Clone Sequence Records
BO17812.3prime Sequence
784 bp (700 high quality bases) assembled on 2006-10-13
> BO17812.3prime
ATGGTCTAGAAAGCTTGCGCACCAAGAGAAGAAAGGGCTCTTATTTTGGA
AGCGCTGCGTAAAAGAGAAGAAACGACTGCCACTTGATCGCTCGACAATC
ACCGCTGGCATCTGGACCAGTTGCACCGGCGACTTGCCATCCCTCAGTGC
CTGTGTGAGATTTAGAATCTGGCCCCGCATCACCGACATCTGGCGCTCGA
AGAGACGCTTGTCAAAGCCGCGATCCTGCTGGAAGAGGTACAACAACTCC
GTGCAGATCTCCTCTACAAAGTTCATATCTGACAACTGCGGCAGCACCTG
CTCCTTGATTTCTTCGCTAAACGGAATTTTCGCCTGTGGCAACCAGGCCC
AATGGTAGGGATAAGCTCGCCAAGAGTCCGGATGCTTGAAGGGAAAAGCG
AGACCATTGTCGATGGCAGCGATCCGAATGAAGGCCGAGTTCACCACATT
CCAATCGGGTTCCGACGTAGGGGGGGATCTCGACGAGGGTTCATCTTCGC
TGCTGGCCAAACTGCTGCTATCTTGCTGTGCACTTGTGGCTGCTCCACCC
GCTAGGTGGTTCGAAGGGCGACCACCAGTAGTCGGTTTCGGGCTAGCCTG
CGGCGGCTCGTTTAGGTCAACGATTTTTGAAGCCCCCAACGCATTGGGCA
ATTTGGGGGTCACAACTCCGTGCATAGTTCTGCCGCCAGTGCCTCCCACC
TGGGTCGTGATCTTAGGGGCCACGTACTTGATCAGCCAGTTGTCGTTGCC
ACGGTCCGTGTTGCGTATGATATAATCGAGCACG
BO17812.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2929-PB | 1692 | Pi4KIIalpha-RB | 924..1689 | 784..19 | 3830 | 100 | Minus |
| CG2929-PA | 2133 | Pi4KIIalpha-RA | 1365..2130 | 784..19 | 3830 | 100 | Minus |
| CG2929-PC | 2133 | Pi4KIIalpha-RC | 1365..2130 | 784..19 | 3830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 1692..2457 | 784..19 | 3830 | 100 | Minus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 1719..2484 | 784..19 | 3830 | 100 | Minus |
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 1162..1927 | 784..19 | 3830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5558499..5559194 | 89..784 | 3480 | 100 | Plus |
| 3R | 32079331 | 3R | 5558367..5558436 | 20..89 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:02:52 has no hits.
BO17812.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:35 Download gff for
BO17812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2929-PC | 1365..2133 | 15..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:06:49 Download gff for
BO17812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 1162..1930 | 15..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:32:44 Download gff for
BO17812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 1162..1930 | 15..784 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:32:44 Download gff for
BO17812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5558360..5558435 | 11..88 | 94 | <- | Plus |
| 3R | 5558499..5559194 | 89..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:06:49 Download gff for
BO17812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1384082..1384157 | 11..88 | 94 | <- | Plus |
| arm_3R | 1384221..1384916 | 89..784 | 100 | | Plus |
BO17812.5prime Sequence
862 bp (642 high quality bases) assembled on 2006-10-13
> BO17812.5prime
GAAGTTATCAGTCGACATGAGCGGCGCTCGGGATCAGACGGATCCCCCGC
TGCTCCAGCTCGAGGACGAGGTGGATCTCATCGGGGACTTTGCCAAGGAC
CAACCTCCGCCCAGAAACCAACTGTCTCCGCTTTTAAATGGCTTCGAGTC
GACAAGCAACCAGTTGACCACCAAAGTTGAGATCAACACCGTCGGCATGG
GCAAACGCAAGACAAGGAGAAGAGGGAAAAAGGCGCGGGAACCCATGCTA
CTGTCGGTGGACGACGAGGATGACGAGGAAGAGGCGCAAGAGGAGAGGAA
CCACACCAACGGGCTGCCGCCAGGCGAGGAGAGTGCCGGCGGCGATGCTG
TTATTCAGAAACCGCAACTGGATAACTTGGTCATGCATTACGACGACCAG
ATCGACGACGAAGATGGCGAAGAAGCTGTGCTGCTGAAGAGAAGCTCAAA
CCCGCGCAACCAAAGACTCAAAGGTAGCGCTGAGGATAGCATCGACAGCA
GCAGCCAACAGCCACCGATTATTTGTCACATCGCACCCGCGAAGGTAGCC
TCATCTGCATTGACATCTCCGCTGAAAACCACTTCGCACACTGCTCTCGC
CCGTCATCCGCATGACGAGGCCGACGACATCTGCCTGGTGCCAGAAATCG
ACTTCGAGGGCATGTCCACGGACGCCGGCAGCGACAACCGGGAGTCACAG
CCGCTCTTGGGGGGAGGNCATGCCAGTCACGGAAGTCGCATCAACGAGCT
TTTGGGCGGACTAGGACGCGGGCACGATCATGTGGAGTTTGTATCGAACA
CATTTGGCGATGACCCGCTTTTCTCGGAGATCGTGGCGAAGGCGGGAGGG
GGCCATCGAGAA
BO17812.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2929-PA | 2133 | Pi4KIIalpha-RA | 1..845 | 17..862 | 4121 | 99.5 | Plus |
| CG2929-PC | 2133 | Pi4KIIalpha-RC | 1..845 | 17..862 | 4121 | 99.5 | Plus |
| CG2929-PB | 1692 | Pi4KIIalpha-RB | 353..404 | 810..862 | 225 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 326..1172 | 15..862 | 4174 | 99.5 | Plus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 353..1199 | 15..862 | 4174 | 99.5 | Plus |
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 591..642 | 810..862 | 240 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5562263..5562896 | 813..180 | 3114 | 99.4 | Minus |
| 3R | 32079331 | 3R | 5562965..5563131 | 181..15 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 5560142..5560194 | 862..809 | 220 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:28:30 has no hits.
BO17812.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:35 Download gff for
BO17812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2929-PC | 1..843 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:20:56 Download gff for
BO17812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 344..1199 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:37:23 Download gff for
BO17812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 344..1199 | 8..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:37:23 Download gff for
BO17812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5560142..5560193 | 810..862 | 98 | <- | Minus |
| 3R | 5562267..5562894 | 182..809 | 99 | <- | Minus |
| 3R | 5562965..5563140 | 8..181 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:20:56 Download gff for
BO17812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1385864..1385915 | 810..862 | 98 | <- | Minus |
| arm_3R | 1387989..1388616 | 182..809 | 99 | <- | Minus |
| arm_3R | 1388687..1388862 | 8..181 | 98 | | Minus |
BO17812.complete Sequence
2164 bp assembled on 2006-12-18
GenBank Submission: FJ634226
> BO17812.complete
GAAGTTATCAGTCGACATGAGCGGCGCTCGGGATCAGACGGATCCCCCGC
TGCTCCAGCTCGAGGACGAGGTGGATCTCATCGGGGACTTTGCCAAGGAC
CAACCTCCGCCCAGAAACCAACTGTCTCCGCTTTTAAATGGCTTCGAGTC
GACAAGCAACCAGTTGACCACCAAAGTTGAGATCAACACCGTCGGCATGG
GCAAACGCAAGACAAGGAGAAGAGGGAAAAAGGCGCGGGAACCCATGCTA
CTGTCGGTGGACGACGAGGATGACGAGGAAGAGGCGCAAGAGGAGAGGAA
CCACACCAACGGGCTGCCGCCAGGCGAGGAGAGTGCCGGCGGCGATGCTG
TTATTCAGAAACCGCAACTGGATAACTTGGTCATGCATTACGACGACCAG
ATCGACGACGAAGATGGCGAAGAAGCTGTGCTGCTGAAGAGAAGCTCAAA
CCCGCGCAACCAAAGACTCAAAGGTAGCGCTGAGGATAGCATCGACAGCA
GCAGCCAACAGCCACCGATTATTTGTCACATCGCACCCGCGAAGGTAGCC
TCATCTGCATTGACATCTCCGCTGAAAACCACTTCGCACACTGCTCTCGC
CCGTCATCCGCATGACGAGGCCGACGACATCTGCCTGGTGCCAGAAATCG
ACTTCGAGGGCATGTCCACGGACGCCGGCAGCGACAACCGGGAGTCACAG
CCGCTCTTGGGGGGAGGCAATGCCAGTCACGGAAGTCGCATCAGCGAGCT
TTTGGGCGGACTAGGACGCGGGCACGATCATGTGGAGTTTGTATCGAACA
CATTTGGCGATGACCCGCTTTTCTCGGAGATCGTGGCGAAGGCGGAGGGG
GCCATCGAGAATGGTGTGCTGCCCGAGCGCATTTACCAGGGTAGCAGTGG
TTCCTACTTTGTCAAGGATGCCTCCCATCAATGCCTGGCCGTATTTAAGC
CAAAGGACGAGGAACCCTATGGCAGACTGAATCCGAAGTGGACGAAATGG
ATGCATAAGCTGTGCTGCCCGTGTTGTTTTGGCCGAGCTTGCTTGATTCC
CAATCAGGGGTACCTCTCCGAATCAGGAGCCAGCTTGGTTGATCGAAAAC
TCAATCTGAATGTGGTTCCAAAGACGCGAGTGGTCAGATTGGTTGCCGAG
AGCTTTAACTACGCACGCATTGATCGACAGAAGGCCAAGCTGAAGAAGCG
CATTAAAGAGCACTATCCGTCGGCTCACTTCAACCGAATGAGCCTTCCTC
TAAAGACTGGCTCCTTTCAGCTCTTCGTGGAGGGTTACAAGGATGCGGAC
TATTGGCTGCGGCGCTTTGAAAGCGAACCCTTGCCGCCTTCAGTGGCGAA
GTCGTTCCAACTGCAGTTCGAGCGCCTCGTCGTGCTCGATTATATCATAC
GCAACACGGACCGTGGCAACGACAACTGGCTGATCAAGTACGTGGCCCCT
AAGATCACGACCCAGGTGGGAGGCACTGGCGGCAGAACTATGCACGGAGT
TGTGACCCCCAAATTGCCCAATGCGTTGGGGGCTTCAAAAATCGTTGACC
TAAACGAGCCGCCGCAGGCTAGCCCGAAACCGACTACTGGTGGTCGCCCT
TCGAACCACCTAGCGGGTGGAGCAGCCACAAGTGCACAGCAAGATAGCAG
CAGTTTGGCCAGCAGCGAAGATGAACCCTCGTCGAGATCCCCCCCTACGT
CGGAACCCGATTGGAATGTGGTGAACTCGGCCTTCATTCGGATCGCTGCC
ATCGACAATGGTCTCGCTTTTCCCTTCAAGCATCCGGACTCTTGGCGAGC
TTATCCCTACCATTGGGCCTGGTTGCCACAGGCGAAAATTCCGTTTAGCG
AAGAAATCAAGGAGCAGGTGCTGCCGCAGTTGTCAGATATGAACTTTGTA
GAGGAGATCTGCACGGAGTTGTTGTACCTCTTCCAGCAGGATCGCGGCTT
TGACAAGCGTCTCTTCGAGCGCCAGATGTCGGTGATGCGGGGCCAGATTC
TAAATCTCACACAGGCACTGAGGGATGGCAAGTCGCCGGTGCAACTGGTC
CAGATGCCAGCGGTGATTGTCGAGCGATCAAGTGGCAGTCGTTTCTTCTC
TTTTACGCAGCGCTTCCAAAATAAGAGCCCTTTCTTCTCTTGGTGCGCAA
GCTTTCTAGACCAT
BO17812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 2133 | CG2929-PC | 1..2130 | 17..2146 | 10650 | 100 | Plus |
| Pi4KIIalpha-RA | 2133 | CG2929-PA | 1..2130 | 17..2146 | 10650 | 100 | Plus |
| Pi4KIIalpha-RB | 1692 | CG2929-PB | 353..1689 | 810..2146 | 6685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 326..2457 | 15..2146 | 10660 | 100 | Plus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 353..2484 | 15..2146 | 10660 | 100 | Plus |
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 591..1927 | 810..2146 | 6685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5558499..5559321 | 2076..1254 | 4115 | 100 | Minus |
| 3R | 32079331 | 3R | 5562263..5562896 | 813..180 | 3155 | 99.8 | Minus |
| 3R | 32079331 | 3R | 5559379..5559575 | 1255..1059 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 5562965..5563131 | 181..15 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 5559669..5559802 | 1062..929 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 5560075..5560194 | 928..809 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 5558367..5558436 | 2145..2076 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:44:48 has no hits.
BO17812.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:05 Download gff for
BO17812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RC | 1..2133 | 17..2150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:42 Download gff for
BO17812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RC | 290..2433 | 8..2150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:38 Download gff for
BO17812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 355..2484 | 17..2148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:05 Download gff for
BO17812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RC | 290..2433 | 8..2150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:36 Download gff for
BO17812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RA | 355..2484 | 17..2148 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:36 Download gff for
BO17812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5560075..5560193 | 810..928 | 100 | <- | Minus |
| 3R | 5558499..5559319 | 1256..2076 | 100 | <- | Minus |
| 3R | 5559379..5559574 | 1060..1255 | 100 | <- | Minus |
| 3R | 5558365..5558435 | 2077..2148 | 97 | <- | Minus |
| 3R | 5559672..5559802 | 929..1059 | 100 | <- | Minus |
| 3R | 5562267..5562894 | 182..809 | 100 | <- | Minus |
| 3R | 5562965..5563129 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:38 Download gff for
BO17812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1385797..1385915 | 810..928 | 100 | <- | Minus |
| arm_3R | 1384087..1384157 | 2077..2148 | 97 | <- | Minus |
| arm_3R | 1384221..1385041 | 1256..2076 | 100 | <- | Minus |
| arm_3R | 1385101..1385296 | 1060..1255 | 100 | <- | Minus |
| arm_3R | 1385394..1385524 | 929..1059 | 100 | <- | Minus |
| arm_3R | 1387989..1388616 | 182..809 | 100 | <- | Minus |
| arm_3R | 1388687..1388851 | 17..181 | 100 | | Minus |
BO17812.pep Sequence
Translation from 16 to 2164
> BO17812.pep
MSGARDQTDPPLLQLEDEVDLIGDFAKDQPPPRNQLSPLLNGFESTSNQL
TTKVEINTVGMGKRKTRRRGKKAREPMLLSVDDEDDEEEAQEERNHTNGL
PPGEESAGGDAVIQKPQLDNLVMHYDDQIDDEDGEEAVLLKRSSNPRNQR
LKGSAEDSIDSSSQQPPIICHIAPAKVASSALTSPLKTTSHTALARHPHD
EADDICLVPEIDFEGMSTDAGSDNRESQPLLGGGNASHGSRISELLGGLG
RGHDHVEFVSNTFGDDPLFSEIVAKAEGAIENGVLPERIYQGSSGSYFVK
DASHQCLAVFKPKDEEPYGRLNPKWTKWMHKLCCPCCFGRACLIPNQGYL
SESGASLVDRKLNLNVVPKTRVVRLVAESFNYARIDRQKAKLKKRIKEHY
PSAHFNRMSLPLKTGSFQLFVEGYKDADYWLRRFESEPLPPSVAKSFQLQ
FERLVVLDYIIRNTDRGNDNWLIKYVAPKITTQVGGTGGRTMHGVVTPKL
PNALGASKIVDLNEPPQASPKPTTGGRPSNHLAGGAATSAQQDSSSLASS
EDEPSSRSPPTSEPDWNVVNSAFIRIAAIDNGLAFPFKHPDSWRAYPYHW
AWLPQAKIPFSEEIKEQVLPQLSDMNFVEEICTELLYLFQQDRGFDKRLF
ERQMSVMRGQILNLTQALRDGKSPVQLVQMPAVIVERSSGSRFFSFTQRF
QNKSPFFSWCASFLDH
BO17812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-PC | 710 | CG2929-PC | 1..710 | 1..710 | 3740 | 100 | Plus |
| Pi4KIIalpha-PA | 710 | CG2929-PA | 1..710 | 1..710 | 3740 | 100 | Plus |
| Pi4KIIalpha-PB | 563 | CG2929-PB | 119..563 | 266..710 | 2363 | 100 | Plus |
