Clone Sequence Records
BO17823.3prime Sequence
883 bp (770 high quality bases) assembled on 2006-10-13
> BO17823.3prime
ATGGTCTAGAAAGCTTGCGAGTAGCGTCTCATTGCCATACTGCTGCAAGT
GGGGATAGTAGCTGCCGTGCTGGCTGTACTTTTGCGAGGCATAGCTACCT
GGCGGATAATACAGCCGATGCGAGGATGTGGAGTGATGCTGGTGATTGTG
GTGGGGATGGAACTGATGATGCTGCTGCTGCTGGTGATGATGATGATGCG
GCGAATGGCGCTGCTGGTGATGCACGCTCCTGCCCAGCGAATAGTTGGAC
ATCTGATTCAGCGATATAGAGCCGGTACCAGGCGAAGTCTTCAGTTTGTA
CGGACTTGGCGGCAACGGAACACTGGCCATAGAAGTTCGCACCGAATGGT
AGGAGACCACCGTGCTATTGCAAGCCGCATGCGATCCACGCGAGCTACTA
TGCCCGTCCAGGTGTCCAGTTGCTGCTCCGGCAGACGTATGCTTCACCAT
TTTGCCATTGCTGACTTGCCTCTTGTAGAGAGTGGAAATGCTTGGTCCAA
GTACCCAGGCAAAACAGCAAATGCCCAGCATCAGTTCCATGAAGGCGCGC
AACAAAAATGGCCAAAGTGGCGTATTGGTATCACCCGATCCCAGCCAGAC
ATCGATGTTGGCAAACTCGTAAATGACAGCCAACAGAAGCATGGCACATG
CAAGTCCATAGATGAAAAGGAATATGCCAATGCCGGAACTACTGTGTGCG
CTTAGCTGTTGCAGTTGCTGTTGCACGCTGAGTGCATTGCTATTCCTCAN
GATCTCCTTGGTGCGACAGTGTACCAAATAGCCGGAGATCAGATTCATCG
AGCCAAAGATCCAGTAGCAAAAAACGGGCGTAGCCACCAATATCTGTAGC
GCCTTATCCGACTGATTGCCTACGAAACAGGCG
BO17823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4626-PB | 2118 | fz4-RB | 1251..2115 | 883..19 | 4306 | 99.8 | Minus |
| CG4626-PA | 2118 | fz4-RA | 1251..2115 | 883..19 | 4306 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-RA | 3927 | CG4626-RA | 1951..2815 | 883..19 | 4314 | 99.9 | Minus |
| fz4-RB | 3674 | CG4626-RB | 1698..2562 | 883..19 | 4314 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7107384..7108248 | 19..883 | 4314 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:44:07 has no hits.
BO17823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:47 Download gff for
BO17823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4626-PA | 1251..2118 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:24:34 Download gff for
BO17823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 1698..2562 | 19..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:17 Download gff for
BO17823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 1698..2562 | 19..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:17 Download gff for
BO17823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7107384..7108248 | 19..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:24:34 Download gff for
BO17823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7001417..7002281 | 19..883 | 99 | | Plus |
BO17823.5prime Sequence
839 bp (669 high quality bases) assembled on 2006-10-13
> BO17823.5prime
GAAGTTATCAGTCGACATGAAGCCAACCTGCATATTGTGTCTCCTGGTGG
TGATCCTCCTGCATCCGCGCATCTCAAAATCCTCAACGAGCGGCAACCCC
AGTGCCAGTTCCAGTTCCAGTTCTCCGCCAGAAATCCCCGCCTTCCGGCA
ATGCGAAACCATTCGCATTGAGATGTGCCGCAAGATCGGCTACAATGAGA
CCTCCATGCCAAATCTGGTGGGTAACGAAATGCAAACGGACGTGGAGTAC
ACACTGCAAACCTTTGCACCACTGATCGAATACGACTGCAGTTCCCAGTT
GAAGCTGTTCCTGTGCGCCGCCTACGTGCCCATGTGCACGCCCAAAGCTC
CAGTCCATGCCATCGGTCCGTGCCGGAGTCTCTGTGAGTCCGTGCGAATA
CGTTGTCATCCAGTTTTGCAGGGATTCGGATTTCCATGGCCACCGGCTCT
CGACTGCGATAAATTTCCGCGAGAGAACAACCACGAGACGATGTGTATGG
AAGGTCCCGGTGAATTGCATCAGCCGCAGCAGGAGCAGGATTTGTATGGG
CTACCGGGCCAAGGAATACCCGGTGGATTGGGCGGTAAACTGCCCATGGA
TTGCTCGGGACTGGCCAAATCGCATCTGTACGTAAGGCTACCCAGATCTG
GACGCTGTGCACCACTCTGCGAGGCGGACATACTGTTCACACCGGCGGAG
AAGCATCTGGCAGAGATCTGGGTCTCCACATGGGCCTATGCCGCTTTGGG
TTTGGCCCTGGTAGCCACCGTGTGTCTTTTGGCCAGCGATGGCAGTCGTT
TGGCCAGCGCCAAGTGGTCCAGATTTGTGTCGCCGCTGA
BO17823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4626-PB | 2118 | fz4-RB | 1..823 | 17..839 | 4065 | 99.7 | Plus |
| CG4626-PA | 2118 | fz4-RA | 1..823 | 17..839 | 4065 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-RA | 3927 | CG4626-RA | 691..1523 | 7..839 | 4090 | 99.4 | Plus |
| fz4-RB | 3674 | CG4626-RB | 438..1270 | 7..839 | 4090 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7108799..7109631 | 839..7 | 4090 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:37:17 has no hits.
BO17823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:49 Download gff for
BO17823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4626-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:55:09 Download gff for
BO17823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 438..1269 | 7..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:09:26 Download gff for
BO17823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 438..1269 | 7..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:09:26 Download gff for
BO17823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7108800..7109631 | 7..838 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:55:09 Download gff for
BO17823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7002833..7003664 | 7..838 | 99 | | Minus |
BO17823.complete Sequence
2149 bp assembled on 2006-12-18
GenBank Submission: FJ634230
> BO17823.complete
GAAGTTATCAGTCGACATGAAGCCAACCTGCATATTGTGTCTCCTGGTGG
TGATCCTCCTGCATCCGCGCATCTCAAAATCCTCAACGAGCGGCAACCCC
AGTGCCAGTTCCAGTTCCAGTTCTCCGCCAGAAATCCCCGCCTTCCGGCA
ATGCGAAACCATTCGCATTGAGATGTGCCGCAAGATCGGCTACAATGAGA
CCTCCATGCCAAATCTGGTGGGTAACGAAATGCAAACGGACGTGGAGTAC
ACACTGCAAACCTTTGCACCACTGATCGAATACGACTGCAGTTCCCAGTT
GAAGCTGTTCCTGTGCGCCGCCTACGTGCCCATGTGCACGCCCAAAGCTC
CAGTCCATGCCATCGGTCCGTGCCGGAGTCTCTGTGAGTCCGTGCGAATA
CGTTGTCATCCAGTTTTGCAGGGATTCGGATTTCCATGGCCACCGGCTCT
CGACTGCGATAAATTTCCGCGAGAGAACAACCACGAGACGATGTGTATGG
AAGGTCCCGGTGAATTGCATCAGCCGCAGCAGGAGCAGGATTTGTATGGG
CTACCGGGCCAAGGAATACCCGGTGGATTGGGCGGTAAACTGCCCATGGA
TTGCTCGGGACTGGCCAAATCGCATCTGTACGTAAGGCTACCCAGATCTG
GACGCTGTGCACCACTCTGCGAGGCGGACATACTGTTCACACCGGCGGAG
AAGCATCTGGCAGAGATCTGGGTCTCCACATGGGCCTATGCCGCTTTGGG
TTTGGCCCTGGTAGCCACCGTGTGTCTTTTGGCCAGCGATGGCAGTCGTT
TGGCCAGCGCCAAGTGGTCCAGATTGTTGTCGCCGCTGATTTGGTGCCAC
AACATGGTCACCTTGGGCTGGGCAGTGCGCTTTATGGTGGGAAGAACGGG
AACTGCGTGCGGCACGGATCCCCAGGCGCCCAATGAATCCCTACTCACCG
TGGACGGACTGTCCAATGCCTCCTGCGCTAGTGTCTTCCTTATGCGCTAC
TATTTTGGAATGGCCGCCTGCGCTTGGTGGGCTGTGCTCTGTTTGGGCTG
GCACCGCGACATTCGTCGGCACAGTCCGGACTCCAAGGGCCATGTGGTCA
TTCCCTCGAACTTTGGAGGCAGTCCGGCGAAGAGGAACAGTGCCAAGACG
GCTCAGCAGGATCTAACGCAAAACAACTTTGTGTGCTTCGTGGCCTGGGG
ATTGCCGGCCTTTCAAACGTCAGCAGTGATCGTTGCCCGTTTCGTGGATG
CTGACGAGTTGCTTGGCGCCTGTTTCGTAGGCAATCAGTCGGATAAGGCG
CTACAGATATTGGTGGCTACGCCCGTTTTTTGCTACTGGATCTTTGGCTC
GATGAATCTGATCTCCGGCTATTTGGTACACTGTCGCACCAAGGAGATCC
TGAGGAATAGCAATGCACTCAGCGTGCAACAGCAACTGCAACAGCTAAGC
GCACACAGTAGTTCCGGCATTGGCATATTCCTTTTCATCTATGGACTTGC
ATGTGCCATGCTTCTGTTGGCTGTCATTTACGAGTTTGCCAACATCGATG
TCTGGCTGGGATCGGGTGATACCAATACGCCACTTTGGCCATTTTTGTTG
CGCGCCTTCATGGAACTGATGCTGGGCATTTGCTGTTTTGCCTGGGTACT
TGGACCAAGCATTTCCACTCTCTACAAGAGGCAAGTCAGCAATGGCAAAA
TGGTGAAGCATACGTCTGCCGGAGCAGCAACTGGACACCTGGACGGGCAT
AGTAGCTCGCGTGGATCGCATGCGGCTTGCAATAGCACGGTGGTCTCCTA
CCATTCGGTGCGAACTTCTATGGCCAGTGTTCCGTTGCCGCCAAGTCCGT
ACAAACTGAAGACTTCGCCTGGTACCGGCTCTATATCGCTGAATCAGATG
TCCAACTATTCGCTGGGCAGGAGCGTGCATCACCAGCAGCGCCATTCGCC
GCATCATCATCATCACCAGCAGCAGCAGCATCATCAGTTCCATCCCCACC
ACAATCACCAGCATCACTCCACATCCTCGCATCGGCTGTATTATCCGCCA
GGTAGCTATGCCTCGCAAAAGTACAGCCAGCACGGCAGCTACTATCCCCA
CTTGCAGCAGTATGGCAATGAGACGCTACTCGCAAGCTTTCTAGACCAT
BO17823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-RA | 2118 | CG4626-PA | 1..2115 | 17..2131 | 10575 | 100 | Plus |
| fz4-RB | 2118 | CG4626-PB | 1..2115 | 17..2131 | 10575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-RA | 3927 | CG4626-RA | 691..2815 | 7..2131 | 10580 | 99.9 | Plus |
| fz4-RB | 3674 | CG4626-RB | 438..2562 | 7..2131 | 10580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7108610..7109631 | 1028..7 | 5065 | 99.7 | Minus |
| X | 23542271 | X | 7107384..7108250 | 2131..1265 | 4335 | 100 | Minus |
| X | 23542271 | X | 7108311..7108551 | 1266..1026 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:54:44 has no hits.
BO17823.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:05 Download gff for
BO17823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RA | 1..2118 | 17..2132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:40 Download gff for
BO17823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RA | 144..2268 | 7..2131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:26 Download gff for
BO17823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 448..2562 | 17..2133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:06 Download gff for
BO17823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RA | 144..2268 | 7..2131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:32 Download gff for
BO17823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz4-RB | 448..2562 | 17..2133 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:32 Download gff for
BO17823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7107382..7108249 | 1266..2133 | 99 | <- | Minus |
| X | 7108312..7108550 | 1027..1265 | 100 | <- | Minus |
| X | 7108612..7109621 | 17..1026 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:26 Download gff for
BO17823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7001415..7002282 | 1266..2133 | 99 | <- | Minus |
| arm_X | 7002345..7002583 | 1027..1265 | 100 | <- | Minus |
| arm_X | 7002645..7003654 | 17..1026 | 100 | | Minus |
BO17823.pep Sequence
Translation from 16 to 2149
> BO17823.pep
MKPTCILCLLVVILLHPRISKSSTSGNPSASSSSSSPPEIPAFRQCETIR
IEMCRKIGYNETSMPNLVGNEMQTDVEYTLQTFAPLIEYDCSSQLKLFLC
AAYVPMCTPKAPVHAIGPCRSLCESVRIRCHPVLQGFGFPWPPALDCDKF
PRENNHETMCMEGPGELHQPQQEQDLYGLPGQGIPGGLGGKLPMDCSGLA
KSHLYVRLPRSGRCAPLCEADILFTPAEKHLAEIWVSTWAYAALGLALVA
TVCLLASDGSRLASAKWSRLLSPLIWCHNMVTLGWAVRFMVGRTGTACGT
DPQAPNESLLTVDGLSNASCASVFLMRYYFGMAACAWWAVLCLGWHRDIR
RHSPDSKGHVVIPSNFGGSPAKRNSAKTAQQDLTQNNFVCFVAWGLPAFQ
TSAVIVARFVDADELLGACFVGNQSDKALQILVATPVFCYWIFGSMNLIS
GYLVHCRTKEILRNSNALSVQQQLQQLSAHSSSGIGIFLFIYGLACAMLL
LAVIYEFANIDVWLGSGDTNTPLWPFLLRAFMELMLGICCFAWVLGPSIS
TLYKRQVSNGKMVKHTSAGAATGHLDGHSSSRGSHAACNSTVVSYHSVRT
SMASVPLPPSPYKLKTSPGTGSISLNQMSNYSLGRSVHHQQRHSPHHHHH
QQQQHHQFHPHHNHQHHSTSSHRLYYPPGSYASQKYSQHGSYYPHLQQYG
NETLLASFLDH
BO17823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz4-PA | 705 | CG4626-PA | 1..705 | 1..705 | 3824 | 100 | Plus |
| fz4-PB | 705 | CG4626-PB | 1..705 | 1..705 | 3824 | 100 | Plus |
| fz2-PG | 694 | CG9739-PG | 57..604 | 38..544 | 465 | 25.5 | Plus |
| fz2-PE | 694 | CG9739-PE | 57..604 | 38..544 | 465 | 25.5 | Plus |
| fz2-PD | 694 | CG9739-PD | 57..604 | 38..544 | 465 | 25.5 | Plus |
