Clone Sequence Records
BO17806.3prime Sequence
720 bp (644 high quality bases) assembled on 2006-10-13
> BO17806.3prime
ATGGTCTAGAAAGCTTGCTCTGCGATTAAACTCCGATTTGATAGCATCTA
TTATCTCGTTCTTGACTTTCTGAATCTCCAATCGCATTTCGCGCACAATC
TCAGCCTTCAGTGTGTCCAAGTCGCCATTGGAAAGCGCCAGCGACAGGCC
ATCGCCATTGACCTTGAGAATGGTCTCTTCGCTGGCACTACCGAATCGTT
TGCGCATGGGTCGCGGGGACTCGCCGCCACTGTTCGTTGTGTTGCTACCA
GCACCGCCCGAGTTACCATTCGCTCCTTCATGGCCACTTCCAGCAGATCC
GCTGCCAGCTCCGCCGCTTAGCTTATGGGGCAGTGTATTGGACTTTTCCC
AGGGGCGTTTTTTCACTTCGGCTTCAGGATCGGGATCCTTCTTTTCTGCT
TGGGCGCGTCGTCGTGCCAGCGTCTTGGCCATCTCGTCCATCATGGAGGC
CATGCCATTAGAGCTTCGTCCTATGGTTCCATAGTTGCCGCTGCCGCCAC
TGGACGTGCTGCTGCCGCTATTCTCCGGAGCAGAGGTGGTGACCTTATTC
TTTTTGAGCTTGATCTGCTGCAGCTGGGAGGCCAGCGAGCCCATGAGATC
TGCCTGGGGATCTTCCTTCTTAGGCGCTCCTCCCAATCCCGGCGGCGGAG
GCGGTGGTGGTGGTGCCCCTGGTCCGCCCGGTGCTGGCGGTGGTCCGCCA
CCCATTGCTGGCGGTGCCGG
BO17806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15112-PB | 2490 | ena-RB | 1786..2487 | 720..19 | 3510 | 100 | Minus |
CG15112-PA | 2055 | ena-RA | 1351..2052 | 720..19 | 3510 | 100 | Minus |
CG15112-PC | 2055 | ena-RC | 1351..2052 | 720..19 | 3510 | 100 | Minus |
CG15112-PD | 2064 | ena-RD | 1360..2061 | 720..19 | 3510 | 100 | Minus |
CG15112-PE | 2055 | ena-RE | 1351..2052 | 720..19 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ena-RG | 4417 | CG15112-RG | 1696..2397 | 720..19 | 3510 | 100 | Minus |
ena-RF | 4107 | CG15112-RF | 2493..3194 | 720..19 | 3510 | 100 | Minus |
ena-RE | 3446 | CG15112-RE | 1832..2533 | 720..19 | 3510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19161194..19161417 | 384..161 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 19160726..19160904 | 720..542 | 895 | 100 | Minus |
2R | 25286936 | 2R | 19160972..19161132 | 545..385 | 805 | 100 | Minus |
2R | 25286936 | 2R | 19161474..19161593 | 164..45 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:02:02 has no hits.
BO17806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:28 Download gff for
BO17806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15112-PE | 1351..2055 | 18..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:47:01 Download gff for
BO17806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RE | 1832..2533 | 19..720 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:38 Download gff for
BO17806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RE | 1832..2533 | 19..720 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:38 Download gff for
BO17806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19160726..19160902 | 544..720 | 100 | -> | Minus |
2R | 19160974..19161132 | 385..543 | 100 | -> | Minus |
2R | 19161194..19161415 | 163..384 | 100 | -> | Minus |
2R | 19161476..19161593 | 45..162 | 100 | -> | Minus |
2R | 19161660..19161685 | 19..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:47:01 Download gff for
BO17806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15048231..15048407 | 544..720 | 100 | -> | Minus |
arm_2R | 15048479..15048637 | 385..543 | 100 | -> | Minus |
arm_2R | 15048699..15048920 | 163..384 | 100 | -> | Minus |
arm_2R | 15048981..15049098 | 45..162 | 100 | -> | Minus |
arm_2R | 15049165..15049190 | 19..44 | 100 | | Minus |
BO17806.5prime Sequence
702 bp (701 high quality bases) assembled on 2006-10-13
> BO17806.5prime
GAAGTTATCAGTCGACATGACTGAGCAGAGTATTATCGGGGCGCGGGCCT
CTGTGATGGTGTACGATGACAACCAGAAGAAGTGGGTGCCATCGGGCAGC
TCGTCGGGATTGAGCAAGGTGCAGATCTACCACCACCAGCAGAACAACAC
GTTCCGTGTGGTGGGACGAAAGCTGCAGGATCACGAGGTGGTCATCAACT
GCTCCATTCTGAAGGGACTGAAGTACAATCAGGCCACGGCAACATTTCAT
CAGTGGCGCGATTCGAAATTCGTTTACGGCTTGAACTTCTCGAGCCAAAA
TGATGCGGAGAACTTTGCTAGGGCCATGATGCATGCCCTGGAAGTGCTCA
GTGGTCGCGTGGCGAACAACCCAGGTGGACCGCCCACAAATGGCAATGGC
TATGAGGAGGACATGGGCTATCGCACGATGACCAGCGAGGATGCAGCCAT
ACTGCGTCAGAACAACAGCATAGGTGGGCACGTCACGCCCTCGGCCCAGA
CGCCCACCTCGCAGACCAACCAGAATAACATCCCCCAGAGCCCGCCGACG
CCCCAGGGTCATCATCGCACCAGCAGGAATTCCCTCAGCGCCCCACCGGC
ACCACAGCCCCAACAGCAGCAGCAGCAGCAGCAGGCGCAGCAAATGGGTC
AGCCAGGATCCCACTATGGACCCACTGGAAATGGACCCACTTCGAATGGC
CT
BO17806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15112-PD | 2064 | ena-RD | 1..686 | 17..702 | 3430 | 100 | Plus |
CG15112-PA | 2055 | ena-RA | 1..560 | 17..576 | 2800 | 100 | Plus |
CG15112-PC | 2055 | ena-RC | 1..560 | 17..576 | 2800 | 100 | Plus |
CG15112-PE | 2055 | ena-RE | 1..560 | 17..576 | 2800 | 100 | Plus |
CG15112-PB | 2490 | ena-RB | 441..995 | 22..576 | 2775 | 100 | Plus |
CG15112-PA | 2055 | ena-RA | 558..674 | 586..702 | 585 | 100 | Plus |
CG15112-PC | 2055 | ena-RC | 558..674 | 586..702 | 585 | 100 | Plus |
CG15112-PE | 2055 | ena-RE | 558..674 | 586..702 | 585 | 100 | Plus |
CG15112-PB | 2490 | ena-RB | 993..1109 | 586..702 | 585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ena-RG | 4417 | CG15112-RG | 406..1091 | 17..702 | 3430 | 100 | Plus |
ena-RD | 2878 | CG15112-RD | 406..1091 | 17..702 | 3430 | 100 | Plus |
ena-RB | 3669 | CG15112-RB | 695..1375 | 22..702 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19158734..19159057 | 22..345 | 1620 | 100 | Plus |
2R | 25286936 | 2R | 19159120..19159353 | 344..577 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 19159781..19159908 | 575..702 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 01:31:15 has no hits.
BO17806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:29 Download gff for
BO17806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15112-PD | 1..686 | 17..702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:33 Download gff for
BO17806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 406..1091 | 17..702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:43 Download gff for
BO17806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 406..1091 | 17..702 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:43 Download gff for
BO17806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19158734..19159055 | 22..343 | 100 | -> | Plus |
2R | 19159120..19159352 | 344..576 | 100 | -> | Plus |
2R | 19159783..19159908 | 577..702 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:33 Download gff for
BO17806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15047288..15047413 | 577..702 | 100 | | Plus |
arm_2R | 15046239..15046560 | 22..343 | 100 | -> | Plus |
arm_2R | 15046625..15046857 | 344..576 | 100 | -> | Plus |
BO17806.complete Sequence
2095 bp assembled on 2007-03-23
GenBank Submission: FJ634223
> BO17806.complete
GAAGTTATCAGTCGACATGACTGAGCAGAGTATTATCGGGGCGCGGGCCT
CTGTGATGGTGTACGATGACAACCAGAAGAAGTGGGTGCCATCGGGCAGC
TCGTCGGGATTGAGCAAGGTGCAGATCTACCACCACCAGCAGAACAACAC
GTTCCGTGTGGTGGGACGAAAGCTGCAGGATCACGAGGTGGTCATCAACT
GCTCCATTCTGAAGGGACTGAAGTACAATCAGGCCACGGCAACATTTCAT
CAGTGGCGCGATTCGAAATTCGTTTACGGCTTGAACTTCTCGAGCCAAAA
TGATGCGGAGAACTTTGCTAGGGCCATGATGCATGCCCTGGAAGTGCTCA
GTGGTCGCGTGGCGAACAACCCAGGTGGACCGCCCACAAATGGCAATGGC
TATGAGGAGGACATGGGCTATCGCACGATGACCAGCGAGGATGCAGCCAT
ACTGCGTCAGAACAACAGCATAGGTGGGCACGTCACGCCCTCGGCCCAGA
CGCCCACCTCGCAGACCAACCAGAATAACATCCCCCAGAGCCCGCCGACG
CCCCAGGGTCATCATCGCACCAGCAGGAATTCCCTCAGCGCCCCACCGGC
ACCACAGCCCCAACAGCAGCAGCAGCAGCAGCAGGCGCAGCAAATGGGTC
AGCCAGGATCCCACTATGGACCCACTGGAAATGGACCCACTTCGAATGGC
CTGCCACAGCAGGTGAACTCACAGATTCCGCCGGCACCGCAGCAGCAGCC
ACAACAGCAACAGTTTCAGCAGCAGCAGCAGCAACAGCAATATCAGCAAA
TGGTCCAGGCGGGCTATGCGCCCTCTCAGTATCAGCAACCCCACTACGTG
CTCTCCAATTCTAATCCCAATCTAACTGTGCACCAATACCCGACACAGCA
GGCGCAGCAGCAGCCACCGCAAGCGCCACAGCCGCCGCTCCAGAACGGTG
GAATGTACATGGTGGGTCATGGTCATCTACCGAGCTCCGCGAGCGCCAAC
AGTGTTGTGTACGCCAGCCAGCAGCAGATGCTCCCGCAGGCGCATCCACA
GGCACCTCAGGCGCCGACGATGCCAGGTCCGGGCTACGGTGGTCCACCAG
TACCTCCGCCCCAGCAGCAGGCAGAGAATCCGTACGGTCAGGTACCCATG
CCGCCGCCAATGAATCCGTCACAGCAACAGCAGCCAGGTCAGGTGCCTCT
AAACCGGATGAGCAGCCAGGGTGGTCCAGGTGGCCCACCGGCTCCTGCTC
CGCCCCCGCCACCACCCAGTTTTGGTGGAGCTGCTGGAGGAGGACCACCA
CCACCAGCCCCGCCACAGATGTTCAACGGCGCACCGCCGCCGCCAGCCAT
GGGCGGTGGACCACCGCCGGCTCCACCGGCACCGCCAGCAATGGGTGGCG
GACCACCGCCAGCACCGGGCGGACCAGGGGCACCACCACCACCGCCTCCG
CCGCCGGGATTGGGAGGAGCGCCTAAGAAGGAAGATCCCCAGGCAGATCT
CATGGGCTCGCTGGCCTCCCAGCTGCAGCAGATCAAGCTCAAAAAGAATA
AGGTCACCACCTCTGCTCCGGAGAATAGCGGCAGCAGCACGTCCAGTGGC
GGCAGCGGCAACTATGGAACCATAGGACGAAGCTCTAATGGCATGGCCTC
CATGATGGACGAGATGGCCAAGACGCTGGCACGACGACGCGCCCAAGCAG
AAAAGAAGGATCCCGATCCTGAAGCCGAAGTGAAAAAACGCCCCTGGGAA
AAGTCCAATACACTGCCCCATAAGCTAAGCGGCGGAGCTGGCAGCGGATC
TGCTGGAAGTGGCCATGAAGGAGCGAATGGTAACTCGGGCGGTGCTGGTA
GCAACACAACGAACAGTGGCGGCGAGTCCCCGCGACCCATGCGCAAACGA
TTCGGTAGTGCCAGCGAAGAGACCATTCTCAAGGTCAATGGCGATGGCCT
GTCGCTGGCGCTTTCCAATGGCGACTTGGACACACTGAAGGCTGAGATTG
TGCGCGAAATGCGATTGGAGATTCAGAAAGTCAAGAACGAGATAATAGAT
GCTATCAAATCGGAGTTTAATCGCAGAGCAAGCTTTCTAGACCAT
BO17806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ena-RD | 2064 | CG15112-PD | 1..2061 | 17..2077 | 10305 | 100 | Plus |
ena-RB | 2505 | CG15112-PB | 441..2502 | 22..2077 | 10150 | 99.7 | Plus |
ena-RE | 2055 | CG15112-PE | 1..2052 | 17..2077 | 10025 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ena-RD | 2878 | CG15112-RD | 406..2466 | 17..2077 | 10305 | 100 | Plus |
ena-RB | 3669 | CG15112-RB | 695..2756 | 22..2077 | 10150 | 99.7 | Plus |
ena-RE | 3446 | CG15112-RE | 482..2533 | 17..2077 | 10025 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19160177..19160904 | 827..1554 | 3640 | 100 | Plus |
2R | 25286936 | 2R | 19158734..19159057 | 22..345 | 1620 | 100 | Plus |
2R | 25286936 | 2R | 19159781..19160035 | 575..829 | 1275 | 100 | Plus |
2R | 25286936 | 2R | 19159120..19159353 | 344..577 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 19161194..19161417 | 1712..1935 | 1120 | 100 | Plus |
2R | 25286936 | 2R | 19160972..19161132 | 1551..1711 | 805 | 100 | Plus |
2R | 25286936 | 2R | 19161474..19161593 | 1932..2051 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:46:16 has no hits.
BO17806.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:14 Download gff for
BO17806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 1..2064 | 17..2078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:43 Download gff for
BO17806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 393..2453 | 17..2077 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:33 Download gff for
BO17806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 406..2466 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:14 Download gff for
BO17806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 393..2453 | 17..2077 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:53 Download gff for
BO17806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 406..2466 | 17..2079 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:53 Download gff for
BO17806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19158728..19159055 | 17..343 | 99 | -> | Plus |
2R | 19159120..19159352 | 344..576 | 100 | -> | Plus |
2R | 19159783..19160035 | 577..829 | 100 | -> | Plus |
2R | 19160180..19160902 | 830..1552 | 100 | -> | Plus |
2R | 19160974..19161132 | 1553..1711 | 100 | -> | Plus |
2R | 19161194..19161415 | 1712..1933 | 100 | -> | Plus |
2R | 19161476..19161593 | 1934..2051 | 100 | -> | Plus |
2R | 19161660..19161685 | 2052..2079 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:33 Download gff for
BO17806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15046233..15046560 | 17..343 | 99 | -> | Plus |
arm_2R | 15046625..15046857 | 344..576 | 100 | -> | Plus |
arm_2R | 15047288..15047540 | 577..829 | 100 | -> | Plus |
arm_2R | 15047685..15048407 | 830..1552 | 100 | -> | Plus |
arm_2R | 15048479..15048637 | 1553..1711 | 100 | -> | Plus |
arm_2R | 15048699..15048920 | 1712..1933 | 100 | -> | Plus |
arm_2R | 15048981..15049098 | 1934..2051 | 100 | -> | Plus |
arm_2R | 15049165..15049190 | 2052..2079 | 92 | | Plus |
BO17806.pep Sequence
Translation from 16 to 2095
> BO17806.pep
MTEQSIIGARASVMVYDDNQKKWVPSGSSSGLSKVQIYHHQQNNTFRVVG
RKLQDHEVVINCSILKGLKYNQATATFHQWRDSKFVYGLNFSSQNDAENF
ARAMMHALEVLSGRVANNPGGPPTNGNGYEEDMGYRTMTSEDAAILRQNN
SIGGHVTPSAQTPTSQTNQNNIPQSPPTPQGHHRTSRNSLSAPPAPQPQQ
QQQQQQAQQMGQPGSHYGPTGNGPTSNGLPQQVNSQIPPAPQQQPQQQQF
QQQQQQQQYQQMVQAGYAPSQYQQPHYVLSNSNPNLTVHQYPTQQAQQQP
PQAPQPPLQNGGMYMVGHGHLPSSASANSVVYASQQQMLPQAHPQAPQAP
TMPGPGYGGPPVPPPQQQAENPYGQVPMPPPMNPSQQQQPGQVPLNRMSS
QGGPGGPPAPAPPPPPPSFGGAAGGGPPPPAPPQMFNGAPPPPAMGGGPP
PAPPAPPAMGGGPPPAPGGPGAPPPPPPPPGLGGAPKKEDPQADLMGSLA
SQLQQIKLKKNKVTTSAPENSGSSTSSGGSGNYGTIGRSSNGMASMMDEM
AKTLARRRAQAEKKDPDPEAEVKKRPWEKSNTLPHKLSGGAGSGSAGSGH
EGANGNSGGAGSNTTNSGGESPRPMRKRFGSASEETILKVNGDGLSLALS
NGDLDTLKAEIVREMRLEIQKVKNEIIDAIKSEFNRRASFLDH
BO17806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ena-PD | 687 | CG15112-PD | 1..687 | 1..687 | 3694 | 100 | Plus |
ena-PB | 834 | CG15112-PB | 146..834 | 1..687 | 3663 | 99.6 | Plus |
ena-PE | 684 | CG15112-PE | 1..684 | 1..687 | 3648 | 99.3 | Plus |
ena-PC | 684 | CG15112-PC | 1..684 | 1..687 | 3648 | 99.3 | Plus |
ena-PA | 684 | CG15112-PA | 1..684 | 1..687 | 3648 | 99.3 | Plus |