Clone Sequence Records
BO17819.3prime Sequence
780 bp (726 high quality bases) assembled on 2006-10-13
> BO17819.3prime
ATGGTCTAGAAAGCTTGCATCACTATCATCCGATTGTCCAAACATATCAC
TGGCGCGCTGATATCGCGCCTGAGTGATCTTCAAGTTGGCCAGCTTCCGT
TTGTCAATGGTTCTGGAGCTGGACAGCACTGGGTCACTGTTTCCCAGACC
GCTAGTGCCCTCATTGGCTACCACATTGATCGGCTCCAAAAGTCCAGCAC
TGGCATTTGTTTTGCCCAGTTTTTCGCCCTTTTGCCAGCCCAATTTACTC
AGCATTTTAAAACCCTTATTAGAGCTACCGATTTCAGTGTTCACACAAGC
CACCTCAGTCTTTTCTTTATCTGTACTGCTGCCCACCTGGACTCTCCTTG
TTGCGGCACGATCATTGTAGTTGGACTGCCCATTGCCGCTAGTATCAACG
AATTTTTCGTTTTCTAGTCCATATTTGCGCTGCAGTTTTTTTAACTGCTC
CTTGTGAGATAATACGGATGCGGTGGATGAGGCAACAGCGGCCACTACCG
GCGGAGAATTCTCTATCAAAAGGCCCGGCTCGCACAAACCGCAGGTACTG
TTACCCTCGTGGACATGACACAGTAGTCTTGTTTGGCCCAGAGTGATAAC
ACTGCCGTGAACGAGATCCATGGCGTCGCTGGACATTGGGGATCCATTGA
GAATGGTACCGTTTCGGGAGCCCAGATCAAGACATTGGTAGATTCCCAAC
TTGTTCTCATACTTAAACTTTAAGTGGCACTTGCTGACGTTCACGTCCGG
AATGATAACATCGTGAGCGCCCTCCCGTCC
BO17819.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-PB | 1800 | CG8079-RB | 1036..1797 | 780..19 | 3810 | 100 | Minus |
CG8079-PA | 1806 | CG8079-RA | 1042..1803 | 780..19 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-RE | 2096 | CG8079-RE | 1209..1970 | 780..19 | 3810 | 100 | Minus |
CG8079-RD | 2159 | CG8079-RD | 1272..2033 | 780..19 | 3810 | 100 | Minus |
CG8079-RC | 2838 | CG8079-RC | 827..1588 | 780..19 | 3810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15222607..15222982 | 780..405 | 1880 | 100 | Minus |
2R | 25286936 | 2R | 15223383..15223545 | 181..19 | 815 | 100 | Minus |
2R | 25286936 | 2R | 15223042..15223159 | 404..287 | 590 | 100 | Minus |
2R | 25286936 | 2R | 15223221..15223326 | 286..181 | 530 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 16:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 209..261 | 446..394 | 112 | 67.9 | Minus |
BO17819.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:43 Download gff for
BO17819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-PA | 1042..1806 | 18..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:38:21 Download gff for
BO17819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RC | 827..1588 | 19..780 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:35:35 Download gff for
BO17819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RC | 827..1588 | 19..780 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:35:35 Download gff for
BO17819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15222607..15222982 | 405..780 | 100 | -> | Minus |
2R | 15223042..15223159 | 287..404 | 100 | -> | Minus |
2R | 15223221..15223326 | 181..286 | 100 | -> | Minus |
2R | 15223384..15223545 | 19..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:38:21 Download gff for
BO17819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11110112..11110487 | 405..780 | 100 | -> | Minus |
arm_2R | 11110547..11110664 | 287..404 | 100 | -> | Minus |
arm_2R | 11110726..11110831 | 181..286 | 100 | -> | Minus |
arm_2R | 11110889..11111050 | 19..180 | 100 | | Minus |
BO17819.5prime Sequence
724 bp (692 high quality bases) assembled on 2006-10-13
> BO17819.5prime
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGTACAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGA
GGATTTGGAGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACG
AAACGCTGAAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCT
GAAAAATCCAAGCGCAAAGCCAAG
BO17819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-PA | 1806 | CG8079-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
CG8079-PB | 1800 | CG8079-RB | 1..702 | 17..724 | 3425 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-RA | 2156 | CG8079-RA | 84..791 | 17..724 | 3540 | 100 | Plus |
CG8079-RB | 2218 | CG8079-RB | 84..785 | 17..724 | 3440 | 99.2 | Plus |
CG8079-RE | 2096 | CG8079-RE | 86..634 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15218464..15218657 | 17..210 | 970 | 100 | Plus |
2R | 25286936 | 2R | 15222041..15222202 | 563..724 | 810 | 100 | Plus |
2R | 25286936 | 2R | 15221429..15221566 | 333..470 | 690 | 100 | Plus |
2R | 25286936 | 2R | 15218713..15218836 | 209..332 | 620 | 100 | Plus |
2R | 25286936 | 2R | 15221727..15221824 | 469..566 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:36:48 has no hits.
BO17819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:44 Download gff for
BO17819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:55:01 Download gff for
BO17819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..791 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:07:29 Download gff for
BO17819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..791 | 17..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:07:29 Download gff for
BO17819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15218464..15218655 | 17..208 | 100 | -> | Plus |
2R | 15218713..15218836 | 209..332 | 100 | -> | Plus |
2R | 15221429..15221565 | 333..469 | 100 | -> | Plus |
2R | 15221728..15221823 | 470..565 | 100 | -> | Plus |
2R | 15222044..15222202 | 566..724 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:55:01 Download gff for
BO17819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11105969..11106160 | 17..208 | 100 | -> | Plus |
arm_2R | 11106218..11106341 | 209..332 | 100 | -> | Plus |
arm_2R | 11108934..11109070 | 333..469 | 100 | -> | Plus |
arm_2R | 11109233..11109328 | 470..565 | 100 | -> | Plus |
arm_2R | 11109549..11109707 | 566..724 | 100 | | Plus |
BO17819.complete Sequence
1837 bp assembled on 2006-12-18
GenBank Submission: FJ634228
> BO17819.complete
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGTACAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGA
GGATTTGGAGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACG
AAACGCTGAAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCT
GAAAAATCCAAGCGCAAAGCCAAGAAAAAGAAGAGTAAAAAGCACAGCAA
GAAGAGATCCAAGAAGGAGCGCCGTCACAAGTCCAAGAAGCGTCACAGGC
ATTCTGATGATGAGCGGTCTAATGATGCCGAGGAGGGCGAGCTGTCGCAA
AGCAGCGACTCCAGTTCCGACTCTAGCAACGAGGATAGCAGCAGCAACAC
GGAAGACAGCAGTGTTCCAGTTTTCAAGGCTGCCGGACGCTTTCAAGACA
TTGCTAAAAAGTATCCACCCTCCCTCCGCATCATTGTCCAGGAGACTAAC
GTAGAGTCGCTGAAAGTGGGAAGCCTGCATCTAATCACATACAAAGGTGG
ATCTCTTGGACGGGAGGGCGCTCACGATGTTATCATTCCGGACGTGAACG
TCAGCAAGTGCCACTTAAAGTTTAAGTATGAGAACAAGTTGGGAATCTAC
CAATGTCTTGATCTGGGCTCCCGAAACGGTACCATTCTCAATGGATCCCC
AATGTCCAGCGACGCCATGGATCTCGTTCACGGCAGTGTTATCACTCTGG
GCCAAACAAGACTACTGTGTCATGTCCACGAGGGTAACAGTACCTGCGGT
TTGTGCGAGCCGGGCCTTTTGATAGAGAATTCTCCGCCGGTAGTGGCCGC
TGTTGCCTCATCCACCGCATCCGTATTATCTCACAAGGAGCAGTTAAAAA
AACTGCAGCGCAAATATGGACTAGAAAACGAAAAATTCGTTGATACTAGC
GGCAATGGGCAGTCCAACTACAATGATCGTGCCGCAACAAGGAGAGTCCA
GGTGGGCAGCAGTACAGATAAAGAAAAGACTGAGGTGGCTTGTGTGAACA
CTGAAATCGGTAGCTCTAATAAGGGTTTTAAAATGCTGAGTAAATTGGGC
TGGCAAAAGGGCGAAAAACTGGGCAAAACAAATGCCAGTGCTGGACTTTT
GGAGCCGATCAATGTGGTAGCCAATGAGGGCACTAGCGGTCTGGGAAACA
GTGACCCAGTGCTGTCCAGCTCCAGAACCATTGACAAACGGAAGCTGGCC
AACTTGAAGATCACTCAGGCGCGATATCAGCGCGCCAGTGATATGTTTGG
ACAATCGGATGATAGTGATGCAAGCTTTCTAGACCAT
BO17819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-RA | 1806 | CG8079-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
CG8079-RB | 1800 | CG8079-PB | 1..1797 | 17..1819 | 8890 | 99.7 | Plus |
CG8079-RC | 1506 | CG8079-PC | 630..1503 | 946..1819 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-RA | 2156 | CG8079-RA | 84..1886 | 17..1819 | 9015 | 100 | Plus |
CG8079-RB | 2218 | CG8079-RB | 84..1880 | 17..1819 | 8890 | 99.7 | Plus |
CG8079-RD | 2159 | CG8079-RD | 777..2033 | 563..1819 | 6285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15222495..15222982 | 946..1433 | 2440 | 100 | Plus |
2R | 25286936 | 2R | 15222041..15222425 | 563..947 | 1925 | 100 | Plus |
2R | 25286936 | 2R | 15218464..15218657 | 17..210 | 970 | 100 | Plus |
2R | 25286936 | 2R | 15223383..15223545 | 1657..1819 | 815 | 100 | Plus |
2R | 25286936 | 2R | 15221429..15221566 | 333..470 | 690 | 100 | Plus |
2R | 25286936 | 2R | 15218713..15218836 | 209..332 | 620 | 100 | Plus |
2R | 25286936 | 2R | 15223042..15223159 | 1434..1551 | 590 | 100 | Plus |
2R | 25286936 | 2R | 15223221..15223326 | 1552..1657 | 530 | 100 | Plus |
2R | 25286936 | 2R | 15221727..15221824 | 469..566 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:01:29 has no hits.
BO17819.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:07 Download gff for
BO17819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 1..1806 | 17..1820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:43 Download gff for
BO17819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1886 | 17..1819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:49 Download gff for
BO17819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1886 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:07 Download gff for
BO17819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1886 | 17..1819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:59 Download gff for
BO17819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1886 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:59 Download gff for
BO17819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15218464..15218655 | 17..208 | 100 | -> | Plus |
2R | 15218713..15218836 | 209..332 | 100 | -> | Plus |
2R | 15221429..15221565 | 333..469 | 100 | -> | Plus |
2R | 15221728..15221823 | 470..565 | 100 | -> | Plus |
2R | 15222044..15222425 | 566..947 | 100 | -> | Plus |
2R | 15223042..15223159 | 1434..1551 | 100 | -> | Plus |
2R | 15223221..15223326 | 1552..1657 | 100 | -> | Plus |
2R | 15223384..15223545 | 1658..1821 | 98 | | Plus |
2R | 15222497..15222982 | 948..1433 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:49 Download gff for
BO17819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11105969..11106160 | 17..208 | 100 | -> | Plus |
arm_2R | 11106218..11106341 | 209..332 | 100 | -> | Plus |
arm_2R | 11108934..11109070 | 333..469 | 100 | -> | Plus |
arm_2R | 11109233..11109328 | 470..565 | 100 | -> | Plus |
arm_2R | 11109549..11109930 | 566..947 | 100 | -> | Plus |
arm_2R | 11110002..11110487 | 948..1433 | 100 | -> | Plus |
arm_2R | 11110547..11110664 | 1434..1551 | 100 | -> | Plus |
arm_2R | 11110726..11110831 | 1552..1657 | 100 | -> | Plus |
arm_2R | 11110889..11111050 | 1658..1821 | 98 | | Plus |
BO17819.pep Sequence
Translation from 16 to 1837
> BO17819.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQANDAAKPESEDEDLEVQ
FDELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKK
ERRHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSNTEDSSV
PVFKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGRE
GAHDVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMSSDA
MDLVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASST
ASVLSHKEQLKKLQRKYGLENEKFVDTSGNGQSNYNDRAATRRVQVGSST
DKEKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINV
VANEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQRASDMFGQSDDS
DASFLDH
BO17819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-PA | 601 | CG8079-PA | 1..601 | 1..601 | 3101 | 100 | Plus |
CG8079-PB | 599 | CG8079-PB | 1..599 | 1..601 | 3079 | 99.7 | Plus |
CG8079-PC | 501 | CG8079-PC | 211..501 | 311..601 | 1490 | 100 | Plus |
CG8079-PC | 501 | CG8079-PC | 1..183 | 1..183 | 974 | 100 | Plus |
CG8079-PE | 229 | CG8079-PE | 1..183 | 1..183 | 974 | 100 | Plus |
CG8079-PD | 250 | CG8079-PD | 1..183 | 1..183 | 974 | 100 | Plus |