Clone Sequence Records
BO17813.3prime Sequence
695 bp (670 high quality bases) assembled on 2006-10-13
> BO17813.3prime
ATGGTCTAGAAAGCTTGCAATTTGAACCACGAGCTTGGCCCTTTTTCTCC
AAGCCACTAGCGCAGGCGTCAGATCCTTCTCGGTAACAGCTGGCATGCGT
ATCAGTGAGCTGTAGACACCGACATCCGCCACCGACATCTGGGATCCACC
GAAATACTGCTGCTTCTGCAGTCGCTTGTCCAGCAGGCGCACCATGGCCA
CCTGCGTTTTGTGCGTGTTGCAGCGCAGCAGTTGGTAGCAAATGTCCAGG
ACAAGGTCGATCTCATTGCAGAGCGGAGAGCCCTCATAACGATACTCGGC
TGGACCCACACGGCCCAGATAGCGAATGATGTTCACCTCTCCGTAGATGG
GCACGTACATGGTGGGCGAGCTGATCATCTCGGTGTGTTCGCAGTTCTTC
CAGATGAGCGTCACACTAATCTTGGGCAAAGCAGGGTTTACTGGAACCTT
CGCCAAGTTGGCCTCGAATTCCCGTGCTGCTGGTCCAATGTCGGCCATCG
TAGAGTGCGTAAAGGTCTTGACATCAATAGTGTACAGATTGCGCCAGGCA
TTTTTCAGGGCCAACAAGGCATAGGGTATGAAGTTGGGATGTCCATTGAT
GACGACATCCTGCAGTGGCACCTCCTTTAATCCACCATTCTGGAAAGCAG
TCGTGTGCTGGAAAGTCTTGCCACAAACACCAAGTCCCGCCCGGA
BO17813.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-PA | 1005 | CG12304-RA | 326..1002 | 695..19 | 3385 | 100 | Minus |
| CG12304-PB | 906 | CG12304-RB | 227..903 | 695..19 | 3385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-RB | 1051 | CG12304-RB | 324..1000 | 695..19 | 3385 | 100 | Minus |
| CG12304-RA | 1150 | CG12304-RA | 423..1099 | 695..19 | 3385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15584923..15585296 | 392..19 | 1870 | 100 | Minus |
| 3L | 28110227 | 3L | 15584638..15584869 | 623..392 | 1160 | 100 | Minus |
| 3L | 28110227 | 3L | 15584366..15584441 | 695..620 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:25:42 has no hits.
BO17813.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:36 Download gff for
BO17813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-PB | 228..906 | 15..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:24 Download gff for
BO17813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RA | 424..1102 | 15..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:48 Download gff for
BO17813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RA | 424..1102 | 15..694 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:48 Download gff for
BO17813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15584367..15584439 | 622..694 | 100 | -> | Minus |
| 3L | 15584640..15584868 | 393..621 | 100 | -> | Minus |
| 3L | 15584923..15585299 | 15..392 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:24 Download gff for
BO17813.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15577467..15577539 | 622..694 | 100 | -> | Minus |
| arm_3L | 15577740..15577968 | 393..621 | 100 | -> | Minus |
| arm_3L | 15578023..15578399 | 15..392 | 99 | | Minus |
BO17813.5prime Sequence
736 bp (688 high quality bases) assembled on 2006-10-13
> BO17813.5prime
GAAGTTATCAGTCGACATGTACGAACTGAAGACTCTGCTGCCGCAATTCG
ACATAAAGCTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCG
GCGGATTCCTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTC
CACATCATCATGCGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGG
TTCTCAAGCAGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCG
GGACTTGGTGTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAA
TGGTGGATTAAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATC
CCAACTTCATACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAAT
CTGTACACTATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACAT
TGGACCAGCAGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAA
ACCCTGCTTTGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAA
CACACCGAGATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGA
GGTGAACATCATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTT
ATGAGGGCTCTCCGCTCTGCAATGAGATCGACCTTGTCCTGGACATTTGC
TACCAACTGCTGCGCTGCAACACGCACAAAACGCAG
BO17813.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-PB | 906 | CG12304-RB | 1..720 | 17..736 | 3600 | 100 | Plus |
| CG12304-PA | 1005 | CG12304-RA | 247..819 | 164..736 | 2865 | 100 | Plus |
| CG12304-PA | 1005 | CG12304-RA | 1..147 | 17..163 | 735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-RB | 1051 | CG12304-RB | 98..817 | 17..736 | 3600 | 100 | Plus |
| CG12304-RA | 1150 | CG12304-RA | 344..916 | 164..736 | 2865 | 100 | Plus |
| CG12304-RA | 1150 | CG12304-RA | 98..244 | 17..163 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15584638..15584869 | 315..546 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 15584923..15585113 | 546..736 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 15584287..15584441 | 164..318 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 15583735..15583882 | 17..164 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:09:33 has no hits.
BO17813.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:37 Download gff for
BO17813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-PB | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:39 Download gff for
BO17813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RB | 98..817 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:10 Download gff for
BO17813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RB | 98..817 | 17..736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:10 Download gff for
BO17813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15584640..15584868 | 317..545 | 100 | -> | Plus |
| 3L | 15583730..15583881 | 13..163 | 98 | -> | Plus |
| 3L | 15584287..15584439 | 164..316 | 100 | -> | Plus |
| 3L | 15584923..15585113 | 546..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:39 Download gff for
BO17813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15576830..15576981 | 13..163 | 98 | -> | Plus |
| arm_3L | 15577387..15577539 | 164..316 | 100 | -> | Plus |
| arm_3L | 15577740..15577968 | 317..545 | 100 | -> | Plus |
| arm_3L | 15578023..15578213 | 546..736 | 100 | | Plus |
BO17813.complete Sequence
937 bp assembled on 2006-10-11
GenBank Submission: FJ634227
> BO17813.complete
GAAGTTATCAGTCGACATGTACGAACTGAAGACTCTGCTGCCGCAATTCG
ACATAAAGCTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCG
GCGGATTCCTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTC
CACATCATCATGCGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGG
TTCTCAAGCAGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCG
GGACTTGGTGTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAA
TGGTGGATTAAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATC
CCAACTTCATACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAAT
CTGTACACTATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACAT
TGGACCAGCAGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAA
ACCCTGCTTTGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAA
CACACCGAGATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGA
GGTGAACATCATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTT
ATGAGGGCTCTCCGCTCTGCAATGAGATCGACCTTGTCCTGGACATTTGC
TACCAACTGCTGCGCTGCAACACGCACAAAACGCAGGTGGCCATGGTGCG
CCTGCTGGACAAGCGACTGCAGAAGCAGCAGTATTTCGGTGGATCCCAGA
TGTCGGTGGCGGATGTCGGTGTCTACAGCTCACTGATACGCATGCCAGCT
GTTACCGAGAAGGATCTGACGCCTGCGCTAGTGGCTTGGAGAAAAAGGGC
CAAGCTCGTGGTTCAAATTGCAAGCTTTCTAGACCAT
BO17813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-RB | 906 | CG12304-PB | 1..903 | 17..919 | 4515 | 100 | Plus |
| CG12304-RA | 1005 | CG12304-PA | 247..1002 | 164..919 | 3780 | 100 | Plus |
| CG12304-RA | 1005 | CG12304-PA | 1..147 | 17..163 | 735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-RB | 1051 | CG12304-RB | 98..1000 | 17..919 | 4515 | 100 | Plus |
| CG12304-RA | 1150 | CG12304-RA | 344..1099 | 164..919 | 3780 | 100 | Plus |
| CG12304-RA | 1150 | CG12304-RA | 98..244 | 17..163 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15584923..15585296 | 546..919 | 1870 | 100 | Plus |
| 3L | 28110227 | 3L | 15584638..15584869 | 315..546 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 15584287..15584441 | 164..318 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 15583735..15583882 | 17..164 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:38:36 has no hits.
BO17813.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:59 Download gff for
BO17813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RB | 1..906 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:56 Download gff for
BO17813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RB | 93..995 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:52 Download gff for
BO17813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RB | 98..1000 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:59 Download gff for
BO17813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RB | 93..998 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:10 Download gff for
BO17813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12304-RB | 98..1000 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:10 Download gff for
BO17813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15583735..15583881 | 17..163 | 100 | -> | Plus |
| 3L | 15584287..15584439 | 164..316 | 100 | -> | Plus |
| 3L | 15584640..15584868 | 317..545 | 100 | -> | Plus |
| 3L | 15584923..15585296 | 546..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:52 Download gff for
BO17813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15577387..15577539 | 164..316 | 100 | -> | Plus |
| arm_3L | 15576835..15576981 | 17..163 | 100 | -> | Plus |
| arm_3L | 15577740..15577968 | 317..545 | 100 | -> | Plus |
| arm_3L | 15578023..15578396 | 546..921 | 99 | | Plus |
BO17813.pep Sequence
Translation from 16 to 937
> BO17813.pep
MYELKTLLPQFDIKLPTCMYPLKNVSLAADSLASGSSTSASTSASTSSCD
DTASVAARQEKVLKQLEELKAQLGQIRAGLGVCGKTFQHTTAFQNGGLKE
VPLQDVVINGHPNFIPYALLALKNAWRNLYTIDVKTFTHSTMADIGPAAR
EFEANLAKVPVNPALPKISVTLIWKNCEHTEMISSPTMYVPIYGEVNIIR
YLGRVGPAEYRYEGSPLCNEIDLVLDICYQLLRCNTHKTQVAMVRLLDKR
LQKQQYFGGSQMSVADVGVYSSLIRMPAVTEKDLTPALVAWRKRAKLVVQ
IASFLDH
BO17813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12304-PB | 301 | CG12304-PB | 1..301 | 1..301 | 1547 | 100 | Plus |
| CG12304-PA | 334 | CG12304-PA | 1..334 | 1..301 | 1503 | 90.1 | Plus |
