Clone BO17820 Report

Search the DGRC for BO17820

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG18177-RB
Protein status:BO17820.pep: validated full length
Sequenced Size:799

Clone Sequence Records

BO17820.3prime Sequence

797 bp (770 high quality bases) assembled on 2006-10-13

> BO17820.3prime
ATGGTCTAGAAAGCTTGCCTCGATAAAGTTGAAGCGAGTGAGCAGCTTGT
GGTAGAACCACCGCACCACCTGCTGGACTCGTCCGGCCAGCCAGGCGCAA
AGGCTGCTGGTGTGGCGCACCATCGACGCGTAGTGCTTGATGTGATCTAA
TAAAGTCCAGGGTGGATGGCCGCCGTTAATGTAGTTCACATAGGTGAATC
CGTCCTTGCCCTTGCCCCGTATATTGTAGTAGTAGGGCAGGAATGAGTGA
AGCGTAAATCTTCTCTTCTCGTAGAAAAATATGGCAGGTTGATTGGTGGT
CAGCGTGTGCAGGAAGATCGCCTTCACCGAATGCCGCTCGGCCGTCGTCA
GGTGGTTCATTAGCGCGTCCAACAGCAGCGATCCGATGCCATTGCGTCGA
TGCGAACGATGGACGCCCAGCGACAGTATATAACCGACATCGGCGGAACG
ACCCATCGAGTCCGGCAGGATGCCCTTGTCCTCCTTGTTCACATTTCGAT
AGGGTTTGATTTCGGCAACGATTAAACCAATTATGGCCAGATTATATACA
GCTGCCAGCGCAAAGAAGCGCGTGCTTGAGGTAATATCCTCATACCATGA
TAGTGGATAGTCGATTGGAAACCATTCTTGGCACAGCTGTCGCACCTCCG
TCAGATCGTCGGGCACCAGGAACCTTAGCTGCACATCGTTAATCGAGCAC
AGCGGTACGTGTTCGCAGTCCACACGCGTACTCTCGCTACTGGGCGGCGC
ACTGTGTTTGTTGTAGAGTGTGAATTGTGCCATGTCGACTGATAACT

BO17820.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18177-PB 768 CG18177-RB 1..765 783..19 3825 100 Minus
CG18177-PA 831 CG18177-RA 365..828 482..19 2320 100 Minus
CG18177-PA 831 CG18177-RA 1..304 783..480 1520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RB 2231 CG18177-RB 659..1423 783..19 3825 100 Minus
Naa60-RC 1378 CG18177-RC 659..1298 783..144 3185 99.8 Minus
Naa60-RA 2294 CG18177-RA 1023..1486 482..19 2320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9728211..9728433 482..260 1115 100 Minus
3L 28110227 3L 9727983..9728150 647..480 840 100 Minus
3L 28110227 3L 9728713..9728842 148..19 650 100 Minus
3L 28110227 3L 9727787..9727909 766..644 615 100 Minus
3L 28110227 3L 9728502..9728619 261..144 575 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 21:10:07 has no hits.

BO17820.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:44 Download gff for BO17820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18177-PB 1..768 16..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:24 Download gff for BO17820.3prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 652..1430 12..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:59 Download gff for BO17820.3prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 652..1430 12..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:59 Download gff for BO17820.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9728715..9728849 12..146 97   Minus
3L 9727787..9727907 646..766 100 -> Minus
3L 9727985..9728149 481..645 100 -> Minus
3L 9728213..9728433 260..480 100 -> Minus
3L 9728504..9728616 147..259 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:24 Download gff for BO17820.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9720887..9721007 646..766 100 -> Minus
arm_3L 9721085..9721249 481..645 100 -> Minus
arm_3L 9721313..9721533 260..480 100 -> Minus
arm_3L 9721604..9721716 147..259 99 -> Minus
arm_3L 9721815..9721949 12..146 97   Minus

BO17820.5prime Sequence

790 bp (738 high quality bases) assembled on 2006-10-13

> BO17820.5prime
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCGGACTCGATGGGTC
GTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCATCGTTCGCAT
CGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAATGAACCACCT
GACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGCACACGCTGA
CCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGATTTACGCTT
CACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGGCAAGGACGG
ATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCTGGACTTTAT
TAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACCAGCAGCCTT
TGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTGGTTCTACCA
CAAGCTGCTCACTCGCTTCAACTTTATCGAGGCAAGCTTT

BO17820.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18177-PB 768 CG18177-RB 1..765 17..781 3825 100 Plus
CG18177-PA 831 CG18177-RA 365..828 318..781 2320 100 Plus
CG18177-PA 831 CG18177-RA 1..304 17..320 1520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RB 2231 CG18177-RB 659..1423 17..781 3825 100 Plus
Naa60-RC 1378 CG18177-RC 659..1298 17..656 3185 99.8 Plus
Naa60-RA 2294 CG18177-RA 1023..1486 318..781 2320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9728211..9728433 318..540 1115 100 Plus
3L 28110227 3L 9727983..9728150 153..320 840 100 Plus
3L 28110227 3L 9728713..9728842 652..781 650 100 Plus
3L 28110227 3L 9727787..9727909 34..156 615 100 Plus
3L 28110227 3L 9728502..9728619 539..656 575 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 17:37:32 has no hits.

BO17820.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:46 Download gff for BO17820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18177-PB 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:06 Download gff for BO17820.5prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 652..1430 9..790 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:17 Download gff for BO17820.5prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 652..1430 9..790 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:17 Download gff for BO17820.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9728213..9728433 320..540 100 -> Plus
3L 9728504..9728616 541..653 99 -> Plus
3L 9727787..9727907 34..154 100 -> Plus
3L 9728715..9728849 654..790 96   Plus
3L 9727985..9728149 155..319 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:06 Download gff for BO17820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9720887..9721007 34..154 100 -> Plus
arm_3L 9721085..9721249 155..319 100 -> Plus
arm_3L 9721313..9721533 320..540 100 -> Plus
arm_3L 9721604..9721716 541..653 99 -> Plus
arm_3L 9721815..9721949 654..790 96   Plus

BO17820.complete Sequence

799 bp assembled on 2006-10-11

GenBank Submission: FJ634229

> BO17820.complete
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCGGACTCGATGGGTC
GTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCATCGTTCGCAT
CGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAATGAACCACCT
GACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGCACACGCTGA
CCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGATTTACGCTT
CACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGGCAAGGACGG
ATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCTGGACTTTAT
TAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACCAGCAGCCTT
TGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTGGTTCTACCA
CAAGCTGCTCACTCGCTTCAACTTTATCGAGGCAAGCTTTCTAGACCAT

BO17820.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RB 768 CG18177-PB 1..765 17..781 3825 100 Plus
Naa60-RC 720 CG18177-PC 1..640 17..656 3185 99.8 Plus
Naa60-RA 831 CG18177-PA 365..828 318..781 2320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RB 2231 CG18177-RB 659..1423 17..781 3825 100 Plus
Naa60-RC 1378 CG18177-RC 659..1298 17..656 3185 99.8 Plus
Naa60-RA 2294 CG18177-RA 1023..1486 318..781 2320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9728211..9728433 318..540 1115 100 Plus
3L 28110227 3L 9727983..9728150 153..320 840 100 Plus
3L 28110227 3L 9728713..9728842 652..781 650 100 Plus
3L 28110227 3L 9727787..9727909 34..156 615 100 Plus
3L 28110227 3L 9728502..9728619 539..656 575 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 19:44:45 has no hits.

BO17820.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:27 Download gff for BO17820.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:13 Download gff for BO17820.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 617..1395 9..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:39 Download gff for BO17820.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 659..1423 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:27 Download gff for BO17820.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RB 617..1395 9..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:32 Download gff for BO17820.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RB 659..1423 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:32 Download gff for BO17820.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9728213..9728433 320..540 100 -> Plus
3L 9728504..9728616 541..653 99 -> Plus
3L 9728715..9728842 654..783 98   Plus
3L 9727553..9727569 17..33 100 -> Plus
3L 9727787..9727907 34..154 100 -> Plus
3L 9727985..9728149 155..319 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:39 Download gff for BO17820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9721085..9721249 155..319 100 -> Plus
arm_3L 9721313..9721533 320..540 100 -> Plus
arm_3L 9721604..9721716 541..653 99 -> Plus
arm_3L 9721815..9721942 654..783 98   Plus
arm_3L 9720653..9720669 17..33 100 -> Plus
arm_3L 9720887..9721007 34..154 100 -> Plus

BO17820.pep Sequence

Translation from 16 to 799

> BO17820.pep
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EDKGILPDSMGRSADVGYILSLGVHRSHRRNGIGSLLLDALMNHLTTAER
HSVKAIFLHTLTTNQPAIFFYEKRRFTLHSFLPYYYNIRGKGKDGFTYVN
YINGGHPPWTLLDHIKHYASMVRHTSSLCAWLAGRVQQVVRWFYHKLLTR
FNFIEASFLDH

BO17820.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-PB 255 CG18177-PB 1..255 1..255 1370 100 Plus
Naa60-PA 276 CG18177-PA 1..276 1..255 1338 92.4 Plus
Naa60-PC 239 CG18177-PC 1..218 1..218 1134 97.7 Plus