Clone Sequence Records
BO17807.3prime Sequence
700 bp (664 high quality bases) assembled on 2006-10-13
> BO17807.3prime
ATGGTCTAGAAAGCTTGCTGGCCGCACCAGTAGCCTATCTATGTGCTCCA
GGTTCGTGTTCTTGTAGCGCGTCCTGTTCAGCGCCTGAGCGGGTGCGTTC
TTCTTCGTCTGCGTGTGCCACGTGAGAATATCTCTGCACTCGTCCGCCAG
CAACTCGATTTCCGCATCGTCAAGTGGTGCCAAACTGCGGAGAAACCCAT
CCTCCTCGTATCCCGGCTTGAAGGGCATCTGGGCATTGGGACGCTCCTTC
AAGAACTTGACGCTCACTGCAAATCCAGCCATGTCCACTGGATACTTGCG
TCCTCCGATCCAGCCATCGTAGTAGCCAACCAGCTTGCCCGCCTGAATAA
TGGGACTGCTCACTCCGGTCTTTGTGACCAGGCCCACTGGCCACATGGCC
ACCTTGCTGATGTAGCGCATCTGCTCGAATATGCTAATGTCGTAGGTGTT
GTCGTCGTCGGCAAAGTAGAGCACTCCCTCGGTGGCATGCTCGCGCAGAT
ACTCGAGGCCCCGATTCCGATTGGAGACGCCACGCGGCTTGGCCTTCTTC
GTCTGCTTGTACTTCTCCGGCATGGGCGCCACCATGTACTCGTAGGGCAC
TCCGATGCGGTCCAAAGTGTGGCCCACCAGCGGATTCGTCTTGTTGGCAT
CCTCGATGACCAGCCAGAGTAGATTCACCACATGTTTCAGCGTATATCCC
BO17807.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6207-PA | 1440 | GlcAT-P-RA | 756..1437 | 700..19 | 3410 | 100 | Minus |
CG6207-PC | 951 | GlcAT-P-RC | 267..948 | 700..19 | 3410 | 100 | Minus |
CG6207-PB | 951 | GlcAT-P-RB | 267..948 | 700..19 | 3410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-RE | 3161 | CG6207-RE | 1013..1694 | 700..19 | 3410 | 100 | Minus |
GlcAT-P-RD | 3654 | CG6207-RD | 1506..2187 | 700..19 | 3410 | 100 | Minus |
GlcAT-P-RB | 3427 | CG6207-RB | 1279..1960 | 700..19 | 3410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11178648..11178941 | 130..423 | 1470 | 100 | Plus |
3L | 28110227 | 3L | 11179224..11179382 | 421..579 | 795 | 100 | Plus |
3L | 28110227 | 3L | 11179530..11179651 | 579..700 | 610 | 100 | Plus |
3L | 28110227 | 3L | 11178421..11178531 | 19..129 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:02:51 has no hits.
BO17807.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:29 Download gff for
BO17807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6207-PB | 267..951 | 18..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:55 Download gff for
BO17807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RB | 1279..1960 | 19..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:43 Download gff for
BO17807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RB | 1279..1960 | 19..700 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:43 Download gff for
BO17807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11178421..11178531 | 19..129 | 100 | <- | Plus |
3L | 11178648..11178938 | 130..420 | 100 | <- | Plus |
3L | 11179224..11179381 | 421..578 | 100 | <- | Plus |
3L | 11179530..11179651 | 579..700 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:55 Download gff for
BO17807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11171521..11171631 | 19..129 | 100 | <- | Plus |
arm_3L | 11171748..11172038 | 130..420 | 100 | <- | Plus |
arm_3L | 11172324..11172481 | 421..578 | 100 | <- | Plus |
arm_3L | 11172630..11172751 | 579..700 | 100 | | Plus |
BO17807.5prime Sequence
776 bp (694 high quality bases) assembled on 2006-10-13
> BO17807.5prime
GAAGTTATCAGTCGACATGAAGGGCGGCAACTACACCAGCCTCGGCACGT
GCAGTGGCATCAATGTCAGTGGCAACGTGGCCGGCACCCGCAAGATGTCA
CTGGGCAAATCCATTAAAATGTACCTGACCATTTTCATCCTGACCACCTG
CATTTATATGGCGCTCTATCAGTACCACATATCCCGTGAACCCTTCGCCG
CCAGCGAGGTTGTCAAGCCGCCCCTGTACATAATCACGCCCACCTACCGA
CGACCCGAGCAGCTGGCGGAGCTCACCCGGCTGGGATATACGCTGAAACA
TGTGGTGAATCTACTCTGGCTGGTCATCGAGGATGCCAACAAGACGAATC
CGCTGGTGGGCCACACTTTGGACCGCATCGGAGTGCCCTACGAGTACATG
GTGGCGCCCATGCCGGAGAAGTACAAGCAGACGAAGAAGGCCAAGCCGCG
TGGCGTCTCCAATCGGAATCGGGGCCTCGAGTATCTGCGCGAGCATGCCA
CCGAGGGAGTGCTCTACTTTGCCGACGACGACAACACCTACGACATTAGC
ATATTCGAGCAGATGCGCTACATCAGCAAGGTGGCCATGTGGCCAGTGGG
CCTGGTCACAAAGACCGGAGTGAGCAGTCCCATTATTCAGGCGGGCAAGC
TGGTTGGCTACTACGATGGCTGGATCGGAGGACGCAAGTATCCAGTGGAC
ATGGCTGGATTTGCAGTGAGCGTCAAGTTCTTGAAGGAGCGTCCCAATGC
CCAGATGCCCTTCAAGCCGGGATACA
BO17807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6207-PC | 951 | GlcAT-P-RC | 1..759 | 17..775 | 3795 | 100 | Plus |
CG6207-PB | 951 | GlcAT-P-RB | 1..759 | 17..775 | 3795 | 100 | Plus |
CG6207-PA | 1440 | GlcAT-P-RA | 691..1248 | 218..775 | 2790 | 100 | Plus |
CG6207-PA | 1440 | GlcAT-P-RA | 1..202 | 17..218 | 1010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-RE | 3161 | CG6207-RE | 747..1505 | 17..775 | 3795 | 100 | Plus |
GlcAT-P-RB | 3427 | CG6207-RB | 1013..1771 | 17..775 | 3795 | 100 | Plus |
GlcAT-P-RC | 3266 | CG6207-RC | 852..1610 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11178726..11178941 | 775..560 | 1080 | 100 | Minus |
3L | 28110227 | 3L | 11183634..11183834 | 217..17 | 1005 | 100 | Minus |
3L | 28110227 | 3L | 11179530..11179718 | 404..216 | 945 | 100 | Minus |
3L | 28110227 | 3L | 11179224..11179382 | 562..404 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:52:59 has no hits.
BO17807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:30 Download gff for
BO17807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6207-PB | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:13 Download gff for
BO17807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 852..1610 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:58 Download gff for
BO17807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 852..1610 | 17..775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:58 Download gff for
BO17807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11178726..11178938 | 563..775 | 100 | <- | Minus |
3L | 11179224..11179381 | 405..562 | 100 | <- | Minus |
3L | 11179530..11179716 | 218..404 | 100 | <- | Minus |
3L | 11183634..11183834 | 17..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:13 Download gff for
BO17807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11171826..11172038 | 563..775 | 100 | <- | Minus |
arm_3L | 11172324..11172481 | 405..562 | 100 | <- | Minus |
arm_3L | 11172630..11172816 | 218..404 | 100 | <- | Minus |
arm_3L | 11176734..11176934 | 17..217 | 100 | | Minus |
BO17807.complete Sequence
982 bp assembled on 2006-10-11
GenBank Submission: FJ634224
> BO17807.complete
GAAGTTATCAGTCGACATGAAGGGCGGCAACTACACCAGCCTCGGCACGT
GCAGTGGCATCAATGTCAGTGGCAACGTGGCCGGCACCCGCAAGATGTCA
CTGGGCAAATCCATTAAAATGTACCTGACCATTTTCATCCTGACCACCTG
CATTTATATGGCGCTCTATCAGTACCACATATCCCGTGAACCCTTCGCCG
CCAGCGAGGTTGTCAAGCCGCCCCTGTACATAATCACGCCCACCTACCGA
CGACCCGAGCAGCTGGCGGAGCTCACCCGGCTGGGATATACGCTGAAACA
TGTGGTGAATCTACTCTGGCTGGTCATCGAGGATGCCAACAAGACGAATC
CGCTGGTGGGCCACACTTTGGACCGCATCGGAGTGCCCTACGAGTACATG
GTGGCGCCCATGCCGGAGAAGTACAAGCAGACGAAGAAGGCCAAGCCGCG
TGGCGTCTCCAATCGGAATCGGGGCCTCGAGTATCTGCGCGAGCATGCCA
CCGAGGGAGTGCTCTACTTTGCCGACGACGACAACACCTACGACATTAGC
ATATTCGAGCAGATGCGCTACATCAGCAAGGTGGCCATGTGGCCAGTGGG
CCTGGTCACAAAGACCGGAGTGAGCAGTCCCATTATTCAGGCGGGCAAGC
TGGTTGGCTACTACGATGGCTGGATCGGAGGACGCAAGTATCCAGTGGAC
ATGGCTGGATTTGCAGTGAGCGTCAAGTTCTTGAAGGAGCGTCCCAATGC
CCAGATGCCCTTCAAGCCGGGATACGAGGAGGATGGGTTTCTCCGCAGTT
TGGCACCACTTGACGATGCGGAAATCGAGTTGCTGGCGGACGAGTGCAGA
GATATTCTCACGTGGCACACGCAGACGAAGAAGAACGCACCCGCTCAGGC
GCTGAACAGGACGCGCTACAAGAACACGAACCTGGAGCACATAGATAGGC
TACTGGTGCGGCCAGCAAGCTTTCTAGACCAT
BO17807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-RE | 951 | CG6207-PE | 1..948 | 17..964 | 4740 | 100 | Plus |
GlcAT-P-RB | 951 | CG6207-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
GlcAT-P-RC | 951 | CG6207-PC | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-RE | 3161 | CG6207-RE | 747..1694 | 17..964 | 4740 | 100 | Plus |
GlcAT-P-RB | 3427 | CG6207-RB | 1013..1960 | 17..964 | 4740 | 100 | Plus |
GlcAT-P-RC | 3266 | CG6207-RC | 852..1799 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11178648..11178941 | 853..560 | 1470 | 100 | Minus |
3L | 28110227 | 3L | 11183634..11183834 | 217..17 | 1005 | 100 | Minus |
3L | 28110227 | 3L | 11179530..11179718 | 404..216 | 945 | 100 | Minus |
3L | 28110227 | 3L | 11179224..11179382 | 562..404 | 795 | 100 | Minus |
3L | 28110227 | 3L | 11178421..11178531 | 964..854 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:33:54 has no hits.
BO17807.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:43 Download gff for
BO17807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RB | 1..951 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:22 Download gff for
BO17807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RB | 980..1927 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:00 Download gff for
BO17807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 852..1799 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:43 Download gff for
BO17807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RB | 980..1927 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:57 Download gff for
BO17807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-P-RC | 852..1799 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:57 Download gff for
BO17807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11178419..11178531 | 854..966 | 98 | <- | Minus |
3L | 11178648..11178938 | 563..853 | 100 | <- | Minus |
3L | 11179224..11179381 | 405..562 | 100 | <- | Minus |
3L | 11179530..11179716 | 218..404 | 100 | <- | Minus |
3L | 11183634..11183834 | 17..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:00 Download gff for
BO17807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11171519..11171631 | 854..966 | 98 | <- | Minus |
arm_3L | 11171748..11172038 | 563..853 | 100 | <- | Minus |
arm_3L | 11172324..11172481 | 405..562 | 100 | <- | Minus |
arm_3L | 11172630..11172816 | 218..404 | 100 | <- | Minus |
arm_3L | 11176734..11176934 | 17..217 | 100 | | Minus |
BO17807.pep Sequence
Translation from 16 to 982
> BO17807.pep
MKGGNYTSLGTCSGINVSGNVAGTRKMSLGKSIKMYLTIFILTTCIYMAL
YQYHISREPFAASEVVKPPLYIITPTYRRPEQLAELTRLGYTLKHVVNLL
WLVIEDANKTNPLVGHTLDRIGVPYEYMVAPMPEKYKQTKKAKPRGVSNR
NRGLEYLREHATEGVLYFADDDNTYDISIFEQMRYISKVAMWPVGLVTKT
GVSSPIIQAGKLVGYYDGWIGGRKYPVDMAGFAVSVKFLKERPNAQMPFK
PGYEEDGFLRSLAPLDDAEIELLADECRDILTWHTQTKKNAPAQALNRTR
YKNTNLEHIDRLLVRPASFLDH
BO17807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-P-PE | 316 | CG6207-PE | 1..316 | 1..316 | 1665 | 100 | Plus |
GlcAT-P-PB | 316 | CG6207-PB | 1..316 | 1..316 | 1665 | 100 | Plus |
GlcAT-P-PC | 316 | CG6207-PC | 1..316 | 1..316 | 1665 | 100 | Plus |
GlcAT-P-PD | 479 | CG6207-PD | 176..479 | 7..316 | 1325 | 84.5 | Plus |
GlcAT-P-PA | 479 | CG6207-PA | 176..479 | 7..316 | 1325 | 84.5 | Plus |
GlcAT-P-PD | 479 | CG6207-PD | 1..67 | 1..67 | 344 | 100 | Plus |