Clone Sequence Records
BO17821.complete Sequence
1057 bp assembled on 2010-07-06
GenBank Submission: KX794150
> BO17821.complete
GAAGTTATCAGTCGACATGGAAGCAAATTTGGAGAACGGTCAGAAAACGA
TCGCCTCGACAAGCAAATCGCATTCGCAGCGTCAAACAACATCTCGACGG
CGGCAAAACGACAGCGATGTGGCCGGAGGCGTGGGAATCACCGGTGGGGG
AGTCGTCATTTTGCCGCAGCACGTGCTTAACGAACTCTACCACAACTACT
CCATCAAACAACGCCGCAGTGGATTGAAGTGGTTTGTCTTTGCGGCCGCG
TTGTTTAACATATGGACCATCGGAATTCCCTGGGATCAGTCGGCCCCTAC
GAGAGTGATCAACTGTTGTATGCTGTTAGCTTACTTGGCATTGACAGCGC
TCCTTCATATTGGACGCCGTTCTGATAAACCGGCACTGAGGCGCTTCCAC
CAAATACTCCTGATTATTGTGCCACGGGCACTGTGGCTATTAAGCATTCT
TCATTTTACCGTTTATGTTATTCTGCAGCCTAGTTTTTCTCCAAGGGACC
TACTTGGCTGGGCCATCCTTCTAAATTTCTTGGTCTATGTGACGCTGCCA
TTACAGCTGATTTTTCTTGGTCTGTCGATTGGATGTATCACATATTTCAT
TTGCCTCAGTCTCCCTGTTGGTTATTCTCACTGGGACTCGCTGCTCTCGA
ACCAATTAGCGGCTAATGCAGTTTTGATAGCCACGGCAGCGCTGATAGGC
CTTTTGTACTACTTTATGGGTGAGGCCAAGCAGAAACGAGCCTTTCTCGA
GGCCAAAAAGAGCCTTGAAGTTAAAATGGTCATAGAGGAACAGTCGGCCG
AACAGGAGCGTCTGCTATTGTCTGTGCTGCCAAAGCATGTGGCTATTAAG
ATGCGGGAAGATTTGGGATCATCCAGTTCCGAGGCTTTTAAAAAAATTTA
CATGAGTCGGCACGAGAATGTAAGAAATATCAACAATTGCGCATTAAGAT
TCTTGGCGATTGCTACTACTGTATTAGCGGTGCCCCTGATGAGCGTCCAG
ATCACGCCGTCCTGTGTGTGCACATGGGACTCTCCATGGGCAAGCTTTCT
AGACCAT
BO17821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ac3-RC | 1026 | CG1506-PC | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Ac3-RA | 3504 | CG1506-PA | 1..908 | 17..924 | 4540 | 100 | Plus |
Ac3-RA | 3504 | CG1506-PA | 1019..1135 | 923..1039 | 585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ac3-RC | 2126 | CG1506-RC | 409..1435 | 13..1039 | 5120 | 99.9 | Plus |
Ac3-RA | 5055 | CG1506-RA | 409..1320 | 13..924 | 4545 | 99.9 | Plus |
Ac3-RA | 5055 | CG1506-RA | 1431..1547 | 923..1039 | 585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21634724..21635036 | 494..806 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 21633623..21633915 | 13..305 | 1450 | 99.7 | Plus |
2L | 23513712 | 2L | 21634418..21634610 | 304..496 | 965 | 100 | Plus |
2L | 23513712 | 2L | 21635090..21635210 | 804..924 | 605 | 100 | Plus |
2L | 23513712 | 2L | 21637657..21637773 | 923..1039 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:49:52 has no hits.
BO17821.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-06 12:39:32 Download gff for
BO17821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ac3-RC | 123..1145 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:55 Download gff for
BO17821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ac3-RC | 413..1435 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:37 Download gff for
BO17821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ac3-RC | 413..1435 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:37 Download gff for
BO17821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21637659..21637773 | 925..1041 | 98 | | Plus |
2L | 21633627..21633915 | 17..305 | 100 | -> | Plus |
2L | 21634726..21635035 | 496..805 | 100 | -> | Plus |
2L | 21634420..21634609 | 306..495 | 100 | -> | Plus |
2L | 21635092..21635210 | 806..924 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:55 Download gff for
BO17821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21633627..21633915 | 17..305 | 100 | -> | Plus |
arm_2L | 21634420..21634609 | 306..495 | 100 | -> | Plus |
arm_2L | 21634726..21635035 | 496..805 | 100 | -> | Plus |
arm_2L | 21635092..21635210 | 806..924 | 100 | -> | Plus |
arm_2L | 21637659..21637773 | 925..1041 | 98 | | Plus |
BO17821.3prime Sequence
738 bp (-60 high quality bases) assembled on 2010-02-21
> BO17821.3prime
ATGGACGGCGTGATCTTGGACGCTCATCAGGGGCACCGCTAATACAGTAG
TAGCCCTCGCGAAGAATCTTAATGCGCAATTGTTGATATTTCTTACATTC
TCGTGCCGACTCATGTAAATTTTTTTAAAAGCCTCGGAACTGGATGATCC
CAAATCTTCCCGCATCTTAATAGCCACATGCTTTGGCAGCACAGACAATA
ACAGACGCTCCTGTTCGGCCGACTGTTCCTCTATGACCATTTTAACTTCA
AGGCTCTTTTTGGCCTCGAGAAAGGCTCGTTTCTGCTTGGCCTCACCCAT
AAAGTAGTACAAAAGGCCTATCAGCGCTGCCGTGGCTATCAAAACTGCAT
TAGCCGCTAATTGGTTCGAGAGCAGCGAGTCCCAGTGAGAATAACCAACA
GGGAGACTGAGGCAAATGAAATATGTGATACATCCAATCGACAGACCAAG
AAAAATCAGCTGTAATGGCAGCGTCACATAGACCAAGAAATTTAGAAGGA
TGGCCCAGCCAAGTATGTCCCTTGGAGAAAAACTTAGGCTGCAGAATAAC
ATAAACGGTAAAATGATAAATGCTTAATAGCCACAGTGCCCGTGGCACAA
TAATCCAGGATATTTGGTGGAAGCGCCTCCAGTGCCGGTTTATCAAAACG
GCGTCCAATATAAAGGAGCGCTGTCAATGCCTATTAAACCTAACCTCAAT
AATACAGTTGATCTCTCTTCGATGGGCCCGACTGATCC
BO17821.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ac3-RC | 2126 | CG1506-RC | 679..1408 | 738..3 | 3185 | 96.2 | Minus |
Ac3-RA | 5055 | CG1506-RA | 679..1320 | 738..92 | 2810 | 96.3 | Minus |
Ac3-RA | 5055 | CG1506-RA | 1431..1520 | 93..3 | 385 | 95.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21634724..21635036 | 522..210 | 1550 | 99.7 | Minus |
2L | 23513712 | 2L | 21634451..21634610 | 681..520 | 590 | 93.8 | Minus |
2L | 23513712 | 2L | 21635090..21635210 | 212..92 | 590 | 99.2 | Minus |
2L | 23513712 | 2L | 21637657..21637746 | 93..3 | 360 | 95.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:48:35 has no hits.
BO17821.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:04:57 Download gff for
BO17821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ac3-RC | 431..1119 | 1..694 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 08:40:23 Download gff for
BO17821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ac3-RC | 721..1409 | 1..694 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:57 Download gff for
BO17821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ac3-RC | 721..1409 | 1..694 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:57 Download gff for
BO17821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21634439..21634609 | 521..694 | 93 | -> | Minus |
2L | 21634726..21635035 | 211..520 | 99 | -> | Minus |
2L | 21635092..21635210 | 92..210 | 99 | -> | Minus |
2L | 21637659..21637747 | 1..91 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 08:40:23 Download gff for
BO17821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21634439..21634609 | 521..694 | 93 | -> | Minus |
arm_2L | 21634726..21635035 | 211..520 | 99 | -> | Minus |
arm_2L | 21635092..21635210 | 92..210 | 99 | -> | Minus |
arm_2L | 21637659..21637747 | 1..91 | 94 | | Minus |
BO17821.pep Sequence
Translation from 16 to 1057
> BO17821.pep
MEANLENGQKTIASTSKSHSQRQTTSRRRQNDSDVAGGVGITGGGVVILP
QHVLNELYHNYSIKQRRSGLKWFVFAAALFNIWTIGIPWDQSAPTRVINC
CMLLAYLALTALLHIGRRSDKPALRRFHQILLIIVPRALWLLSILHFTVY
VILQPSFSPRDLLGWAILLNFLVYVTLPLQLIFLGLSIGCITYFICLSLP
VGYSHWDSLLSNQLAANAVLIATAALIGLLYYFMGEAKQKRAFLEAKKSL
EVKMVIEEQSAEQERLLLSVLPKHVAIKMREDLGSSSSEAFKKIYMSRHE
NVRNINNCALRFLAIATTVLAVPLMSVQITPSCVCTWDSPWASFLDH
BO17821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ac3-PC | 341 | CG1506-PC | 1..341 | 1..341 | 1748 | 100 | Plus |
Ac3-PA | 1167 | CG1506-PA | 1..327 | 1..327 | 1549 | 94.2 | Plus |
CG43373-PB | 1240 | CG42513-PB | 547..730 | 121..302 | 225 | 32.3 | Plus |
CG43373-PC | 1854 | CG42513-PA | 547..730 | 121..302 | 225 | 32.3 | Plus |
rut-PE | 1391 | CG9533-PE | 137..274 | 167..302 | 207 | 36 | Plus |