Clone Sequence Records
BO17827.3prime Sequence
882 bp (675 high quality bases) assembled on 2006-10-13
> BO17827.3prime
ATGGTCTAGAAAGCTTGCACTTTCCATAGTCTGATTCGATCCGTTTAGTC
GCTTGATGGCTATTTTGGCTACACCCTTCGAGCACTCTGTGGATCCGCCC
ATGATGACGAGGAAGAGTCCGTTGTGCGCAACTGACTTCCACAGGCGATC
AATGGTCTTGTCCAGTTTGGCAACACTCCGCTGTGCACTGTCCAATATAA
AGTCCTGCTCTGGCACGCGGAGGTTGGCAATTGTCAGGGCATTTTCCAGT
GCAACTTCATTGACCTTCCGAATGGCTTCCTTGGCCGTAGATACCTCGTG
GACATGCACCGACGTACTTTGATCCTTGGGCGCTGCCTCTCCCGCCTTTT
CGATCACTTCCTTTAGACGGGGCTGCAGCTCGCCGACCGTGACAATGGCC
GTGCGCTTATCCCGCTTTGCCACATGTGCAAACAGATTGTTGGATATGGT
ATCACCGCTGGATGCGTTCGCCAACTCCTGTAATTGCTTGTGCTGCGTGA
GGATCTGGTCTCCGAACTCGATGCTGTTTGCCAGCTTCTTCTTGACGAGC
TTCAGCGTGGCTCGCGAATCCTCAATGGAATCGTGACCATCGATGTTCTC
CTGGATAATTTCCTGTAAAAAGGTTTTGGCCAGATCCTTCAGCTTGGTCT
TGCGTCGTCGCACCCCAGATGTGTTAAAGCACACGCTGGTGTCAATTACA
TACGGGTGCATCATTTTCATGGCGTTCAAGTCAGAATTTAGAGATTGCCC
CACCAGAATGGCATCTGGAGGCAGCAGTTCGGACACTTCCTTTTGCACAA
CATCCAGCCTCTTGGTCACTTGCTCCATAATTTTCTGCGGTATGCCCGAA
TATTGAGTTAGATAGTCGGTGATCCGGGTATT
BO17827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-PB | 2046 | CG8368-RB | 1185..2043 | 877..19 | 4195 | 99.6 | Minus |
| CG8368-PA | 2046 | CG8368-RA | 1185..2043 | 877..19 | 4195 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-RA | 2505 | CG8368-RA | 1318..2181 | 882..19 | 4245 | 99.5 | Minus |
| CG8368-RB | 2821 | CG8368-RB | 1634..2497 | 882..19 | 4245 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6607552..6608415 | 882..19 | 4200 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:04:01 has no hits.
BO17827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:54 Download gff for
BO17827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-PA | 1180..2046 | 18..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:18 Download gff for
BO17827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 1634..2508 | 10..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:52 Download gff for
BO17827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 1634..2508 | 10..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:52 Download gff for
BO17827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6607552..6608426 | 10..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:18 Download gff for
BO17827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6600652..6601526 | 10..882 | 99 | | Minus |
BO17827.5prime Sequence
852 bp (739 high quality bases) assembled on 2006-10-13
> BO17827.5prime
GAAGTTATCAGTCGACATGAAGGAACATATGTCCACCAAGCAGCACGAGC
GCAACGAGAAGAAGAAAAAGAAGCTGGCGGCCCTGGCGAACCTGATGGAG
CTCAACGATCGCGATCGATTGCACGAGGCAGAGTTGGCCAAAAAACGCGA
TGCAGAGGTCGAAGTGGAGGAGAAGTCAACAGCGAAGGCGGAGGACGGGG
ACGACGGTTTCATCGTGGTGGGCAGCAAACGCAAGCCGCGAAACCGTCGT
CAAAACAACGAGCTGGAGGCGGATTCACAGACTGCCCCAGGAACATCAGA
TCCTGAAGAGCCGGTGAACAAGAAAATCCGCAATTACGATGCTGGTGGAG
ATAGCCTGCCGCTGGAGATTGGCTCGCTATCCGAGGATCAGTACAATCAG
TTGTCGGCAGAGTTGAGGCGTCGCAAACGGGAGCTGGAGAACGTACCGGC
CTTGCGACTGCGTGAGATGGGTCAGCGCGCCTCCCTGGAGACTCCGCAAG
ATGCTCGTACGCCCATCTTTCTAACCGACATCCAGAACCTGTTGATGTGC
GCTCTCATTGGCCAGAAGAGCCCCTGCCGTCCGGATCGCTGGTGCAGCGT
GGAGAAGTGGCTCAGTCTGTCGCACAGTGTGGTGGTCATTCTGGAGGGAC
TATCTCTCTACCACTATCTGTCTAACGAGACCCAGTTTGAGGCCACCAAC
AGGATATTCAGCACGAAGCTGGAGATGATACTTCCACCGCAGGAGGAGGG
CCAGAAGATTATCGACGAGATAGCCAAGATTCCCTCTCACCATGCGCAGG
CACGCAGACTGATAGACGAGCACGGCTCCCTGGAGTCGGCTGTGGAGCTG
AA
BO17827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-PB | 2046 | CG8368-RB | 1..836 | 17..852 | 4105 | 99.7 | Plus |
| CG8368-PA | 2046 | CG8368-RA | 1..836 | 17..852 | 4105 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-RA | 2505 | CG8368-RA | 139..974 | 17..852 | 4135 | 99.8 | Plus |
| CG8368-RB | 2821 | CG8368-RB | 455..1290 | 17..852 | 4135 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6606317..6607078 | 17..778 | 3810 | 100 | Plus |
| 3L | 28110227 | 3L | 6607148..6607208 | 792..852 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:06:52 has no hits.
BO17827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:55 Download gff for
BO17827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:32:24 Download gff for
BO17827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 451..1290 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:09 Download gff for
BO17827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 451..1290 | 9..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:09 Download gff for
BO17827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6606313..6607078 | 9..778 | 99 | -> | Plus |
| 3L | 6607135..6607208 | 779..852 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:32:24 Download gff for
BO17827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6599413..6600178 | 9..778 | 99 | -> | Plus |
| arm_3L | 6600235..6600308 | 779..852 | 97 | | Plus |
BO17827.complete Sequence
2077 bp assembled on 2007-03-23
GenBank Submission: FJ634231
> BO17827.complete
GAAGTTATCAGTCGACATGAAGGAACATATGTCCACCAAGCAGCACGAGC
GCAACGAGAAGAAGAAAAAGAAGCTGGCGGCCCTGGCGAACCTGATGGAG
CTCAACGATCGCGATCGATTGCACGAGGCAGAGTTGGCCAAAAAACGCGA
TGCAGAGGTCGAAGTGGAGGAGAAGTCAACAGCGAAGGCGGAGGACGGGG
ACGACGGTTTCATCGTGGTGGGCAGCAAACGCAAGCCGCGAAACCGTCGT
CAAAACAACGAGCTGGAGGCGGATTCACAGACTGCCCCAGGAACATCAGA
TCCTGAAGAGCCGGTGAACAAGAAAATCCGCAATTACGATGCTGGTGGAG
ATAGCCTGCCGCTGGAGATTGGCTCGCTATCCGAGGATCAGTACAATCAG
TTGTCGGCAGAGTTGAGGCGTCGCAAACGGGAGCTGGAGAACGTACCGGC
CTTGCGACTGCGTGAGATGGGTCAGCGCGCCTCCCTGGAGACTCCGCAAG
ATGCTCGTACGCCCATCTTTCTAACCGACATCCAGAACCTGTTGATGTGC
GCTCTCATTGGCCAGAAGAGCCCCTGCCGTCCGGATCGCTGGTGCAGCGT
GGAGAAGTGGCTCAGTCTGTCGCACAGTGTGGTGGTCATTCTGGAGGGAC
TATCTCTCTACCACTATCTGTCTAACGAGACCCAGTTTGAGGCCACCAAC
AGGATATTCAGCACGAAGCTGGAGATGATACTTCCACCGCAGGAGGAGGG
CCAGAAGATTATCGACGAGATAGCCAAGATTCCTCTCACCAATGCGCAGG
CACGCAGACTGATAGACGAGCACGGCTCCCTGGAGTCGGCTGTGGAGCTG
AACAAAGATCCAACTTTGTTTGTAAAGACAATCTTTCCAATCGAAAGCTC
TAAATCTGAGTCGGATGACATGCATGAGGATGACAAGTTCCCACGCACTA
AGCTCCTGCTGTCAGCGCTGCAAATGGTCGACGAGGGCTATCCTATTCCA
TTGCAGGGCGAGCTACACACTCGTTTCCAAAACTTTAAGTTTACCAAGGA
TCTGTATGCACCGGTAACCAATCGCAGTCCTATGTTCGGCGTTGATTGTG
AAATGTGTCACACGGAGGCGGGTTGTAACGAGCTAACCCGAATCTCTATT
GTCAACGAAAATTACGAGACCGTTTATGAAACGCTAGTGTTGCCAAATAA
CCGGATCACCGACTATCTAACCCAATATTCGGGCATAACCGCAGAAATTA
TGGAGCAAGTGACCAAGAGGCTGGATGTTGTGCAAAAGGAAGTGTCCGAA
CTGCTGCCTCCAGATGCCATTCTGGTGGGGCAATCTCTAAATTCTGACTT
GAACGCCATGAAAATGATGCACCCGTATGTAATTGACACCAGCGTGTGCT
TTAACACATCTGGGGTGCGACGACGCAAGACCAAGCTGAAGGATCTGGCC
AAAACCTTTTTACAGGAAATTATCCAGGAGAACATCGATGGTCACGATTC
CATTGAGGATTCGCGAGCCACGCTGAAGCTCGTCAAGAAGAAGCTGGCAA
ACAGCATCGAGTTCGGAGACCAGATCCTCACGCAGCACAAGCAATTACAG
GAGTTGGCGAACGCATCCAGCGGTGATACCATATCCAACAATCTGTTTGC
ACATGTGGCAAAGCGGGATAAGCGCACGGCCATTGTCACGGTCGGCGAGC
TGCAGCCCCGTCTAAAGGAAGTGATCGAAAAGGCGGGAGAGGCAGCGCCC
AAGGATCAAAGTACGTCGGTGCATGTCCACGAGGTATCTACGGCCAAGGA
AGCCATTCGGAAGGTCAATGAAGTTGCACTGGAAAATGCCCTGACAATTG
CCAACCTCCGCGTGCCAGAGCAGGACTTTATATTGGACAGTGCACAGCGG
AGTGTTGCCAAACTGGACAAGACCATTGATCGCCTGTGGAAGTCAGTTGC
GCACAACGGACTCTTCCTCGTCATCATGGGCGGATCCACAGAGTGCTCGA
AGGGTGTAGCCAAAATAGCCATCAAGCGACTAAACGGATCGAATCAGACT
ATGGAAAGTGCAAGCTTTCTAGACCAT
BO17827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-RA | 2046 | CG8368-PA | 1..2043 | 17..2059 | 10215 | 100 | Plus |
| CG8368-RB | 2046 | CG8368-PB | 1..2043 | 17..2059 | 10215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-RA | 2505 | CG8368-RA | 139..2181 | 17..2059 | 10215 | 100 | Plus |
| CG8368-RB | 2821 | CG8368-RB | 455..2497 | 17..2059 | 10215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6607133..6608415 | 777..2059 | 6415 | 100 | Plus |
| 3L | 28110227 | 3L | 6606317..6607078 | 17..778 | 3810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:04:31 has no hits.
BO17827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:01 Download gff for
BO17827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RA | 1..2046 | 17..2060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:21 Download gff for
BO17827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RA | 115..2172 | 9..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:12 Download gff for
BO17827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 455..2497 | 17..2061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:01 Download gff for
BO17827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RA | 115..2172 | 9..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:55 Download gff for
BO17827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 455..2497 | 17..2061 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:55 Download gff for
BO17827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6606317..6607078 | 17..778 | 100 | -> | Plus |
| 3L | 6607135..6608415 | 779..2061 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:12 Download gff for
BO17827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6599417..6600178 | 17..778 | 100 | -> | Plus |
| arm_3L | 6600235..6601515 | 779..2061 | 99 | | Plus |
BO17827.pep Sequence
Translation from 16 to 2077
> BO17827.pep
MKEHMSTKQHERNEKKKKKLAALANLMELNDRDRLHEAELAKKRDAEVEV
EEKSTAKAEDGDDGFIVVGSKRKPRNRRQNNELEADSQTAPGTSDPEEPV
NKKIRNYDAGGDSLPLEIGSLSEDQYNQLSAELRRRKRELENVPALRLRE
MGQRASLETPQDARTPIFLTDIQNLLMCALIGQKSPCRPDRWCSVEKWLS
LSHSVVVILEGLSLYHYLSNETQFEATNRIFSTKLEMILPPQEEGQKIID
EIAKIPLTNAQARRLIDEHGSLESAVELNKDPTLFVKTIFPIESSKSESD
DMHEDDKFPRTKLLLSALQMVDEGYPIPLQGELHTRFQNFKFTKDLYAPV
TNRSPMFGVDCEMCHTEAGCNELTRISIVNENYETVYETLVLPNNRITDY
LTQYSGITAEIMEQVTKRLDVVQKEVSELLPPDAILVGQSLNSDLNAMKM
MHPYVIDTSVCFNTSGVRRRKTKLKDLAKTFLQEIIQENIDGHDSIEDSR
ATLKLVKKKLANSIEFGDQILTQHKQLQELANASSGDTISNNLFAHVAKR
DKRTAIVTVGELQPRLKEVIEKAGEAAPKDQSTSVHVHEVSTAKEAIRKV
NEVALENALTIANLRVPEQDFILDSAQRSVAKLDKTIDRLWKSVAHNGLF
LVIMGGSTECSKGVAKIAIKRLNGSNQTMESASFLDH
BO17827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-PA | 681 | CG8368-PA | 1..681 | 1..681 | 3453 | 100 | Plus |
| CG8368-PB | 681 | CG8368-PB | 1..681 | 1..681 | 3453 | 100 | Plus |
| CG12877-PC | 991 | CG12877-PC | 827..990 | 350..514 | 319 | 41.8 | Plus |
| CG42666-PK | 742 | CG42666-PK | 575..726 | 356..506 | 250 | 38.6 | Plus |
| CG42666-PI | 742 | CG42666-PI | 575..726 | 356..506 | 250 | 38.6 | Plus |
