Clone Sequence Records
BO17810.5prime Sequence
299 bp (299 high quality bases) assembled on 2006-10-13
> BO17810.5prime
GAAGTTATCAGTCGACATGTCTGATCGCAAGGCCGTGATTAAAAATGCCG
ACATGAGCGAGGAGATGCAGCAGGATGCCGTCGATTGTGCGACACAGGCC
CTCGAGAAGTACAACATTGAAAAGGACATTGCGGCCTACATCAAGAAGGA
GTTCGACAAAAAATACAATCCCACATGGCATTGCATTGTCGGTCGCAACT
TTGGATCGTATGTCACACACGAGACGCGCCACTTTATTTACTTCTATTTG
GGCCAGGTGGCTATTTTACTGTTTAAGAGCGGTGCAAGCTTTCTAGACC
BO17810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6998-PB | 270 | ctp-RB | 1..267 | 17..283 | 1335 | 100 | Plus |
CG6998-PD | 270 | ctp-RD | 1..267 | 17..283 | 1335 | 100 | Plus |
CG6998-PA | 270 | ctp-RA | 1..267 | 17..283 | 1335 | 100 | Plus |
CG6998-PC | 270 | ctp-RC | 1..267 | 17..283 | 1335 | 100 | Plus |
CG5450-PA | 270 | Cdlc2-RA | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG5450-PB | 270 | Cdlc2-RB | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG5450-PA | 270 | Cdlc2-RA | 1..59 | 17..75 | 145 | 89.8 | Plus |
CG5450-PB | 270 | Cdlc2-RB | 1..59 | 17..75 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ctp-RE | 4061 | CG6998-RE | 216..482 | 17..283 | 1335 | 100 | Plus |
ctp-RC | 4416 | CG6998-RC | 571..837 | 17..283 | 1335 | 100 | Plus |
ctp-RA | 1483 | CG6998-RA | 216..482 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4698295..4698455 | 123..283 | 805 | 100 | Plus |
2L | 23513712 | 2L | 1344616..1344882 | 17..283 | 720 | 84.6 | Plus |
X | 23542271 | X | 4691737..4691845 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:37:45 has no hits.
BO17810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:33 Download gff for
BO17810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6998-PA | 1..270 | 17..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:20 Download gff for
BO17810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RA | 208..487 | 9..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:38 Download gff for
BO17810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RA | 208..487 | 9..288 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:38 Download gff for
BO17810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4691729..4691844 | 9..124 | 97 | -> | Plus |
X | 4698297..4698460 | 125..288 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:20 Download gff for
BO17810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4585762..4585877 | 9..124 | 97 | -> | Plus |
arm_X | 4592330..4592493 | 125..288 | 98 | | Plus |
BO17810.3prime Sequence
299 bp (299 high quality bases) assembled on 2006-10-13
> BO17810.3prime
ATGGTCTAGAAAGCTTGCACCGCTCTTAAACAGTAAAATAGCCACCTGGC
CCAAATAGAAGTAAATAAAGTGGCGCGTCTCGTGTGTGACATACGATCCA
AAGTTGCGACCGACAATGCAATGCCATGTGGGATTGTATTTTTTGTCGAA
CTCCTTCTTGATGTAGGCCGCAATGTCCTTTTCAATGTTGTACTTCTCGA
GGGCCTGTGTCGCACAATCGACGGCATCCTGCTGCATCTCCTCGCTCATG
TCGGCATTTTTAATCACGGCCTTGCGATCAGACATGTCGACTGATAACT
BO17810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6998-PB | 270 | ctp-RB | 1..267 | 285..19 | 1335 | 100 | Minus |
CG6998-PD | 270 | ctp-RD | 1..267 | 285..19 | 1335 | 100 | Minus |
CG6998-PA | 270 | ctp-RA | 1..267 | 285..19 | 1335 | 100 | Minus |
CG6998-PC | 270 | ctp-RC | 1..267 | 285..19 | 1335 | 100 | Minus |
CG5450-PA | 270 | Cdlc2-RA | 79..218 | 207..68 | 250 | 87.1 | Minus |
CG5450-PB | 270 | Cdlc2-RB | 79..218 | 207..68 | 250 | 87.1 | Minus |
CG5450-PA | 270 | Cdlc2-RA | 1..59 | 285..227 | 145 | 89.8 | Minus |
CG5450-PB | 270 | Cdlc2-RB | 1..59 | 285..227 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ctp-RE | 4061 | CG6998-RE | 216..482 | 285..19 | 1335 | 100 | Minus |
ctp-RC | 4416 | CG6998-RC | 571..837 | 285..19 | 1335 | 100 | Minus |
ctp-RA | 1483 | CG6998-RA | 216..482 | 285..19 | 1335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4698295..4698455 | 179..19 | 805 | 100 | Minus |
2L | 23513712 | 2L | 1344616..1344882 | 285..19 | 720 | 84.6 | Minus |
X | 23542271 | X | 4691737..4691845 | 285..177 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:53:19 has no hits.
BO17810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:32 Download gff for
BO17810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6998-PA | 1..270 | 15..285 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:17 Download gff for
BO17810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RA | 208..487 | 14..293 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:36 Download gff for
BO17810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RA | 208..487 | 14..293 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:36 Download gff for
BO17810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4691729..4691844 | 178..293 | 97 | -> | Minus |
X | 4698297..4698460 | 14..177 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:17 Download gff for
BO17810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4585762..4585877 | 178..293 | 97 | -> | Minus |
arm_X | 4592330..4592493 | 14..177 | 98 | | Minus |
BO17810.complete Sequence
301 bp assembled on 2006-10-11
GenBank Submission: FJ634225
> BO17810.complete
GAAGTTATCAGTCGACATGTCTGATCGCAAGGCCGTGATTAAAAATGCCG
ACATGAGCGAGGAGATGCAGCAGGATGCCGTCGATTGTGCGACACAGGCC
CTCGAGAAGTACAACATTGAAAAGGACATTGCGGCCTACATCAAGAAGGA
GTTCGACAAAAAATACAATCCCACATGGCATTGCATTGTCGGTCGCAACT
TTGGATCGTATGTCACACACGAGACGCGCCACTTTATTTACTTCTATTTG
GGCCAGGTGGCTATTTTACTGTTTAAGAGCGGTGCAAGCTTTCTAGACCA
T
BO17810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ctp-RE | 270 | CG6998-PE | 1..267 | 17..283 | 1335 | 100 | Plus |
ctp-RC | 270 | CG6998-PC | 1..267 | 17..283 | 1335 | 100 | Plus |
ctp-RA | 270 | CG6998-PA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ctp-RE | 4061 | CG6998-RE | 216..482 | 17..283 | 1335 | 100 | Plus |
ctp-RC | 4416 | CG6998-RC | 571..837 | 17..283 | 1335 | 100 | Plus |
ctp-RA | 1483 | CG6998-RA | 216..482 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4698295..4698455 | 123..283 | 805 | 100 | Plus |
2L | 23513712 | 2L | 1344616..1344882 | 17..283 | 720 | 84.6 | Plus |
X | 23542271 | X | 4691737..4691845 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:40:02 has no hits.
BO17810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:44 Download gff for
BO17810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RA | 1..270 | 17..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:15 Download gff for
BO17810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RB | 321..600 | 9..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:11 Download gff for
BO17810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RA | 216..482 | 17..285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:44 Download gff for
BO17810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RB | 321..600 | 9..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:12 Download gff for
BO17810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RA | 216..482 | 17..285 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:12 Download gff for
BO17810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4698297..4698455 | 125..285 | 98 | | Plus |
X | 4691737..4691844 | 17..124 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:11 Download gff for
BO17810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4585770..4585877 | 17..124 | 100 | -> | Plus |
arm_X | 4592330..4592488 | 125..285 | 98 | | Plus |
BO17810.pep Sequence
Translation from 16 to 301
> BO17810.pep
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKY
NPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSGASFLDH
BO17810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ctp-PE | 89 | CG6998-PE | 1..89 | 1..89 | 473 | 100 | Plus |
ctp-PC | 89 | CG6998-PC | 1..89 | 1..89 | 473 | 100 | Plus |
ctp-PA | 89 | CG6998-PA | 1..89 | 1..89 | 473 | 100 | Plus |
ctp-PB | 89 | CG6998-PB | 1..89 | 1..89 | 473 | 100 | Plus |
Cdlc2-PC | 89 | CG5450-PC | 1..89 | 1..89 | 469 | 98.9 | Plus |