Clone Sequence Records
BO17805.3prime Sequence
833 bp (697 high quality bases) assembled on 2006-10-13
> BO17805.3prime
ATGGTCTAGAAAGCTTGCCTTCACGTATAGCATGCGCCGAGCACACTCTT
TTCCCACGAGCTTGCTGTACTCAATAATGATATCGTCATCGGAGACGGTC
CCACGCAGCTGCCTAAAGTGCTTGTAGTCTGTGCGGGTTCTTCCACCCAA
GAGCAGCTTAACTTCGTCCAAATGCTCCATCAAAAACTCATTCACATCCC
TAGCTGCAGGATCTTCGTTTAAGCGCTGGTATTTATGTTCGTCTAGCTTA
GCACGAATAACATCGGTGAGCGGTAGCCATTCATAGGTCTCCGGGCACAG
CAAGTAAGAGGGGGACAACTTGCCCTTGTAGCGCATTTTGGGACAGGAGT
GTATGTAGAAACCCATATAGTAATACTTGAGAGAAGGCACCTTCTCGGCG
AGCGACTGCACCAATTCAATTTCCCTGAGTGAACCATATGTGCCAAGCGA
TAAAAAGCTATAGTCCGGATCGTAGAAAAAGTACACCGAGCTTACACAAC
CCGGCAGAATGTCAATCACGCCGACGGCAATCAACTTGTCGTCCAGCCAG
TACTGCTGATGAAACGAACCGTAGCCCATTTCGGGACCATCCCAGGGTTT
CTCATTCTGTAGGGGAGTCGCCTGCAGATGCTCCTTGTACGCGTCCTGAT
CCTTTGGCGGATCATTATGTATCGATATCTGATACTTCTTATAGAGCGCA
AAACTCTGGGGCAGGGTCCGCCGGAACTCGTCGTCGTAGACGTGAATTAA
GCGCAACTTTAGCCGATGTTTGTTTGTCTCGCTGTCCGTGTTCAAAAAGT
CGCGAAGTGTCTTTTCCTGGGTAAGGGATTTCG
BO17805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9204-PA | 1434 | Ate1-RA | 617..1431 | 833..19 | 4025 | 99.7 | Minus |
| CG9204-PB | 1455 | Ate1-RB | 638..1452 | 833..19 | 4025 | 99.7 | Minus |
| CG9204-PC | 1437 | Ate1-RC | 845..1434 | 608..19 | 2950 | 100 | Minus |
| CG9204-PC | 1437 | Ate1-RC | 617..693 | 833..757 | 360 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RB | 1643 | CG9204-RB | 746..1560 | 833..19 | 4045 | 99.8 | Minus |
| Ate1-RA | 1622 | CG9204-RA | 725..1539 | 833..19 | 4045 | 99.8 | Minus |
| Ate1-RD | 1646 | CG9204-RD | 974..1563 | 608..19 | 2950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20255623..20255812 | 420..609 | 935 | 99.5 | Plus |
| 2R | 25286936 | 2R | 20255408..20255574 | 261..427 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 20255197..20255349 | 109..261 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 20255886..20256034 | 607..755 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 20255049..20255141 | 19..111 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 20256431..20256512 | 752..833 | 380 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:46:55 has no hits.
BO17805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:26 Download gff for
BO17805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9204-PB | 638..1455 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:31 Download gff for
BO17805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 725..1546 | 11..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:09 Download gff for
BO17805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 725..1546 | 11..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:09 Download gff for
BO17805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20255042..20255138 | 11..108 | 96 | <- | Plus |
| 2R | 20255197..20255348 | 109..260 | 100 | <- | Plus |
| 2R | 20255408..20255571 | 261..424 | 100 | <- | Plus |
| 2R | 20255628..20255809 | 425..606 | 100 | <- | Plus |
| 2R | 20255886..20256035 | 607..756 | 99 | <- | Plus |
| 2R | 20256436..20256512 | 757..833 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:31 Download gff for
BO17805.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16142547..16142643 | 11..108 | 96 | <- | Plus |
| arm_2R | 16142702..16142853 | 109..260 | 100 | <- | Plus |
| arm_2R | 16142913..16143076 | 261..424 | 100 | <- | Plus |
| arm_2R | 16143133..16143314 | 425..606 | 100 | <- | Plus |
| arm_2R | 16143391..16143540 | 607..756 | 99 | <- | Plus |
| arm_2R | 16143941..16144017 | 757..833 | 98 | | Plus |
BO17805.5prime Sequence
774 bp (728 high quality bases) assembled on 2006-10-13
> BO17805.5prime
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCCGCAGCACCGATC
TCAAACAAGCCGTGCAAGAAGGCCAAGCAGATGCGATTGGATCGACGGCT
GGCCAAGCTGGGAGACTCGGCCTCCTACTCAACGAAATCCCTTACCCAGG
AAAAGACACTTCGCGACTTCTTGAACACGGACAGCGAGACAAACAAACAT
CGGCTAAAGCTGCGCTTAATTCACGTCTACGACGACGAGTTCCGGCGGAC
CCTGCCCCAGAGTTTTGCGCTCTA
BO17805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9204-PA | 1434 | Ate1-RA | 1..758 | 17..774 | 3790 | 100 | Plus |
| CG9204-PC | 1437 | Ate1-RC | 1..693 | 17..709 | 3465 | 100 | Plus |
| CG9204-PB | 1455 | Ate1-RB | 1..521 | 17..537 | 2605 | 100 | Plus |
| CG9204-PB | 1455 | Ate1-RB | 542..779 | 537..774 | 1190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RA | 1622 | CG9204-RA | 109..866 | 17..774 | 3790 | 100 | Plus |
| Ate1-RB | 1643 | CG9204-RB | 109..887 | 17..774 | 3570 | 97.3 | Plus |
| Ate1-RC | 1625 | CG9204-RC | 109..801 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20256690..20257125 | 536..101 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 20256431..20256608 | 714..537 | 875 | 99.4 | Minus |
| 2R | 25286936 | 2R | 20257196..20257282 | 103..17 | 435 | 100 | Minus |
| 2R | 25286936 | 2R | 20255971..20256037 | 774..708 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:08:32 has no hits.
BO17805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:27 Download gff for
BO17805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9204-PA | 1..757 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:14 Download gff for
BO17805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..865 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:41 Download gff for
BO17805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..865 | 17..773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:41 Download gff for
BO17805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20255972..20256035 | 710..773 | 100 | <- | Minus |
| 2R | 20256436..20256608 | 537..709 | 100 | <- | Minus |
| 2R | 20256690..20257124 | 102..536 | 100 | <- | Minus |
| 2R | 20257198..20257282 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:14 Download gff for
BO17805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16143477..16143540 | 710..773 | 100 | <- | Minus |
| arm_2R | 16143941..16144113 | 537..709 | 100 | <- | Minus |
| arm_2R | 16144195..16144629 | 102..536 | 100 | <- | Minus |
| arm_2R | 16144703..16144787 | 17..101 | 100 | | Minus |
BO17805.complete Sequence
1465 bp assembled on 2006-10-11
GenBank Submission: FJ634222
> BO17805.complete
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCCGCAGCACCGATC
TCAAACAAGCCGTGCAAGAAGGCCAAGCAGATGCGATTGGATCGACGGCT
GGCCAAGCTGGGAGACTCGGCCTCCTACTCAACGAAATCCCTTACCCAGG
AAAAGACACTTCGCGACTTCTTGAACACGGACAGCGAGACAAACAAACAT
CGGCTAAAGCTGCGCTTAATTCACGTCTACGACGACGAGTTCCGGCGGAC
CCTGCCCCAGAGTTTTGCGCTCTATAAGAAGTATCAGATATCGATACATA
ATGATCCGCCAAAGGATCAGGACGCGTACAAGGAGCATCTGCAGGCGACT
CCCCTACAGAATGAGAAACCCTGGGATGGTCCCGAAATGGGCTACGGTTC
GTTTCATCAGCAGTACTGGCTGGACGACAAGTTGATTGCCGTCGGCGTGA
TTGACATTCTGCCGGGTTGTGTAAGCTCGGTGTACTTTTTCTACGATCCG
GACTATAGCTTTTTATCGCTTGGCACATATGGTTCACTCAGGGAAATTGA
ATTGGTGCAGTCGCTCGCCGAGAAGGTGCCTTCTCTCAAGTATTACTATA
TGGGTTTCTACATACACTCCTGTCCCAAAATGCGCTACAAGGGCAAGTTG
TCCCCCTCTTACTTGCTGTGCCCGGAGACCTATGAATGGCTACCGCTCAC
CGATGTTATTCGTGCTAAGCTAGACGAACATAAATACCAGCGCTTAAACG
AAGATCCTGCAGCTAGGGATGTGAATGAGTTTTTGATGGAGCATTTGGAC
GAAGTTAAGCTGCTCTTGGGTGGAAGAACCCGCACAGACTACAAGCACTT
TAGGCAGCTGCGTGGGACCGTCTCCGATGACGATATCATTATTGAGTACA
GCAAGCTCGTGGGAAAAGAGTGTGCTCGGCGCATGCTATACGTGAAGGCA
AGCTTTCTAGACCAT
BO17805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RA | 1434 | CG9204-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
| Ate1-RB | 1455 | CG9204-PB | 1..1452 | 17..1447 | 6910 | 98.6 | Plus |
| Ate1-RC | 1437 | CG9204-PC | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RA | 1622 | CG9204-RA | 109..1539 | 17..1447 | 7155 | 100 | Plus |
| Ate1-RB | 1643 | CG9204-RB | 109..1560 | 17..1447 | 6910 | 98.6 | Plus |
| Ate1-RC | 1625 | CG9204-RC | 109..801 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20256690..20257125 | 536..101 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 20255623..20255812 | 1046..857 | 935 | 99.5 | Minus |
| 2R | 25286936 | 2R | 20256431..20256608 | 714..537 | 875 | 99.4 | Minus |
| 2R | 25286936 | 2R | 20255408..20255574 | 1205..1039 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 20255197..20255349 | 1357..1205 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 20255886..20256037 | 859..708 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 20255049..20255141 | 1447..1355 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 20257196..20257282 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:20:10 has no hits.
BO17805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:42 Download gff for
BO17805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 1..1434 | 17..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:20 Download gff for
BO17805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 100..1537 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:20 Download gff for
BO17805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..1539 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:42 Download gff for
BO17805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 100..1537 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:28 Download gff for
BO17805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..1539 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:28 Download gff for
BO17805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20257198..20257282 | 17..101 | 100 | | Minus |
| 2R | 20255047..20255138 | 1358..1449 | 97 | <- | Minus |
| 2R | 20255197..20255348 | 1206..1357 | 100 | <- | Minus |
| 2R | 20255408..20255571 | 1042..1205 | 100 | <- | Minus |
| 2R | 20255628..20255809 | 860..1041 | 100 | <- | Minus |
| 2R | 20255886..20256035 | 710..859 | 100 | <- | Minus |
| 2R | 20256436..20256608 | 537..709 | 100 | <- | Minus |
| 2R | 20256690..20257124 | 102..536 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:20 Download gff for
BO17805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16144703..16144787 | 17..101 | 100 | | Minus |
| arm_2R | 16142552..16142643 | 1358..1449 | 97 | <- | Minus |
| arm_2R | 16142702..16142853 | 1206..1357 | 100 | <- | Minus |
| arm_2R | 16142913..16143076 | 1042..1205 | 100 | <- | Minus |
| arm_2R | 16143133..16143314 | 860..1041 | 100 | <- | Minus |
| arm_2R | 16143391..16143540 | 710..859 | 100 | <- | Minus |
| arm_2R | 16143941..16144113 | 537..709 | 100 | <- | Minus |
| arm_2R | 16144195..16144629 | 102..536 | 100 | <- | Minus |
BO17805.pep Sequence
Translation from 16 to 1465
> BO17805.pep
MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR
CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE
SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT
AQRKPTKQATAAAVEAPTLGSNKSAAPISNKPCKKAKQMRLDRRLAKLGD
SASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFRRTLPQSF
ALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGYGSFHQQY
WLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLREIELVQSL
AEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLPLTDVIRA
KLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYKHFRQLRG
TVSDDDIIIEYSKLVGKECARRMLYVKASFLDH
BO17805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-PA | 477 | CG9204-PA | 1..477 | 1..477 | 2548 | 100 | Plus |
| Ate1-PB | 484 | CG9204-PB | 1..484 | 1..477 | 2530 | 98.6 | Plus |
| Ate1-PC | 478 | CG9204-PC | 1..478 | 1..477 | 2338 | 92.9 | Plus |
| Ate1-PD | 485 | CG9204-PD | 1..485 | 1..477 | 2320 | 91.6 | Plus |
