Clone BO17821 Report

Search the DGRC for BO17821

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptAc3-RC
Protein status:BO17821.pep: Imported from assembly
Sequenced Size:1057

Clone Sequence Records

BO17821.complete Sequence

1057 bp assembled on 2010-07-06

GenBank Submission: KX794150

> BO17821.complete
GAAGTTATCAGTCGACATGGAAGCAAATTTGGAGAACGGTCAGAAAACGA
TCGCCTCGACAAGCAAATCGCATTCGCAGCGTCAAACAACATCTCGACGG
CGGCAAAACGACAGCGATGTGGCCGGAGGCGTGGGAATCACCGGTGGGGG
AGTCGTCATTTTGCCGCAGCACGTGCTTAACGAACTCTACCACAACTACT
CCATCAAACAACGCCGCAGTGGATTGAAGTGGTTTGTCTTTGCGGCCGCG
TTGTTTAACATATGGACCATCGGAATTCCCTGGGATCAGTCGGCCCCTAC
GAGAGTGATCAACTGTTGTATGCTGTTAGCTTACTTGGCATTGACAGCGC
TCCTTCATATTGGACGCCGTTCTGATAAACCGGCACTGAGGCGCTTCCAC
CAAATACTCCTGATTATTGTGCCACGGGCACTGTGGCTATTAAGCATTCT
TCATTTTACCGTTTATGTTATTCTGCAGCCTAGTTTTTCTCCAAGGGACC
TACTTGGCTGGGCCATCCTTCTAAATTTCTTGGTCTATGTGACGCTGCCA
TTACAGCTGATTTTTCTTGGTCTGTCGATTGGATGTATCACATATTTCAT
TTGCCTCAGTCTCCCTGTTGGTTATTCTCACTGGGACTCGCTGCTCTCGA
ACCAATTAGCGGCTAATGCAGTTTTGATAGCCACGGCAGCGCTGATAGGC
CTTTTGTACTACTTTATGGGTGAGGCCAAGCAGAAACGAGCCTTTCTCGA
GGCCAAAAAGAGCCTTGAAGTTAAAATGGTCATAGAGGAACAGTCGGCCG
AACAGGAGCGTCTGCTATTGTCTGTGCTGCCAAAGCATGTGGCTATTAAG
ATGCGGGAAGATTTGGGATCATCCAGTTCCGAGGCTTTTAAAAAAATTTA
CATGAGTCGGCACGAGAATGTAAGAAATATCAACAATTGCGCATTAAGAT
TCTTGGCGATTGCTACTACTGTATTAGCGGTGCCCCTGATGAGCGTCCAG
ATCACGCCGTCCTGTGTGTGCACATGGGACTCTCCATGGGCAAGCTTTCT
AGACCAT

BO17821.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ac3-RC 1026 CG1506-PC 1..1023 17..1039 5115 100 Plus
Ac3-RA 3504 CG1506-PA 1..908 17..924 4540 100 Plus
Ac3-RA 3504 CG1506-PA 1019..1135 923..1039 585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ac3-RC 2126 CG1506-RC 409..1435 13..1039 5120 99.9 Plus
Ac3-RA 5055 CG1506-RA 409..1320 13..924 4545 99.9 Plus
Ac3-RA 5055 CG1506-RA 1431..1547 923..1039 585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21634724..21635036 494..806 1565 100 Plus
2L 23513712 2L 21633623..21633915 13..305 1450 99.7 Plus
2L 23513712 2L 21634418..21634610 304..496 965 100 Plus
2L 23513712 2L 21635090..21635210 804..924 605 100 Plus
2L 23513712 2L 21637657..21637773 923..1039 585 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:49:52 has no hits.

BO17821.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-06 12:39:32 Download gff for BO17821.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 123..1145 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:55 Download gff for BO17821.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 413..1435 17..1041 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:37 Download gff for BO17821.complete
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 413..1435 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:37 Download gff for BO17821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21637659..21637773 925..1041 98   Plus
2L 21633627..21633915 17..305 100 -> Plus
2L 21634726..21635035 496..805 100 -> Plus
2L 21634420..21634609 306..495 100 -> Plus
2L 21635092..21635210 806..924 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:55 Download gff for BO17821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21633627..21633915 17..305 100 -> Plus
arm_2L 21634420..21634609 306..495 100 -> Plus
arm_2L 21634726..21635035 496..805 100 -> Plus
arm_2L 21635092..21635210 806..924 100 -> Plus
arm_2L 21637659..21637773 925..1041 98   Plus

BO17821.3prime Sequence

738 bp (-60 high quality bases) assembled on 2010-02-21

> BO17821.3prime
ATGGACGGCGTGATCTTGGACGCTCATCAGGGGCACCGCTAATACAGTAG
TAGCCCTCGCGAAGAATCTTAATGCGCAATTGTTGATATTTCTTACATTC
TCGTGCCGACTCATGTAAATTTTTTTAAAAGCCTCGGAACTGGATGATCC
CAAATCTTCCCGCATCTTAATAGCCACATGCTTTGGCAGCACAGACAATA
ACAGACGCTCCTGTTCGGCCGACTGTTCCTCTATGACCATTTTAACTTCA
AGGCTCTTTTTGGCCTCGAGAAAGGCTCGTTTCTGCTTGGCCTCACCCAT
AAAGTAGTACAAAAGGCCTATCAGCGCTGCCGTGGCTATCAAAACTGCAT
TAGCCGCTAATTGGTTCGAGAGCAGCGAGTCCCAGTGAGAATAACCAACA
GGGAGACTGAGGCAAATGAAATATGTGATACATCCAATCGACAGACCAAG
AAAAATCAGCTGTAATGGCAGCGTCACATAGACCAAGAAATTTAGAAGGA
TGGCCCAGCCAAGTATGTCCCTTGGAGAAAAACTTAGGCTGCAGAATAAC
ATAAACGGTAAAATGATAAATGCTTAATAGCCACAGTGCCCGTGGCACAA
TAATCCAGGATATTTGGTGGAAGCGCCTCCAGTGCCGGTTTATCAAAACG
GCGTCCAATATAAAGGAGCGCTGTCAATGCCTATTAAACCTAACCTCAAT
AATACAGTTGATCTCTCTTCGATGGGCCCGACTGATCC

BO17821.3prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ac3-RC 2126 CG1506-RC 679..1408 738..3 3185 96.2 Minus
Ac3-RA 5055 CG1506-RA 679..1320 738..92 2810 96.3 Minus
Ac3-RA 5055 CG1506-RA 1431..1520 93..3 385 95.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21634724..21635036 522..210 1550 99.7 Minus
2L 23513712 2L 21634451..21634610 681..520 590 93.8 Minus
2L 23513712 2L 21635090..21635210 212..92 590 99.2 Minus
2L 23513712 2L 21637657..21637746 93..3 360 95.6 Minus
Blast to na_te.dros performed on 2015-02-12 12:48:35 has no hits.

BO17821.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:04:57 Download gff for BO17821.3prime
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 431..1119 1..694 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 08:40:23 Download gff for BO17821.3prime
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 721..1409 1..694 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:31:57 Download gff for BO17821.3prime
Subject Subject Range Query Range Percent Splice Strand
Ac3-RC 721..1409 1..694 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:31:57 Download gff for BO17821.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21634439..21634609 521..694 93 -> Minus
2L 21634726..21635035 211..520 99 -> Minus
2L 21635092..21635210 92..210 99 -> Minus
2L 21637659..21637747 1..91 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 08:40:23 Download gff for BO17821.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21634439..21634609 521..694 93 -> Minus
arm_2L 21634726..21635035 211..520 99 -> Minus
arm_2L 21635092..21635210 92..210 99 -> Minus
arm_2L 21637659..21637747 1..91 94   Minus

BO17821.pep Sequence

Translation from 16 to 1057

> BO17821.pep
MEANLENGQKTIASTSKSHSQRQTTSRRRQNDSDVAGGVGITGGGVVILP
QHVLNELYHNYSIKQRRSGLKWFVFAAALFNIWTIGIPWDQSAPTRVINC
CMLLAYLALTALLHIGRRSDKPALRRFHQILLIIVPRALWLLSILHFTVY
VILQPSFSPRDLLGWAILLNFLVYVTLPLQLIFLGLSIGCITYFICLSLP
VGYSHWDSLLSNQLAANAVLIATAALIGLLYYFMGEAKQKRAFLEAKKSL
EVKMVIEEQSAEQERLLLSVLPKHVAIKMREDLGSSSSEAFKKIYMSRHE
NVRNINNCALRFLAIATTVLAVPLMSVQITPSCVCTWDSPWASFLDH

BO17821.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ac3-PC 341 CG1506-PC 1..341 1..341 1748 100 Plus
Ac3-PA 1167 CG1506-PA 1..327 1..327 1549 94.2 Plus
CG43373-PB 1240 CG42513-PB 547..730 121..302 225 32.3 Plus
CG43373-PC 1854 CG42513-PA 547..730 121..302 225 32.3 Plus
rut-PE 1391 CG9533-PE 137..274 167..302 207 36 Plus