Clone BO17807 Report

Search the DGRC for BO17807

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptGlcAT-P-RB
Protein status:BO17807.pep: validated full length
Sequenced Size:982

Clone Sequence Records

BO17807.3prime Sequence

700 bp (664 high quality bases) assembled on 2006-10-13

> BO17807.3prime
ATGGTCTAGAAAGCTTGCTGGCCGCACCAGTAGCCTATCTATGTGCTCCA
GGTTCGTGTTCTTGTAGCGCGTCCTGTTCAGCGCCTGAGCGGGTGCGTTC
TTCTTCGTCTGCGTGTGCCACGTGAGAATATCTCTGCACTCGTCCGCCAG
CAACTCGATTTCCGCATCGTCAAGTGGTGCCAAACTGCGGAGAAACCCAT
CCTCCTCGTATCCCGGCTTGAAGGGCATCTGGGCATTGGGACGCTCCTTC
AAGAACTTGACGCTCACTGCAAATCCAGCCATGTCCACTGGATACTTGCG
TCCTCCGATCCAGCCATCGTAGTAGCCAACCAGCTTGCCCGCCTGAATAA
TGGGACTGCTCACTCCGGTCTTTGTGACCAGGCCCACTGGCCACATGGCC
ACCTTGCTGATGTAGCGCATCTGCTCGAATATGCTAATGTCGTAGGTGTT
GTCGTCGTCGGCAAAGTAGAGCACTCCCTCGGTGGCATGCTCGCGCAGAT
ACTCGAGGCCCCGATTCCGATTGGAGACGCCACGCGGCTTGGCCTTCTTC
GTCTGCTTGTACTTCTCCGGCATGGGCGCCACCATGTACTCGTAGGGCAC
TCCGATGCGGTCCAAAGTGTGGCCCACCAGCGGATTCGTCTTGTTGGCAT
CCTCGATGACCAGCCAGAGTAGATTCACCACATGTTTCAGCGTATATCCC

BO17807.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6207-PA 1440 GlcAT-P-RA 756..1437 700..19 3410 100 Minus
CG6207-PC 951 GlcAT-P-RC 267..948 700..19 3410 100 Minus
CG6207-PB 951 GlcAT-P-RB 267..948 700..19 3410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-RE 3161 CG6207-RE 1013..1694 700..19 3410 100 Minus
GlcAT-P-RD 3654 CG6207-RD 1506..2187 700..19 3410 100 Minus
GlcAT-P-RB 3427 CG6207-RB 1279..1960 700..19 3410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11178648..11178941 130..423 1470 100 Plus
3L 28110227 3L 11179224..11179382 421..579 795 100 Plus
3L 28110227 3L 11179530..11179651 579..700 610 100 Plus
3L 28110227 3L 11178421..11178531 19..129 555 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:02:51 has no hits.

BO17807.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:29 Download gff for BO17807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6207-PB 267..951 18..700 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:55 Download gff for BO17807.3prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RB 1279..1960 19..700 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:43 Download gff for BO17807.3prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RB 1279..1960 19..700 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:43 Download gff for BO17807.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11178421..11178531 19..129 100 <- Plus
3L 11178648..11178938 130..420 100 <- Plus
3L 11179224..11179381 421..578 100 <- Plus
3L 11179530..11179651 579..700 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:55 Download gff for BO17807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11171521..11171631 19..129 100 <- Plus
arm_3L 11171748..11172038 130..420 100 <- Plus
arm_3L 11172324..11172481 421..578 100 <- Plus
arm_3L 11172630..11172751 579..700 100   Plus

BO17807.5prime Sequence

776 bp (694 high quality bases) assembled on 2006-10-13

> BO17807.5prime
GAAGTTATCAGTCGACATGAAGGGCGGCAACTACACCAGCCTCGGCACGT
GCAGTGGCATCAATGTCAGTGGCAACGTGGCCGGCACCCGCAAGATGTCA
CTGGGCAAATCCATTAAAATGTACCTGACCATTTTCATCCTGACCACCTG
CATTTATATGGCGCTCTATCAGTACCACATATCCCGTGAACCCTTCGCCG
CCAGCGAGGTTGTCAAGCCGCCCCTGTACATAATCACGCCCACCTACCGA
CGACCCGAGCAGCTGGCGGAGCTCACCCGGCTGGGATATACGCTGAAACA
TGTGGTGAATCTACTCTGGCTGGTCATCGAGGATGCCAACAAGACGAATC
CGCTGGTGGGCCACACTTTGGACCGCATCGGAGTGCCCTACGAGTACATG
GTGGCGCCCATGCCGGAGAAGTACAAGCAGACGAAGAAGGCCAAGCCGCG
TGGCGTCTCCAATCGGAATCGGGGCCTCGAGTATCTGCGCGAGCATGCCA
CCGAGGGAGTGCTCTACTTTGCCGACGACGACAACACCTACGACATTAGC
ATATTCGAGCAGATGCGCTACATCAGCAAGGTGGCCATGTGGCCAGTGGG
CCTGGTCACAAAGACCGGAGTGAGCAGTCCCATTATTCAGGCGGGCAAGC
TGGTTGGCTACTACGATGGCTGGATCGGAGGACGCAAGTATCCAGTGGAC
ATGGCTGGATTTGCAGTGAGCGTCAAGTTCTTGAAGGAGCGTCCCAATGC
CCAGATGCCCTTCAAGCCGGGATACA

BO17807.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6207-PC 951 GlcAT-P-RC 1..759 17..775 3795 100 Plus
CG6207-PB 951 GlcAT-P-RB 1..759 17..775 3795 100 Plus
CG6207-PA 1440 GlcAT-P-RA 691..1248 218..775 2790 100 Plus
CG6207-PA 1440 GlcAT-P-RA 1..202 17..218 1010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-RE 3161 CG6207-RE 747..1505 17..775 3795 100 Plus
GlcAT-P-RB 3427 CG6207-RB 1013..1771 17..775 3795 100 Plus
GlcAT-P-RC 3266 CG6207-RC 852..1610 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11178726..11178941 775..560 1080 100 Minus
3L 28110227 3L 11183634..11183834 217..17 1005 100 Minus
3L 28110227 3L 11179530..11179718 404..216 945 100 Minus
3L 28110227 3L 11179224..11179382 562..404 795 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:52:59 has no hits.

BO17807.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:30 Download gff for BO17807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6207-PB 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:13 Download gff for BO17807.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 852..1610 17..775 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:58 Download gff for BO17807.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 852..1610 17..775 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:58 Download gff for BO17807.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11178726..11178938 563..775 100 <- Minus
3L 11179224..11179381 405..562 100 <- Minus
3L 11179530..11179716 218..404 100 <- Minus
3L 11183634..11183834 17..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:13 Download gff for BO17807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11171826..11172038 563..775 100 <- Minus
arm_3L 11172324..11172481 405..562 100 <- Minus
arm_3L 11172630..11172816 218..404 100 <- Minus
arm_3L 11176734..11176934 17..217 100   Minus

BO17807.complete Sequence

982 bp assembled on 2006-10-11

GenBank Submission: FJ634224

> BO17807.complete
GAAGTTATCAGTCGACATGAAGGGCGGCAACTACACCAGCCTCGGCACGT
GCAGTGGCATCAATGTCAGTGGCAACGTGGCCGGCACCCGCAAGATGTCA
CTGGGCAAATCCATTAAAATGTACCTGACCATTTTCATCCTGACCACCTG
CATTTATATGGCGCTCTATCAGTACCACATATCCCGTGAACCCTTCGCCG
CCAGCGAGGTTGTCAAGCCGCCCCTGTACATAATCACGCCCACCTACCGA
CGACCCGAGCAGCTGGCGGAGCTCACCCGGCTGGGATATACGCTGAAACA
TGTGGTGAATCTACTCTGGCTGGTCATCGAGGATGCCAACAAGACGAATC
CGCTGGTGGGCCACACTTTGGACCGCATCGGAGTGCCCTACGAGTACATG
GTGGCGCCCATGCCGGAGAAGTACAAGCAGACGAAGAAGGCCAAGCCGCG
TGGCGTCTCCAATCGGAATCGGGGCCTCGAGTATCTGCGCGAGCATGCCA
CCGAGGGAGTGCTCTACTTTGCCGACGACGACAACACCTACGACATTAGC
ATATTCGAGCAGATGCGCTACATCAGCAAGGTGGCCATGTGGCCAGTGGG
CCTGGTCACAAAGACCGGAGTGAGCAGTCCCATTATTCAGGCGGGCAAGC
TGGTTGGCTACTACGATGGCTGGATCGGAGGACGCAAGTATCCAGTGGAC
ATGGCTGGATTTGCAGTGAGCGTCAAGTTCTTGAAGGAGCGTCCCAATGC
CCAGATGCCCTTCAAGCCGGGATACGAGGAGGATGGGTTTCTCCGCAGTT
TGGCACCACTTGACGATGCGGAAATCGAGTTGCTGGCGGACGAGTGCAGA
GATATTCTCACGTGGCACACGCAGACGAAGAAGAACGCACCCGCTCAGGC
GCTGAACAGGACGCGCTACAAGAACACGAACCTGGAGCACATAGATAGGC
TACTGGTGCGGCCAGCAAGCTTTCTAGACCAT

BO17807.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-RE 951 CG6207-PE 1..948 17..964 4740 100 Plus
GlcAT-P-RB 951 CG6207-PB 1..948 17..964 4740 100 Plus
GlcAT-P-RC 951 CG6207-PC 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-RE 3161 CG6207-RE 747..1694 17..964 4740 100 Plus
GlcAT-P-RB 3427 CG6207-RB 1013..1960 17..964 4740 100 Plus
GlcAT-P-RC 3266 CG6207-RC 852..1799 17..964 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11178648..11178941 853..560 1470 100 Minus
3L 28110227 3L 11183634..11183834 217..17 1005 100 Minus
3L 28110227 3L 11179530..11179718 404..216 945 100 Minus
3L 28110227 3L 11179224..11179382 562..404 795 100 Minus
3L 28110227 3L 11178421..11178531 964..854 555 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:33:54 has no hits.

BO17807.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:43 Download gff for BO17807.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RB 1..951 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:22 Download gff for BO17807.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RB 980..1927 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:00 Download gff for BO17807.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 852..1799 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:43 Download gff for BO17807.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RB 980..1927 17..964 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:57 Download gff for BO17807.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-P-RC 852..1799 17..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:57 Download gff for BO17807.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11178419..11178531 854..966 98 <- Minus
3L 11178648..11178938 563..853 100 <- Minus
3L 11179224..11179381 405..562 100 <- Minus
3L 11179530..11179716 218..404 100 <- Minus
3L 11183634..11183834 17..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:00 Download gff for BO17807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11171519..11171631 854..966 98 <- Minus
arm_3L 11171748..11172038 563..853 100 <- Minus
arm_3L 11172324..11172481 405..562 100 <- Minus
arm_3L 11172630..11172816 218..404 100 <- Minus
arm_3L 11176734..11176934 17..217 100   Minus

BO17807.pep Sequence

Translation from 16 to 982

> BO17807.pep
MKGGNYTSLGTCSGINVSGNVAGTRKMSLGKSIKMYLTIFILTTCIYMAL
YQYHISREPFAASEVVKPPLYIITPTYRRPEQLAELTRLGYTLKHVVNLL
WLVIEDANKTNPLVGHTLDRIGVPYEYMVAPMPEKYKQTKKAKPRGVSNR
NRGLEYLREHATEGVLYFADDDNTYDISIFEQMRYISKVAMWPVGLVTKT
GVSSPIIQAGKLVGYYDGWIGGRKYPVDMAGFAVSVKFLKERPNAQMPFK
PGYEEDGFLRSLAPLDDAEIELLADECRDILTWHTQTKKNAPAQALNRTR
YKNTNLEHIDRLLVRPASFLDH

BO17807.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-P-PE 316 CG6207-PE 1..316 1..316 1665 100 Plus
GlcAT-P-PB 316 CG6207-PB 1..316 1..316 1665 100 Plus
GlcAT-P-PC 316 CG6207-PC 1..316 1..316 1665 100 Plus
GlcAT-P-PD 479 CG6207-PD 176..479 7..316 1325 84.5 Plus
GlcAT-P-PA 479 CG6207-PA 176..479 7..316 1325 84.5 Plus
GlcAT-P-PD 479 CG6207-PD 1..67 1..67 344 100 Plus