Clone BO17819 Report

Search the DGRC for BO17819

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG8079-RA
Protein status:BO17819.pep: validated full length
Sequenced Size:1837

Clone Sequence Records

BO17819.3prime Sequence

780 bp (726 high quality bases) assembled on 2006-10-13

> BO17819.3prime
ATGGTCTAGAAAGCTTGCATCACTATCATCCGATTGTCCAAACATATCAC
TGGCGCGCTGATATCGCGCCTGAGTGATCTTCAAGTTGGCCAGCTTCCGT
TTGTCAATGGTTCTGGAGCTGGACAGCACTGGGTCACTGTTTCCCAGACC
GCTAGTGCCCTCATTGGCTACCACATTGATCGGCTCCAAAAGTCCAGCAC
TGGCATTTGTTTTGCCCAGTTTTTCGCCCTTTTGCCAGCCCAATTTACTC
AGCATTTTAAAACCCTTATTAGAGCTACCGATTTCAGTGTTCACACAAGC
CACCTCAGTCTTTTCTTTATCTGTACTGCTGCCCACCTGGACTCTCCTTG
TTGCGGCACGATCATTGTAGTTGGACTGCCCATTGCCGCTAGTATCAACG
AATTTTTCGTTTTCTAGTCCATATTTGCGCTGCAGTTTTTTTAACTGCTC
CTTGTGAGATAATACGGATGCGGTGGATGAGGCAACAGCGGCCACTACCG
GCGGAGAATTCTCTATCAAAAGGCCCGGCTCGCACAAACCGCAGGTACTG
TTACCCTCGTGGACATGACACAGTAGTCTTGTTTGGCCCAGAGTGATAAC
ACTGCCGTGAACGAGATCCATGGCGTCGCTGGACATTGGGGATCCATTGA
GAATGGTACCGTTTCGGGAGCCCAGATCAAGACATTGGTAGATTCCCAAC
TTGTTCTCATACTTAAACTTTAAGTGGCACTTGCTGACGTTCACGTCCGG
AATGATAACATCGTGAGCGCCCTCCCGTCC

BO17819.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PB 1800 CG8079-RB 1036..1797 780..19 3810 100 Minus
CG8079-PA 1806 CG8079-RA 1042..1803 780..19 3810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RE 2096 CG8079-RE 1209..1970 780..19 3810 100 Minus
CG8079-RD 2159 CG8079-RD 1272..2033 780..19 3810 100 Minus
CG8079-RC 2838 CG8079-RC 827..1588 780..19 3810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15222607..15222982 780..405 1880 100 Minus
2R 25286936 2R 15223383..15223545 181..19 815 100 Minus
2R 25286936 2R 15223042..15223159 404..287 590 100 Minus
2R 25286936 2R 15223221..15223326 286..181 530 100 Minus
Blast to na_te.dros performed 2015-02-13 16:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 209..261 446..394 112 67.9 Minus

BO17819.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:43 Download gff for BO17819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-PA 1042..1806 18..780 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:38:21 Download gff for BO17819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RC 827..1588 19..780 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:35:35 Download gff for BO17819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RC 827..1588 19..780 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:35:35 Download gff for BO17819.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15222607..15222982 405..780 100 -> Minus
2R 15223042..15223159 287..404 100 -> Minus
2R 15223221..15223326 181..286 100 -> Minus
2R 15223384..15223545 19..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:38:21 Download gff for BO17819.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11110112..11110487 405..780 100 -> Minus
arm_2R 11110547..11110664 287..404 100 -> Minus
arm_2R 11110726..11110831 181..286 100 -> Minus
arm_2R 11110889..11111050 19..180 100   Minus

BO17819.5prime Sequence

724 bp (692 high quality bases) assembled on 2006-10-13

> BO17819.5prime
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGTACAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGA
GGATTTGGAGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACG
AAACGCTGAAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCT
GAAAAATCCAAGCGCAAAGCCAAG

BO17819.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PA 1806 CG8079-RA 1..708 17..724 3540 100 Plus
CG8079-PB 1800 CG8079-RB 1..702 17..724 3425 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RA 2156 CG8079-RA 84..791 17..724 3540 100 Plus
CG8079-RB 2218 CG8079-RB 84..785 17..724 3440 99.2 Plus
CG8079-RE 2096 CG8079-RE 86..634 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15218464..15218657 17..210 970 100 Plus
2R 25286936 2R 15222041..15222202 563..724 810 100 Plus
2R 25286936 2R 15221429..15221566 333..470 690 100 Plus
2R 25286936 2R 15218713..15218836 209..332 620 100 Plus
2R 25286936 2R 15221727..15221824 469..566 490 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:36:48 has no hits.

BO17819.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:44 Download gff for BO17819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:55:01 Download gff for BO17819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..791 17..724 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:07:29 Download gff for BO17819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..791 17..724 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:07:29 Download gff for BO17819.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15218464..15218655 17..208 100 -> Plus
2R 15218713..15218836 209..332 100 -> Plus
2R 15221429..15221565 333..469 100 -> Plus
2R 15221728..15221823 470..565 100 -> Plus
2R 15222044..15222202 566..724 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:55:01 Download gff for BO17819.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11105969..11106160 17..208 100 -> Plus
arm_2R 11106218..11106341 209..332 100 -> Plus
arm_2R 11108934..11109070 333..469 100 -> Plus
arm_2R 11109233..11109328 470..565 100 -> Plus
arm_2R 11109549..11109707 566..724 100   Plus

BO17819.complete Sequence

1837 bp assembled on 2006-12-18

GenBank Submission: FJ634228

> BO17819.complete
GAAGTTATCAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGG
ACACTGTCGCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTG
GAAACCTGCGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGG
GATTATCCGCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCC
TACACTACGTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAA
GCAACTGAATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGA
GGATACTAACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCT
TCAGTTTTGTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTG
AACAACTTCGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGAC
GGGATACTACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACG
GCTGCTACTACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCT
CAGGCCCAGGTACAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGA
GGATTTGGAGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACG
AAACGCTGAAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCT
GAAAAATCCAAGCGCAAAGCCAAGAAAAAGAAGAGTAAAAAGCACAGCAA
GAAGAGATCCAAGAAGGAGCGCCGTCACAAGTCCAAGAAGCGTCACAGGC
ATTCTGATGATGAGCGGTCTAATGATGCCGAGGAGGGCGAGCTGTCGCAA
AGCAGCGACTCCAGTTCCGACTCTAGCAACGAGGATAGCAGCAGCAACAC
GGAAGACAGCAGTGTTCCAGTTTTCAAGGCTGCCGGACGCTTTCAAGACA
TTGCTAAAAAGTATCCACCCTCCCTCCGCATCATTGTCCAGGAGACTAAC
GTAGAGTCGCTGAAAGTGGGAAGCCTGCATCTAATCACATACAAAGGTGG
ATCTCTTGGACGGGAGGGCGCTCACGATGTTATCATTCCGGACGTGAACG
TCAGCAAGTGCCACTTAAAGTTTAAGTATGAGAACAAGTTGGGAATCTAC
CAATGTCTTGATCTGGGCTCCCGAAACGGTACCATTCTCAATGGATCCCC
AATGTCCAGCGACGCCATGGATCTCGTTCACGGCAGTGTTATCACTCTGG
GCCAAACAAGACTACTGTGTCATGTCCACGAGGGTAACAGTACCTGCGGT
TTGTGCGAGCCGGGCCTTTTGATAGAGAATTCTCCGCCGGTAGTGGCCGC
TGTTGCCTCATCCACCGCATCCGTATTATCTCACAAGGAGCAGTTAAAAA
AACTGCAGCGCAAATATGGACTAGAAAACGAAAAATTCGTTGATACTAGC
GGCAATGGGCAGTCCAACTACAATGATCGTGCCGCAACAAGGAGAGTCCA
GGTGGGCAGCAGTACAGATAAAGAAAAGACTGAGGTGGCTTGTGTGAACA
CTGAAATCGGTAGCTCTAATAAGGGTTTTAAAATGCTGAGTAAATTGGGC
TGGCAAAAGGGCGAAAAACTGGGCAAAACAAATGCCAGTGCTGGACTTTT
GGAGCCGATCAATGTGGTAGCCAATGAGGGCACTAGCGGTCTGGGAAACA
GTGACCCAGTGCTGTCCAGCTCCAGAACCATTGACAAACGGAAGCTGGCC
AACTTGAAGATCACTCAGGCGCGATATCAGCGCGCCAGTGATATGTTTGG
ACAATCGGATGATAGTGATGCAAGCTTTCTAGACCAT

BO17819.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RA 1806 CG8079-PA 1..1803 17..1819 9015 100 Plus
CG8079-RB 1800 CG8079-PB 1..1797 17..1819 8890 99.7 Plus
CG8079-RC 1506 CG8079-PC 630..1503 946..1819 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RA 2156 CG8079-RA 84..1886 17..1819 9015 100 Plus
CG8079-RB 2218 CG8079-RB 84..1880 17..1819 8890 99.7 Plus
CG8079-RD 2159 CG8079-RD 777..2033 563..1819 6285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15222495..15222982 946..1433 2440 100 Plus
2R 25286936 2R 15222041..15222425 563..947 1925 100 Plus
2R 25286936 2R 15218464..15218657 17..210 970 100 Plus
2R 25286936 2R 15223383..15223545 1657..1819 815 100 Plus
2R 25286936 2R 15221429..15221566 333..470 690 100 Plus
2R 25286936 2R 15218713..15218836 209..332 620 100 Plus
2R 25286936 2R 15223042..15223159 1434..1551 590 100 Plus
2R 25286936 2R 15223221..15223326 1552..1657 530 100 Plus
2R 25286936 2R 15221727..15221824 469..566 490 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:01:29 has no hits.

BO17819.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:07 Download gff for BO17819.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 1..1806 17..1820 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:43 Download gff for BO17819.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1886 17..1819 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:49 Download gff for BO17819.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1886 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:07 Download gff for BO17819.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1886 17..1819 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:59 Download gff for BO17819.complete
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1886 17..1821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:59 Download gff for BO17819.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15218464..15218655 17..208 100 -> Plus
2R 15218713..15218836 209..332 100 -> Plus
2R 15221429..15221565 333..469 100 -> Plus
2R 15221728..15221823 470..565 100 -> Plus
2R 15222044..15222425 566..947 100 -> Plus
2R 15223042..15223159 1434..1551 100 -> Plus
2R 15223221..15223326 1552..1657 100 -> Plus
2R 15223384..15223545 1658..1821 98   Plus
2R 15222497..15222982 948..1433 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:49 Download gff for BO17819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11105969..11106160 17..208 100 -> Plus
arm_2R 11106218..11106341 209..332 100 -> Plus
arm_2R 11108934..11109070 333..469 100 -> Plus
arm_2R 11109233..11109328 470..565 100 -> Plus
arm_2R 11109549..11109930 566..947 100 -> Plus
arm_2R 11110002..11110487 948..1433 100 -> Plus
arm_2R 11110547..11110664 1434..1551 100 -> Plus
arm_2R 11110726..11110831 1552..1657 100 -> Plus
arm_2R 11110889..11111050 1658..1821 98   Plus

BO17819.pep Sequence

Translation from 16 to 1837

> BO17819.pep
MSLPAEEEDLADTVAKYDSIELKSIQDLETCEQQQLLQYVEKLHGIIRKY
DTKLASYKQKLLHYVSREEKVSCDKASQATESELQECQYSMENDEDTNKK
DQPNDLSATDAFSFVDEMRQAAKHAENLNNFVYEHTSGMYYDPKTGYYYN
AEYGLYYDGNNGCYYSYDHAKDSYEFHSQAQVQANDAAKPESEDEDLEVQ
FDELGGVITDHETLKKIKAEKQKAKDQAEKSKRKAKKKKSKKHSKKRSKK
ERRHKSKKRHRHSDDERSNDAEEGELSQSSDSSSDSSNEDSSSNTEDSSV
PVFKAAGRFQDIAKKYPPSLRIIVQETNVESLKVGSLHLITYKGGSLGRE
GAHDVIIPDVNVSKCHLKFKYENKLGIYQCLDLGSRNGTILNGSPMSSDA
MDLVHGSVITLGQTRLLCHVHEGNSTCGLCEPGLLIENSPPVVAAVASST
ASVLSHKEQLKKLQRKYGLENEKFVDTSGNGQSNYNDRAATRRVQVGSST
DKEKTEVACVNTEIGSSNKGFKMLSKLGWQKGEKLGKTNASAGLLEPINV
VANEGTSGLGNSDPVLSSSRTIDKRKLANLKITQARYQRASDMFGQSDDS
DASFLDH

BO17819.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-PA 601 CG8079-PA 1..601 1..601 3101 100 Plus
CG8079-PB 599 CG8079-PB 1..599 1..601 3079 99.7 Plus
CG8079-PC 501 CG8079-PC 211..501 311..601 1490 100 Plus
CG8079-PC 501 CG8079-PC 1..183 1..183 974 100 Plus
CG8079-PE 229 CG8079-PE 1..183 1..183 974 100 Plus
CG8079-PD 250 CG8079-PD 1..183 1..183 974 100 Plus