Clone Sequence Records
BO17820.3prime Sequence
797 bp (770 high quality bases) assembled on 2006-10-13
> BO17820.3prime
ATGGTCTAGAAAGCTTGCCTCGATAAAGTTGAAGCGAGTGAGCAGCTTGT
GGTAGAACCACCGCACCACCTGCTGGACTCGTCCGGCCAGCCAGGCGCAA
AGGCTGCTGGTGTGGCGCACCATCGACGCGTAGTGCTTGATGTGATCTAA
TAAAGTCCAGGGTGGATGGCCGCCGTTAATGTAGTTCACATAGGTGAATC
CGTCCTTGCCCTTGCCCCGTATATTGTAGTAGTAGGGCAGGAATGAGTGA
AGCGTAAATCTTCTCTTCTCGTAGAAAAATATGGCAGGTTGATTGGTGGT
CAGCGTGTGCAGGAAGATCGCCTTCACCGAATGCCGCTCGGCCGTCGTCA
GGTGGTTCATTAGCGCGTCCAACAGCAGCGATCCGATGCCATTGCGTCGA
TGCGAACGATGGACGCCCAGCGACAGTATATAACCGACATCGGCGGAACG
ACCCATCGAGTCCGGCAGGATGCCCTTGTCCTCCTTGTTCACATTTCGAT
AGGGTTTGATTTCGGCAACGATTAAACCAATTATGGCCAGATTATATACA
GCTGCCAGCGCAAAGAAGCGCGTGCTTGAGGTAATATCCTCATACCATGA
TAGTGGATAGTCGATTGGAAACCATTCTTGGCACAGCTGTCGCACCTCCG
TCAGATCGTCGGGCACCAGGAACCTTAGCTGCACATCGTTAATCGAGCAC
AGCGGTACGTGTTCGCAGTCCACACGCGTACTCTCGCTACTGGGCGGCGC
ACTGTGTTTGTTGTAGAGTGTGAATTGTGCCATGTCGACTGATAACT
BO17820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18177-PB | 768 | CG18177-RB | 1..765 | 783..19 | 3825 | 100 | Minus |
CG18177-PA | 831 | CG18177-RA | 365..828 | 482..19 | 2320 | 100 | Minus |
CG18177-PA | 831 | CG18177-RA | 1..304 | 783..480 | 1520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RB | 2231 | CG18177-RB | 659..1423 | 783..19 | 3825 | 100 | Minus |
Naa60-RC | 1378 | CG18177-RC | 659..1298 | 783..144 | 3185 | 99.8 | Minus |
Naa60-RA | 2294 | CG18177-RA | 1023..1486 | 482..19 | 2320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9728211..9728433 | 482..260 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 9727983..9728150 | 647..480 | 840 | 100 | Minus |
3L | 28110227 | 3L | 9728713..9728842 | 148..19 | 650 | 100 | Minus |
3L | 28110227 | 3L | 9727787..9727909 | 766..644 | 615 | 100 | Minus |
3L | 28110227 | 3L | 9728502..9728619 | 261..144 | 575 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:10:07 has no hits.
BO17820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:44 Download gff for
BO17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-PB | 1..768 | 16..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:24 Download gff for
BO17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 652..1430 | 12..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:59 Download gff for
BO17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 652..1430 | 12..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:59 Download gff for
BO17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9728715..9728849 | 12..146 | 97 | | Minus |
3L | 9727787..9727907 | 646..766 | 100 | -> | Minus |
3L | 9727985..9728149 | 481..645 | 100 | -> | Minus |
3L | 9728213..9728433 | 260..480 | 100 | -> | Minus |
3L | 9728504..9728616 | 147..259 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:24 Download gff for
BO17820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9720887..9721007 | 646..766 | 100 | -> | Minus |
arm_3L | 9721085..9721249 | 481..645 | 100 | -> | Minus |
arm_3L | 9721313..9721533 | 260..480 | 100 | -> | Minus |
arm_3L | 9721604..9721716 | 147..259 | 99 | -> | Minus |
arm_3L | 9721815..9721949 | 12..146 | 97 | | Minus |
BO17820.5prime Sequence
790 bp (738 high quality bases) assembled on 2006-10-13
> BO17820.5prime
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCGGACTCGATGGGTC
GTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCATCGTTCGCAT
CGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAATGAACCACCT
GACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGCACACGCTGA
CCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGATTTACGCTT
CACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGGCAAGGACGG
ATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCTGGACTTTAT
TAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACCAGCAGCCTT
TGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTGGTTCTACCA
CAAGCTGCTCACTCGCTTCAACTTTATCGAGGCAAGCTTT
BO17820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18177-PB | 768 | CG18177-RB | 1..765 | 17..781 | 3825 | 100 | Plus |
CG18177-PA | 831 | CG18177-RA | 365..828 | 318..781 | 2320 | 100 | Plus |
CG18177-PA | 831 | CG18177-RA | 1..304 | 17..320 | 1520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RB | 2231 | CG18177-RB | 659..1423 | 17..781 | 3825 | 100 | Plus |
Naa60-RC | 1378 | CG18177-RC | 659..1298 | 17..656 | 3185 | 99.8 | Plus |
Naa60-RA | 2294 | CG18177-RA | 1023..1486 | 318..781 | 2320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9728211..9728433 | 318..540 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 9727983..9728150 | 153..320 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9728713..9728842 | 652..781 | 650 | 100 | Plus |
3L | 28110227 | 3L | 9727787..9727909 | 34..156 | 615 | 100 | Plus |
3L | 28110227 | 3L | 9728502..9728619 | 539..656 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:37:32 has no hits.
BO17820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:46 Download gff for
BO17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-PB | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:06 Download gff for
BO17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 652..1430 | 9..790 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:17 Download gff for
BO17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 652..1430 | 9..790 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:17 Download gff for
BO17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9728213..9728433 | 320..540 | 100 | -> | Plus |
3L | 9728504..9728616 | 541..653 | 99 | -> | Plus |
3L | 9727787..9727907 | 34..154 | 100 | -> | Plus |
3L | 9728715..9728849 | 654..790 | 96 | | Plus |
3L | 9727985..9728149 | 155..319 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:06 Download gff for
BO17820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9720887..9721007 | 34..154 | 100 | -> | Plus |
arm_3L | 9721085..9721249 | 155..319 | 100 | -> | Plus |
arm_3L | 9721313..9721533 | 320..540 | 100 | -> | Plus |
arm_3L | 9721604..9721716 | 541..653 | 99 | -> | Plus |
arm_3L | 9721815..9721949 | 654..790 | 96 | | Plus |
BO17820.complete Sequence
799 bp assembled on 2006-10-11
GenBank Submission: FJ634229
> BO17820.complete
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGACAAGGGCATCCTGCCGGACTCGATGGGTC
GTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCATCGTTCGCAT
CGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAATGAACCACCT
GACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGCACACGCTGA
CCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGATTTACGCTT
CACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGGCAAGGACGG
ATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCTGGACTTTAT
TAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACCAGCAGCCTT
TGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTGGTTCTACCA
CAAGCTGCTCACTCGCTTCAACTTTATCGAGGCAAGCTTTCTAGACCAT
BO17820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RB | 768 | CG18177-PB | 1..765 | 17..781 | 3825 | 100 | Plus |
Naa60-RC | 720 | CG18177-PC | 1..640 | 17..656 | 3185 | 99.8 | Plus |
Naa60-RA | 831 | CG18177-PA | 365..828 | 318..781 | 2320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RB | 2231 | CG18177-RB | 659..1423 | 17..781 | 3825 | 100 | Plus |
Naa60-RC | 1378 | CG18177-RC | 659..1298 | 17..656 | 3185 | 99.8 | Plus |
Naa60-RA | 2294 | CG18177-RA | 1023..1486 | 318..781 | 2320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9728211..9728433 | 318..540 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 9727983..9728150 | 153..320 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9728713..9728842 | 652..781 | 650 | 100 | Plus |
3L | 28110227 | 3L | 9727787..9727909 | 34..156 | 615 | 100 | Plus |
3L | 28110227 | 3L | 9728502..9728619 | 539..656 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:44:45 has no hits.
BO17820.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:27 Download gff for
BO17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RB | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:13 Download gff for
BO17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RB | 617..1395 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:39 Download gff for
BO17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 659..1423 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:27 Download gff for
BO17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RB | 617..1395 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:32 Download gff for
BO17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RB | 659..1423 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:32 Download gff for
BO17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9728213..9728433 | 320..540 | 100 | -> | Plus |
3L | 9728504..9728616 | 541..653 | 99 | -> | Plus |
3L | 9728715..9728842 | 654..783 | 98 | | Plus |
3L | 9727553..9727569 | 17..33 | 100 | -> | Plus |
3L | 9727787..9727907 | 34..154 | 100 | -> | Plus |
3L | 9727985..9728149 | 155..319 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:39 Download gff for
BO17820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9721085..9721249 | 155..319 | 100 | -> | Plus |
arm_3L | 9721313..9721533 | 320..540 | 100 | -> | Plus |
arm_3L | 9721604..9721716 | 541..653 | 99 | -> | Plus |
arm_3L | 9721815..9721942 | 654..783 | 98 | | Plus |
arm_3L | 9720653..9720669 | 17..33 | 100 | -> | Plus |
arm_3L | 9720887..9721007 | 34..154 | 100 | -> | Plus |
BO17820.pep Sequence
Translation from 16 to 799
> BO17820.pep
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EDKGILPDSMGRSADVGYILSLGVHRSHRRNGIGSLLLDALMNHLTTAER
HSVKAIFLHTLTTNQPAIFFYEKRRFTLHSFLPYYYNIRGKGKDGFTYVN
YINGGHPPWTLLDHIKHYASMVRHTSSLCAWLAGRVQQVVRWFYHKLLTR
FNFIEASFLDH
BO17820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-PB | 255 | CG18177-PB | 1..255 | 1..255 | 1370 | 100 | Plus |
Naa60-PA | 276 | CG18177-PA | 1..276 | 1..255 | 1338 | 92.4 | Plus |
Naa60-PC | 239 | CG18177-PC | 1..218 | 1..218 | 1134 | 97.7 | Plus |