGCAAGCGATTGT
GGTCGTCCAGTCGCCGTAGCTGGAGGCCTTGCCCACTAATACCGAGTAGA
AGATGAAGTCGCCGAGGCCAAGCTTTATGCCACGTTCTTCTTGCCCATCC
GGATGATTCTGATCCGGAGCTGTTACTGTCCTATACTCGTTGGAGCGCTG
AGCGTTTCCACTCTGAGTACTTTGAACTTCAATCTGGCGACGAGCCACAC
GTTCGCTCAAGTTAGCTGACCACTCTTGCGTGAAACCCGCAGCCTCAGCG
TTTCCGCGCAAATTGCTTTTAAAAGTCACAAGTGGCATACCTTCAGTTGC
CAGTACACTGCCGTCATCCCGCTGATTCTGTCGAGGATGGGAGTTACCTG
TGCGTTGGCCACTAGCCGCTGCTGCCTCTGGCGAAGCCAGCGAGTTCTGC
GTGGCCCTCGTGGTTGTGGTGGAATTGCTGGA
BO17804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18803-PA | 1626 | Psn-RA | 1009..1617 | 632..24 | 2970 | 99.5 | Minus |
CG18803-PB | 1584 | Psn-RB | 1150..1575 | 449..24 | 2080 | 99.5 | Minus |
CG18803-PB | 1584 | Psn-RB | 1009..1150 | 632..491 | 685 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psn-RE | 1891 | CG18803-RE | 1167..1775 | 632..24 | 3000 | 99.5 | Minus |
Psn-RA | 2048 | CG18803-RA | 1324..1932 | 632..24 | 3000 | 99.5 | Minus |
Psn-RD | 1879 | CG18803-RD | 1338..1763 | 449..24 | 2100 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20434781..20435040 | 283..24 | 1270 | 99.2 | Minus |
3L | 28110227 | 3L | 20434161..20434344 | 632..449 | 905 | 99.5 | Minus |
3L | 28110227 | 3L | 20434547..20434714 | 449..282 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:38:52 has no hits.
BO17804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:24 Download gff for
BO17804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18803-PA | 1010..1617 | 24..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:57 Download gff for
BO17804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RA | 1325..1932 | 24..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:38 Download gff for
BO17804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RA | 1325..1932 | 24..631 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:38 Download gff for
BO17804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20434162..20434344 | 449..631 | 99 | -> | Minus |
3L | 20434548..20434712 | 284..448 | 100 | -> | Minus |
3L | 20434781..20435040 | 24..283 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:57 Download gff for
BO17804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20427262..20427444 | 449..631 | 99 | -> | Minus |
arm_3L | 20427648..20427812 | 284..448 | 100 | -> | Minus |
arm_3L | 20427881..20428140 | 24..283 | 99 | | Minus |
BO17804.5prime Sequence
627 bp (625 high quality bases) assembled on 2006-10-13
> BO17804.5prime
GAAGTTATCAGTCGACATGGCTGCTGTCAATCTCCAGGCTTCGTGCTCCT
CCGGGCTCGCCTCTGAGGATGACGCCAATGTGGGCAGCCAGATAGGCGCG
GCGGAGCGTTTGGAACGACCTCCAAGGCGGCAACAGCAGCGGAACAACTA
CGGCTCCAGCAATCAGGATCAACCGGATGCTGCCATACTTGCTGTGCCCA
ATGTGGTGATGCGTGAACCTTGTGGCTCGCGCCCTTCAAGACTGACCGGT
GGAGGAGGCGGCAGTGGTGGTCCGCCCACAAATGAAATGGAGGAAGAGCA
GGGCCTGAAATACGGGGCCCAGCATGTGATCAAGTTATTCGTCCCCGTCT
CCCTTTGCATGCTGGTAGTGGTGGCTACCATCAACTCCATCAGCTTCTAC
AACAGCACGGATGTCTATCTCCTCTACACACCTTTCCATGAACAATCGCC
CGAGCCTAGTGTTAAGTTCTGGAGTGCCTTGGCGAACTCCCTGATCCTGA
TGAGCGTGGTGGTGGTGATGACCTTTTTGCTGATTGTTTTGTACAAGAAG
CGTTGCTATCGCATCATTCACGGGTGGCTGATTCTCTCCTCCTTCATGTT
GTTGTTCATTTTTACGTACTTATATTT
BO17804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18803-PA | 1626 | Psn-RA | 1..611 | 17..627 | 3030 | 99.8 | Plus |
CG18803-PB | 1584 | Psn-RB | 1..611 | 17..627 | 3030 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psn-RE | 1891 | CG18803-RE | 159..769 | 17..627 | 3040 | 99.8 | Plus |
Psn-RD | 1879 | CG18803-RD | 189..799 | 17..627 | 3040 | 99.8 | Plus |
Psn-RC | 1778 | CG18803-RC | 145..755 | 17..627 | 3040 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20433072..20433310 | 182..420 | 1195 | 100 | Plus |
3L | 28110227 | 3L | 20433378..20433584 | 421..627 | 1020 | 99.5 | Plus |
3L | 28110227 | 3L | 20432842..20433007 | 17..182 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:39:04 has no hits.
BO17804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:26 Download gff for
BO17804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18803-PB | 1..611 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:41:59 Download gff for
BO17804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RC | 140..755 | 9..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:41 Download gff for
BO17804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RC | 140..755 | 9..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:41 Download gff for
BO17804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20432837..20433006 | 9..181 | 97 | -> | Plus |
3L | 20433072..20433310 | 182..420 | 100 | -> | Plus |
3L | 20433378..20433584 | 421..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:41:59 Download gff for
BO17804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20425937..20426106 | 9..181 | 97 | -> | Plus |
arm_3L | 20426172..20426410 | 182..420 | 100 | -> | Plus |
arm_3L | 20426478..20426684 | 421..627 | 99 | | Plus |
BO17804.complete Sequence
1657 bp assembled on 2008-08-14
GenBank Submission: FJ634221
> BO17804.complete
GAAGTTATCAGTCGACATGGCTGCTGTCAATCTCCAGGCTTCGTGCTCCT
CCGGGCTCGCCTCTGAGGATGACGCCAATGTGGGCAGCCAGATAGGCGCG
GCGGAGCGTTTGGAACGACCTCCAAGGCGGCAACAGCAGCGGAACAACTA
CGGCTCCAGCAATCAGGATCAACCGGATGCTGCCATACTTGCTGTGCCCA
ATGTGGTGATGCGTGAACCTTGTGGCTCGCGCCCTTCAAGACTGACCGGT
GGAGGAGGCGGCAGTGGTGGTCCGCCCACAAATGAAATGGAGGAAGAGCA
GGGCCTGAAATACGGGGCCCAGCATGTGATCAAGTTATTCGTCCCCGTCT
CCCTTTGCATGCTGGTAGTGGTGGCTACCATCAACTCCATCAGCTTCTAC
AACAGCACGGATGTCTATCTCCTCTACACACCTTTCCATGAACAATCGCC
CGAGCCTAGTGTTAAGTTCTGGAGTGCCTTGGCGAACTCCCTGATCCTGA
TGAGCGTGGTGGTGGTGATGACCTTTTTGCTGATTGTTTTGTACAAGAAG
CGTTGCTATCGCATCATTCACGGCTGGCTGATTCTCTCCTCCTTCATGTT
GTTGTTCATTTTTACGTACTTATATTTGGAAGAGCTTCTTCGCGCCTATA
ACATACCGATGGACTACCCTACTGCACTACTGATTATGTGGAACTTTGGA
GTGGTCGGAATGATGTCCATCCATTGGCAGGGACCTCTGCGGTTGCAGCA
AGGATATCTCATTTTCGTGGCAGCCTTGATGGCCTTGGTGTTCATTAAAT
ACCTGCCTGAATGGACTGCCTGGGCTGTATTGGCTGCCATTTCTATTTGG
GATCTTATTGCTGTCCTTTCGCCAAGAGGACCCCTCCGCATTCTGGTGGA
AACGGCTCAGGAGCGAAATGAGCAAATCTTCCCCGCTCTGATTTATTCAT
CCACTGTCGTTTACGCACTTGTAAACACTGTTACGCCGCAGCAATCGCAG
GCCACAGCTTCCTCCTCGCCGTCGTCCAGCAACTCCACCACAACCACGAG
GGCCACGCAGAACTCGCTGGCTTCGCCAGAGGCAGCAGCGGCTAGTGGCC
AACGCACAGGTAACTCCCATCCTCGACAGAATCAGCGGGATGACGGCAGT
GTACTGGCAACTGAAGGTATGCCACTTGTGACTTTTAAAAGCAATTTGCG
CGGAAACGCTGAGGCTGCGGGTTTCACGCAAGAGTGGTCAGCTAACTTGA
GCGAACGTGTGGCTCGTCGCCAGATTGAAGTTCAAAGTACTCAGAGTGGA
AACGCTCAGCGCTCCAACGAGTATAGGACAGTAACAGCTCCGGATCAGAA
TCATCCGGATGGGCAAGAAGAACGTGGCATAAAGCTTGGCCTCGGCGACT
TCATCTTCTACTCGGTATTAGTGGGCAAGGCCTCCAGCTACGGCGACTGG
ACGACCACAATCGCTTGCTTTGTGGCCATCCTCATTGGACTCTGCCTCAC
TCTTCTGCTTCTGGCCATTTGGCGCAAGGCGCTACCCGCCCTGCCCATCT
CAATAACGTTCGGATTGATATTTTGCTTCGCCACTAGTGCGGTGGTCAAG
CCGTTCATGGAGGATCTATCGGCCAAGCAGGTGTTTATAGCAAGCTTTCT
AGACCAT
BO17804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psn-RE | 1626 | CG18803-PE | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Psn-RA | 1626 | CG18803-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Psn-RD | 1584 | CG18803-PD | 1..1150 | 17..1166 | 5750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psn-RE | 1891 | CG18803-RE | 159..1781 | 17..1639 | 8115 | 100 | Plus |
Psn-RA | 2048 | CG18803-RA | 316..1938 | 17..1639 | 8115 | 100 | Plus |
Psn-RD | 1879 | CG18803-RD | 189..1338 | 17..1166 | 5750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20434781..20435046 | 1374..1639 | 1330 | 100 | Plus |
3L | 28110227 | 3L | 20434082..20434344 | 946..1208 | 1300 | 99.6 | Plus |
3L | 28110227 | 3L | 20433072..20433310 | 182..420 | 1195 | 100 | Plus |
3L | 28110227 | 3L | 20433641..20433861 | 631..851 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 20433378..20433587 | 421..630 | 1050 | 100 | Plus |
3L | 28110227 | 3L | 20434547..20434714 | 1208..1375 | 840 | 100 | Plus |
3L | 28110227 | 3L | 20432842..20433007 | 17..182 | 830 | 100 | Plus |
3L | 28110227 | 3L | 20433933..20434032 | 851..950 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:12:11 has no hits.
BO17804.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:08 Download gff for
BO17804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RA | 311..1945 | 9..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:10 Download gff for
BO17804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RA | 316..1938 | 17..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:01 Download gff for
BO17804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RA | 316..1938 | 17..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:10 Download gff for
BO17804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RA | 316..1938 | 17..1641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:10 Download gff for
BO17804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20434781..20435046 | 1374..1641 | 99 | | Plus |
3L | 20434548..20434712 | 1209..1373 | 100 | -> | Plus |
3L | 20434087..20434344 | 951..1208 | 100 | -> | Plus |
3L | 20432842..20433006 | 17..181 | 100 | -> | Plus |
3L | 20433072..20433310 | 182..420 | 100 | -> | Plus |
3L | 20433378..20433587 | 421..630 | 100 | -> | Plus |
3L | 20433641..20433861 | 631..851 | 100 | -> | Plus |
3L | 20433934..20434032 | 852..950 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:10 Download gff for
BO17804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20426478..20426687 | 421..630 | 100 | -> | Plus |
arm_3L | 20426741..20426961 | 631..851 | 100 | -> | Plus |
arm_3L | 20425942..20426106 | 17..181 | 100 | -> | Plus |
arm_3L | 20426172..20426410 | 182..420 | 100 | -> | Plus |
arm_3L | 20427034..20427132 | 852..950 | 100 | -> | Plus |
arm_3L | 20427187..20427444 | 951..1208 | 100 | -> | Plus |
arm_3L | 20427648..20427812 | 1209..1373 | 100 | -> | Plus |
arm_3L | 20427881..20428146 | 1374..1641 | 99 | | Plus |
BO17804.pep Sequence
Translation from 16 to 1657
> BO17804.pep
MAAVNLQASCSSGLASEDDANVGSQIGAAERLERPPRRQQQRNNYGSSNQ
DQPDAAILAVPNVVMREPCGSRPSRLTGGGGGSGGPPTNEMEEEQGLKYG
AQHVIKLFVPVSLCMLVVVATINSISFYNSTDVYLLYTPFHEQSPEPSVK
FWSALANSLILMSVVVVMTFLLIVLYKKRCYRIIHGWLILSSFMLLFIFT
YLYLEELLRAYNIPMDYPTALLIMWNFGVVGMMSIHWQGPLRLQQGYLIF
VAALMALVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRILVETAQER
NEQIFPALIYSSTVVYALVNTVTPQQSQATASSSPSSSNSTTTTRATQNS
LASPEAAAASGQRTGNSHPRQNQRDDGSVLATEGMPLVTFKSNLRGNAEA
AGFTQEWSANLSERVARRQIEVQSTQSGNAQRSNEYRTVTAPDQNHPDGQ
EERGIKLGLGDFIFYSVLVGKASSYGDWTTTIACFVAILIGLCLTLLLLA
IWRKALPALPISITFGLIFCFATSAVVKPFMEDLSAKQVFIASFLDH
BO17804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psn-PE | 541 | CG18803-PE | 1..541 | 1..541 | 2765 | 100 | Plus |
Psn-PA | 541 | CG18803-PA | 1..541 | 1..541 | 2765 | 100 | Plus |
Psn-PD | 527 | CG18803-PD | 1..527 | 1..541 | 2667 | 97.4 | Plus |
Psn-PB | 527 | CG18803-PB | 1..527 | 1..541 | 2667 | 97.4 | Plus |
Psn-PC | 508 | CG18803-PC | 1..508 | 1..541 | 2547 | 93.9 | Plus |