Clone BO17806 Report

Search the DGRC for BO17806

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptena-RD
Protein status:BO17806.pep: validated full length
Sequenced Size:2095

Clone Sequence Records

BO17806.3prime Sequence

720 bp (644 high quality bases) assembled on 2006-10-13

> BO17806.3prime
ATGGTCTAGAAAGCTTGCTCTGCGATTAAACTCCGATTTGATAGCATCTA
TTATCTCGTTCTTGACTTTCTGAATCTCCAATCGCATTTCGCGCACAATC
TCAGCCTTCAGTGTGTCCAAGTCGCCATTGGAAAGCGCCAGCGACAGGCC
ATCGCCATTGACCTTGAGAATGGTCTCTTCGCTGGCACTACCGAATCGTT
TGCGCATGGGTCGCGGGGACTCGCCGCCACTGTTCGTTGTGTTGCTACCA
GCACCGCCCGAGTTACCATTCGCTCCTTCATGGCCACTTCCAGCAGATCC
GCTGCCAGCTCCGCCGCTTAGCTTATGGGGCAGTGTATTGGACTTTTCCC
AGGGGCGTTTTTTCACTTCGGCTTCAGGATCGGGATCCTTCTTTTCTGCT
TGGGCGCGTCGTCGTGCCAGCGTCTTGGCCATCTCGTCCATCATGGAGGC
CATGCCATTAGAGCTTCGTCCTATGGTTCCATAGTTGCCGCTGCCGCCAC
TGGACGTGCTGCTGCCGCTATTCTCCGGAGCAGAGGTGGTGACCTTATTC
TTTTTGAGCTTGATCTGCTGCAGCTGGGAGGCCAGCGAGCCCATGAGATC
TGCCTGGGGATCTTCCTTCTTAGGCGCTCCTCCCAATCCCGGCGGCGGAG
GCGGTGGTGGTGGTGCCCCTGGTCCGCCCGGTGCTGGCGGTGGTCCGCCA
CCCATTGCTGGCGGTGCCGG

BO17806.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15112-PB 2490 ena-RB 1786..2487 720..19 3510 100 Minus
CG15112-PA 2055 ena-RA 1351..2052 720..19 3510 100 Minus
CG15112-PC 2055 ena-RC 1351..2052 720..19 3510 100 Minus
CG15112-PD 2064 ena-RD 1360..2061 720..19 3510 100 Minus
CG15112-PE 2055 ena-RE 1351..2052 720..19 3510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
ena-RG 4417 CG15112-RG 1696..2397 720..19 3510 100 Minus
ena-RF 4107 CG15112-RF 2493..3194 720..19 3510 100 Minus
ena-RE 3446 CG15112-RE 1832..2533 720..19 3510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19161194..19161417 384..161 1120 100 Minus
2R 25286936 2R 19160726..19160904 720..542 895 100 Minus
2R 25286936 2R 19160972..19161132 545..385 805 100 Minus
2R 25286936 2R 19161474..19161593 164..45 600 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:02:02 has no hits.

BO17806.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:28 Download gff for BO17806.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15112-PE 1351..2055 18..720 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:47:01 Download gff for BO17806.3prime
Subject Subject Range Query Range Percent Splice Strand
ena-RE 1832..2533 19..720 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:38 Download gff for BO17806.3prime
Subject Subject Range Query Range Percent Splice Strand
ena-RE 1832..2533 19..720 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:38 Download gff for BO17806.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19160726..19160902 544..720 100 -> Minus
2R 19160974..19161132 385..543 100 -> Minus
2R 19161194..19161415 163..384 100 -> Minus
2R 19161476..19161593 45..162 100 -> Minus
2R 19161660..19161685 19..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:47:01 Download gff for BO17806.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15048231..15048407 544..720 100 -> Minus
arm_2R 15048479..15048637 385..543 100 -> Minus
arm_2R 15048699..15048920 163..384 100 -> Minus
arm_2R 15048981..15049098 45..162 100 -> Minus
arm_2R 15049165..15049190 19..44 100   Minus

BO17806.5prime Sequence

702 bp (701 high quality bases) assembled on 2006-10-13

> BO17806.5prime
GAAGTTATCAGTCGACATGACTGAGCAGAGTATTATCGGGGCGCGGGCCT
CTGTGATGGTGTACGATGACAACCAGAAGAAGTGGGTGCCATCGGGCAGC
TCGTCGGGATTGAGCAAGGTGCAGATCTACCACCACCAGCAGAACAACAC
GTTCCGTGTGGTGGGACGAAAGCTGCAGGATCACGAGGTGGTCATCAACT
GCTCCATTCTGAAGGGACTGAAGTACAATCAGGCCACGGCAACATTTCAT
CAGTGGCGCGATTCGAAATTCGTTTACGGCTTGAACTTCTCGAGCCAAAA
TGATGCGGAGAACTTTGCTAGGGCCATGATGCATGCCCTGGAAGTGCTCA
GTGGTCGCGTGGCGAACAACCCAGGTGGACCGCCCACAAATGGCAATGGC
TATGAGGAGGACATGGGCTATCGCACGATGACCAGCGAGGATGCAGCCAT
ACTGCGTCAGAACAACAGCATAGGTGGGCACGTCACGCCCTCGGCCCAGA
CGCCCACCTCGCAGACCAACCAGAATAACATCCCCCAGAGCCCGCCGACG
CCCCAGGGTCATCATCGCACCAGCAGGAATTCCCTCAGCGCCCCACCGGC
ACCACAGCCCCAACAGCAGCAGCAGCAGCAGCAGGCGCAGCAAATGGGTC
AGCCAGGATCCCACTATGGACCCACTGGAAATGGACCCACTTCGAATGGC
CT

BO17806.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15112-PD 2064 ena-RD 1..686 17..702 3430 100 Plus
CG15112-PA 2055 ena-RA 1..560 17..576 2800 100 Plus
CG15112-PC 2055 ena-RC 1..560 17..576 2800 100 Plus
CG15112-PE 2055 ena-RE 1..560 17..576 2800 100 Plus
CG15112-PB 2490 ena-RB 441..995 22..576 2775 100 Plus
CG15112-PA 2055 ena-RA 558..674 586..702 585 100 Plus
CG15112-PC 2055 ena-RC 558..674 586..702 585 100 Plus
CG15112-PE 2055 ena-RE 558..674 586..702 585 100 Plus
CG15112-PB 2490 ena-RB 993..1109 586..702 585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
ena-RG 4417 CG15112-RG 406..1091 17..702 3430 100 Plus
ena-RD 2878 CG15112-RD 406..1091 17..702 3430 100 Plus
ena-RB 3669 CG15112-RB 695..1375 22..702 3405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19158734..19159057 22..345 1620 100 Plus
2R 25286936 2R 19159120..19159353 344..577 1170 100 Plus
2R 25286936 2R 19159781..19159908 575..702 640 100 Plus
Blast to na_te.dros performed on 2015-02-05 01:31:15 has no hits.

BO17806.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:29 Download gff for BO17806.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15112-PD 1..686 17..702 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:33 Download gff for BO17806.5prime
Subject Subject Range Query Range Percent Splice Strand
ena-RD 406..1091 17..702 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:43 Download gff for BO17806.5prime
Subject Subject Range Query Range Percent Splice Strand
ena-RD 406..1091 17..702 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:43 Download gff for BO17806.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19158734..19159055 22..343 100 -> Plus
2R 19159120..19159352 344..576 100 -> Plus
2R 19159783..19159908 577..702 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:33 Download gff for BO17806.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15047288..15047413 577..702 100   Plus
arm_2R 15046239..15046560 22..343 100 -> Plus
arm_2R 15046625..15046857 344..576 100 -> Plus

BO17806.complete Sequence

2095 bp assembled on 2007-03-23

GenBank Submission: FJ634223

> BO17806.complete
GAAGTTATCAGTCGACATGACTGAGCAGAGTATTATCGGGGCGCGGGCCT
CTGTGATGGTGTACGATGACAACCAGAAGAAGTGGGTGCCATCGGGCAGC
TCGTCGGGATTGAGCAAGGTGCAGATCTACCACCACCAGCAGAACAACAC
GTTCCGTGTGGTGGGACGAAAGCTGCAGGATCACGAGGTGGTCATCAACT
GCTCCATTCTGAAGGGACTGAAGTACAATCAGGCCACGGCAACATTTCAT
CAGTGGCGCGATTCGAAATTCGTTTACGGCTTGAACTTCTCGAGCCAAAA
TGATGCGGAGAACTTTGCTAGGGCCATGATGCATGCCCTGGAAGTGCTCA
GTGGTCGCGTGGCGAACAACCCAGGTGGACCGCCCACAAATGGCAATGGC
TATGAGGAGGACATGGGCTATCGCACGATGACCAGCGAGGATGCAGCCAT
ACTGCGTCAGAACAACAGCATAGGTGGGCACGTCACGCCCTCGGCCCAGA
CGCCCACCTCGCAGACCAACCAGAATAACATCCCCCAGAGCCCGCCGACG
CCCCAGGGTCATCATCGCACCAGCAGGAATTCCCTCAGCGCCCCACCGGC
ACCACAGCCCCAACAGCAGCAGCAGCAGCAGCAGGCGCAGCAAATGGGTC
AGCCAGGATCCCACTATGGACCCACTGGAAATGGACCCACTTCGAATGGC
CTGCCACAGCAGGTGAACTCACAGATTCCGCCGGCACCGCAGCAGCAGCC
ACAACAGCAACAGTTTCAGCAGCAGCAGCAGCAACAGCAATATCAGCAAA
TGGTCCAGGCGGGCTATGCGCCCTCTCAGTATCAGCAACCCCACTACGTG
CTCTCCAATTCTAATCCCAATCTAACTGTGCACCAATACCCGACACAGCA
GGCGCAGCAGCAGCCACCGCAAGCGCCACAGCCGCCGCTCCAGAACGGTG
GAATGTACATGGTGGGTCATGGTCATCTACCGAGCTCCGCGAGCGCCAAC
AGTGTTGTGTACGCCAGCCAGCAGCAGATGCTCCCGCAGGCGCATCCACA
GGCACCTCAGGCGCCGACGATGCCAGGTCCGGGCTACGGTGGTCCACCAG
TACCTCCGCCCCAGCAGCAGGCAGAGAATCCGTACGGTCAGGTACCCATG
CCGCCGCCAATGAATCCGTCACAGCAACAGCAGCCAGGTCAGGTGCCTCT
AAACCGGATGAGCAGCCAGGGTGGTCCAGGTGGCCCACCGGCTCCTGCTC
CGCCCCCGCCACCACCCAGTTTTGGTGGAGCTGCTGGAGGAGGACCACCA
CCACCAGCCCCGCCACAGATGTTCAACGGCGCACCGCCGCCGCCAGCCAT
GGGCGGTGGACCACCGCCGGCTCCACCGGCACCGCCAGCAATGGGTGGCG
GACCACCGCCAGCACCGGGCGGACCAGGGGCACCACCACCACCGCCTCCG
CCGCCGGGATTGGGAGGAGCGCCTAAGAAGGAAGATCCCCAGGCAGATCT
CATGGGCTCGCTGGCCTCCCAGCTGCAGCAGATCAAGCTCAAAAAGAATA
AGGTCACCACCTCTGCTCCGGAGAATAGCGGCAGCAGCACGTCCAGTGGC
GGCAGCGGCAACTATGGAACCATAGGACGAAGCTCTAATGGCATGGCCTC
CATGATGGACGAGATGGCCAAGACGCTGGCACGACGACGCGCCCAAGCAG
AAAAGAAGGATCCCGATCCTGAAGCCGAAGTGAAAAAACGCCCCTGGGAA
AAGTCCAATACACTGCCCCATAAGCTAAGCGGCGGAGCTGGCAGCGGATC
TGCTGGAAGTGGCCATGAAGGAGCGAATGGTAACTCGGGCGGTGCTGGTA
GCAACACAACGAACAGTGGCGGCGAGTCCCCGCGACCCATGCGCAAACGA
TTCGGTAGTGCCAGCGAAGAGACCATTCTCAAGGTCAATGGCGATGGCCT
GTCGCTGGCGCTTTCCAATGGCGACTTGGACACACTGAAGGCTGAGATTG
TGCGCGAAATGCGATTGGAGATTCAGAAAGTCAAGAACGAGATAATAGAT
GCTATCAAATCGGAGTTTAATCGCAGAGCAAGCTTTCTAGACCAT

BO17806.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
ena-RD 2064 CG15112-PD 1..2061 17..2077 10305 100 Plus
ena-RB 2505 CG15112-PB 441..2502 22..2077 10150 99.7 Plus
ena-RE 2055 CG15112-PE 1..2052 17..2077 10025 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
ena-RD 2878 CG15112-RD 406..2466 17..2077 10305 100 Plus
ena-RB 3669 CG15112-RB 695..2756 22..2077 10150 99.7 Plus
ena-RE 3446 CG15112-RE 482..2533 17..2077 10025 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19160177..19160904 827..1554 3640 100 Plus
2R 25286936 2R 19158734..19159057 22..345 1620 100 Plus
2R 25286936 2R 19159781..19160035 575..829 1275 100 Plus
2R 25286936 2R 19159120..19159353 344..577 1170 100 Plus
2R 25286936 2R 19161194..19161417 1712..1935 1120 100 Plus
2R 25286936 2R 19160972..19161132 1551..1711 805 100 Plus
2R 25286936 2R 19161474..19161593 1932..2051 600 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:46:16 has no hits.

BO17806.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:14 Download gff for BO17806.complete
Subject Subject Range Query Range Percent Splice Strand
ena-RD 1..2064 17..2078 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:43 Download gff for BO17806.complete
Subject Subject Range Query Range Percent Splice Strand
ena-RD 393..2453 17..2077 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:33 Download gff for BO17806.complete
Subject Subject Range Query Range Percent Splice Strand
ena-RD 406..2466 17..2079 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:14 Download gff for BO17806.complete
Subject Subject Range Query Range Percent Splice Strand
ena-RD 393..2453 17..2077 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:53 Download gff for BO17806.complete
Subject Subject Range Query Range Percent Splice Strand
ena-RD 406..2466 17..2079 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:53 Download gff for BO17806.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19158728..19159055 17..343 99 -> Plus
2R 19159120..19159352 344..576 100 -> Plus
2R 19159783..19160035 577..829 100 -> Plus
2R 19160180..19160902 830..1552 100 -> Plus
2R 19160974..19161132 1553..1711 100 -> Plus
2R 19161194..19161415 1712..1933 100 -> Plus
2R 19161476..19161593 1934..2051 100 -> Plus
2R 19161660..19161685 2052..2079 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:33 Download gff for BO17806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15046233..15046560 17..343 99 -> Plus
arm_2R 15046625..15046857 344..576 100 -> Plus
arm_2R 15047288..15047540 577..829 100 -> Plus
arm_2R 15047685..15048407 830..1552 100 -> Plus
arm_2R 15048479..15048637 1553..1711 100 -> Plus
arm_2R 15048699..15048920 1712..1933 100 -> Plus
arm_2R 15048981..15049098 1934..2051 100 -> Plus
arm_2R 15049165..15049190 2052..2079 92   Plus

BO17806.pep Sequence

Translation from 16 to 2095

> BO17806.pep
MTEQSIIGARASVMVYDDNQKKWVPSGSSSGLSKVQIYHHQQNNTFRVVG
RKLQDHEVVINCSILKGLKYNQATATFHQWRDSKFVYGLNFSSQNDAENF
ARAMMHALEVLSGRVANNPGGPPTNGNGYEEDMGYRTMTSEDAAILRQNN
SIGGHVTPSAQTPTSQTNQNNIPQSPPTPQGHHRTSRNSLSAPPAPQPQQ
QQQQQQAQQMGQPGSHYGPTGNGPTSNGLPQQVNSQIPPAPQQQPQQQQF
QQQQQQQQYQQMVQAGYAPSQYQQPHYVLSNSNPNLTVHQYPTQQAQQQP
PQAPQPPLQNGGMYMVGHGHLPSSASANSVVYASQQQMLPQAHPQAPQAP
TMPGPGYGGPPVPPPQQQAENPYGQVPMPPPMNPSQQQQPGQVPLNRMSS
QGGPGGPPAPAPPPPPPSFGGAAGGGPPPPAPPQMFNGAPPPPAMGGGPP
PAPPAPPAMGGGPPPAPGGPGAPPPPPPPPGLGGAPKKEDPQADLMGSLA
SQLQQIKLKKNKVTTSAPENSGSSTSSGGSGNYGTIGRSSNGMASMMDEM
AKTLARRRAQAEKKDPDPEAEVKKRPWEKSNTLPHKLSGGAGSGSAGSGH
EGANGNSGGAGSNTTNSGGESPRPMRKRFGSASEETILKVNGDGLSLALS
NGDLDTLKAEIVREMRLEIQKVKNEIIDAIKSEFNRRASFLDH

BO17806.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
ena-PD 687 CG15112-PD 1..687 1..687 3694 100 Plus
ena-PB 834 CG15112-PB 146..834 1..687 3663 99.6 Plus
ena-PE 684 CG15112-PE 1..684 1..687 3648 99.3 Plus
ena-PC 684 CG15112-PC 1..684 1..687 3648 99.3 Plus
ena-PA 684 CG15112-PA 1..684 1..687 3648 99.3 Plus