Clone Sequence Records
BO17822.5prime Sequence
635 bp (515 high quality bases) assembled on 2006-10-13
> BO17822.5prime
GAAGTTATCCGTCGACATGGAACTTAAAAAAATGAAATCTTTAAAAGACG
ACGCTGCCGAATCCCAATCTCAGCCAGAAACCGGGGTCCGGAAGCGCCGC
AACCCCTTTAACACACAGAGGCTGAAGGAAGAGAAGGAGCGCCGCCAGAA
AAAGCGAGCGCGTCTCATCGTGCGCAACATCAGTTACAAGTCCACGGAGG
ACTCGCTTCGCGAGCATTTCGGGCAGTGGGGCACGCTGGAGGATGTACAC
ATCCTGAAACGAGGTGACGGGAAGCTGGTGGGCTGCGCCTTTGTCCAGTA
CGAGACCATTAACCAGGCCACCAAAGCGATCCTGAACTCCAACGGCAAAG
AGCTGCTCGGGAGAAAGGTATTTGTGGACTGGGCTTTGGGCAAGGACGAG
TATGTATCAAAGAACCCGAAAGACGAGGAGCCGGATGAGAAGAAGCCAAA
GGTGGAAGTGAAAGAGGAAAACGGTGACGAGAAGGAAGTTAAGGAGGAAA
GCGACGCGGAAGTTGGCAAGGAAGATGAAAGTTCTGGGGAGGATTCTGAT
GCGGAATCCGGCGAAGATGAAGAGGACTCTGGAGAATCTGAAGACGAAGA
GAACGACGAAGATCATAAGGAGAACAAGGACGAAT
BO17822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4806-PA | 1974 | CG4806-RA | 1..619 | 17..635 | 3095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4806-RA | 2070 | CG4806-RA | 43..661 | 17..635 | 3095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24667683..24668301 | 635..17 | 3095 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 18:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 599..667 | 435..502 | 153 | 71 | Plus |
| TAHRE | 10463 | TAHRE OSV 10463bp | 286..354 | 435..502 | 135 | 70 | Plus |
BO17822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:46 Download gff for
BO17822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4806-PA | 1..619 | 17..635 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:55:05 Download gff for
BO17822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4806-RA | 36..661 | 10..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:08:16 Download gff for
BO17822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4806-RA | 36..661 | 10..635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:08:16 Download gff for
BO17822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24667683..24668308 | 10..635 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:55:05 Download gff for
BO17822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20555206..20555831 | 10..635 | 99 | | Minus |
BO17822.complete Sequence
2005 bp assembled on 2008-11-10
GenBank Submission: KX796373
> BO17822.complete
GAAGTTATCCGTCGACATGGAACTTAAAAAAATGAAATCTTTAAAAGACG
ACGCTGCCGAATCCCAATCTCAGCCAGAAACCGGGGTCCGGAAGCGCCGC
AACCCCTTTAACACACAGAGGCTGAAGGAAGAGAAGGAGCGCCGCCAGAA
AAAGCGAGCGCGTCTCATCGTGCGCAACATCAGTTACAAGTCCACGGAGG
ACTCGCTTCGCGAGCATTTCGGGCAGTGGGGCACGCTGGAGGATGTACAC
ATCCTGAAACGAGGTGACGGGAAGCTGGTGGGCTGCGCCTTTGTCCAGTA
CGAGACCATTAACCAGGCCACCAAAGCGATCCTGAACTCCAACGGCAAAG
AGCTGCTCGGGAGAAAGGTATTTGTGGACTGGGCTTTGGGCAAGGACGAG
TATGTATCAAAGAACCCGAAAGACGAGGAGCCGGATGAGAAGAAGCCAAA
GGTGGAAGTGAAAGAGGAAAACGGTGACGAGAAGGAAGTTAAGGAGGAAA
GCGACGCGGAAGTTGGCAAGGAAGATGAAAGTTCTGGGGAGGATTCTGAT
GCGGAATCCGGCGAAGATGAAGAGGACTCTGGAGAATCTGAAGACGAAGA
GAACGACGAAGATCATAAGGAGAACAAGGACGAATTAAAATCAAAATTGG
ATATCAAAAATGTCAAAAGGGAAAAGCAAATCTCCAACGACGTCCAGGAG
GGCTGCACGGTCTTCATTAAAAACGTTCCCTTCGATGCAGAGGATGCCGA
CTTGAGAAAGGCGTGCCGCAAATTCGGCTTGGTCAGCTACGCCATTATTA
ATCGCCAGGCGGTTTCTGGCCACTCCAAGGGTACAGCCTTCGTTAAATTC
AAAGCCAAGGAGTCAGCGGATCTTTGTCTGCAAGCTGGAACAGAGTTTAA
GTTGATGGACGAGGTCCTGGATCCTCATCCCGCATTGAGCCGCGAGGAAA
TGAAGTCGAAGCAGTCGCAGGAAAACAAAAAAGACGATGCCAAGGACTCA
CGAAACCTGTATTTGGCCAGGGAAGGTCTAATCATGGCTGGAGCGAAGGC
AGCCGATGGGGTTTCTGCCTCAGACATGGCCAAGCGACATGAACTTGAGC
AGGTTAAGACGCAGGTGCTCAAGAACTTGAATCGGTTTGTTTCCCGGAAT
CGCTTGTCCATTCACAATCTCCCCCAAAACTATGACAATGAAAAGCTGAA
ACAAATGGCTCTGACTTATACTGGCTTCCGACCCCACGAATGCCGGGTGA
TGAGGGAACATAAGGTGACCCCTGAGCATCCACAGGGCAAGTCCAAGGGC
TTTGGTTTCCTATCCTTCGACACGCATCAGAGAGCTTTGGCCGCCCTACG
GAAACTAAACAACAACCCCAATATCTTCGGAACACAGAGTCGCCCCATTG
TCGCGTTCAGTATAGAGGATCGTGCTGTGCACAAAATCAAAGAAAAGCGC
ACGGAGCGCTCAAAGCAGAACAATCCCACATACCAAAACAAACAGCAGGA
GCGCAAGGAGCGACGCCAGCAAAAGCGCAATGGTCAGGAGACCAAAACTC
CAGTTCCCCAAGCAGATAATAAAAGCAAACTTCAGAAACACATTAAGAAA
CTTGAAGCTTCGCGAGCAGCGAAAGCCGAAGGTAAAGTCGCGGAGAAAAA
GCAGTTGAGCGATGTTCAGGGCGATTTTGTCGGCACGGCCGCCAAGCCGG
GCACCTCGCTGAAGATGCGATCCAAAAAGAAGATTGTAGAGCAGGCCAAG
GAACACTTGAAGAAGGTGAAAACCGAAAAGCGCAAGCAGAAGAACAAGAA
GATACGCGAGTCCCACCTGGCAGAGCGCAAGGCAAATAATCGGCCCAAGC
AAGGACGCAAGAAGGAAACGGATGACCTTCGGCCCCTAATTAATAAGTAC
AAGAACATGATTAGTGGAAACCAAGGAGGTGGCGGCGTTACGGGAGGTAA
AATCAAGAAGCCTAAGCGTACCAAGTGGTACACGGAGGCAAGCTTTCTAG
ACCAT
BO17822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4806-RA | 1974 | CG4806-PA | 1..1971 | 17..1987 | 9855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4806-RA | 2070 | CG4806-RA | 43..2013 | 17..1987 | 9855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24667182..24668301 | 1136..17 | 5600 | 100 | Minus |
| 2R | 25286936 | 2R | 24666215..24666811 | 1987..1391 | 2985 | 100 | Minus |
| 2R | 25286936 | 2R | 24666869..24667125 | 1390..1134 | 1285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:01:21 has no hits.
BO17822.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:36 Download gff for
BO17822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4806-RA | 23..2004 | 10..1993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:46 Download gff for
BO17822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4806-RA | 43..2013 | 17..1989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:26:41 Download gff for
BO17822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4806-RA | 30..2000 | 17..1989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:55 Download gff for
BO17822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4806-RA | 43..2013 | 17..1989 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:55 Download gff for
BO17822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24666211..24666811 | 1391..1989 | 99 | <- | Minus |
| 2R | 24666869..24667124 | 1135..1390 | 100 | <- | Minus |
| 2R | 24667184..24668301 | 17..1134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:46 Download gff for
BO17822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20553734..20554334 | 1391..1989 | 99 | <- | Minus |
| arm_2R | 20554392..20554647 | 1135..1390 | 100 | <- | Minus |
| arm_2R | 20554707..20555824 | 17..1134 | 100 | | Minus |
BO17822.pep Sequence
Translation from 16 to 2005
> BO17822.pep
MELKKMKSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQKKRARL
IVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYETINQ
ATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKE
ENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDEDH
KENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDADLRKAC
RKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTEFKLMDEV
LDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVS
ASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLKQMALT
YTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNN
PNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNPTYQNKQQERKERR
QQKRNGQETKTPVPQADNKSKLQKHIKKLEASRAAKAEGKVAEKKQLSDV
QGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKKVKTEKRKQKNKKIRESH
LAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGGVTGGKIKKPK
RTKWYTEASFLDH
BO17822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4806-PA | 657 | CG4806-PA | 1..657 | 1..657 | 3381 | 100 | Plus |
