Clone Sequence Records
BO17830.3prime Sequence
855 bp (766 high quality bases) assembled on 2006-10-13
> BO17830.3prime
ATGGTCTAGAAAGCTTGCCAACTTCAGGCCCATAGACTTGCGCGTCGGAT
GGAATGGGTGTTCCATGTGTGACATATCCGGTGGGTTCTGCTCAAACGCA
CTTATCTCCTGCATGCCGCTGTTGGCGATCTCCCACAGCTGCGGGTATTC
CACCTTGAAGGTTTCGTACCACTTGTTCACCAACGTAAACTGGTGCAAGT
CAAAGTTAATTGCCTCCAAGCAGATCGTGGCCGAAATGAGAGCGAAGTCT
GCAATGGTTATGTTCTCGCCTGCCGCGTACTTAGTGCCCAGTCGCTGCAA
ATAGGTTTCGAACACATCAAGTGCGTTCTGCACCTTCTTTAGCGACATGG
GCGTACGTTTGTAGTCGAAGAAAATGGGCGCCATGCTGTGGGCGGATATG
GGGGCATAGTAGAATCCCATGTTAAAGCATAGCCGCTGATTGATTACTGC
TCTCACATTGACGTCCTGCGGATATAGCGTTGAATCCGGCGCGTACTTGT
CGCAGAGGTATTGCATAATGGCAATGCTCTCCGATAGATAGAAACCGTCG
TCGTCCAGCACGGGTATCTCCTTTTGCGGATTCATCTTCGAGTACTCCTC
AGAGCGATGTTCCATGGCGCANAAGTCCACATTGATGAGTTGATATTGTA
TATCCAAGGCCTTCAGGGTCATGCGAACGGCCAGGGAAGGCGGACCATCG
GATACGGCGTAGAGTTTCATTGTGTAGATGGGTACAATAGAGCCGTAGCT
TTCCATTTCATCGGCTACTTCCTCGACAACCTCAATGATCCCATCTGTGT
TGTCCACATCCATGTATTGTTGATCGCCCTCCATGGTCATTTCGACGCCT
TCCTC
BO17830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33546-PB | 3138 | gfzf-RB | 2299..3135 | 855..19 | 4166 | 99.8 | Minus |
| CG33546-PC | 801 | gfzf-RC | 84..798 | 733..19 | 3556 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gfzf-RE | 3608 | CG33546-RE | 2637..3473 | 855..19 | 4174 | 99.9 | Minus |
| gfzf-RB | 3910 | CG33546-RB | 2637..3473 | 855..19 | 4174 | 99.9 | Minus |
| gfzf-RD | 1200 | CG33546-RD | 45..763 | 737..19 | 3569 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7146317..7146885 | 19..587 | 2845 | 100 | Plus |
| 3R | 32079331 | 3R | 7146945..7147092 | 586..733 | 729 | 99.3 | Plus |
| 3R | 32079331 | 3R | 7147678..7147799 | 734..855 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:28:59 has no hits.
BO17830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:56 Download gff for
BO17830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33546-PB | 2299..3138 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:21:13 Download gff for
BO17830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 2637..3479 | 11..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:38:36 Download gff for
BO17830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 2637..3479 | 11..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:38:36 Download gff for
BO17830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7146311..7146883 | 11..585 | 99 | <- | Plus |
| 3R | 7146945..7147092 | 586..733 | 99 | <- | Plus |
| 3R | 7147678..7147799 | 734..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:21:13 Download gff for
BO17830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2972033..2972605 | 11..585 | 99 | <- | Plus |
| arm_3R | 2972667..2972814 | 586..733 | 99 | <- | Plus |
| arm_3R | 2973400..2973521 | 734..855 | 100 | | Plus |
BO17830.5prime Sequence
882 bp (718 high quality bases) assembled on 2006-10-13
> BO17830.5prime
GAAGTTATCAGTCGACATGGAGACGCCCGTCGAGGAGCACGGCATGGACC
TGACCAAGGTGTCCGTGGTGCGCTCCGCCAAGGGCGTGGATATGCTCTGC
GTGGACGACTATCTGTACCACTTCGATCGCATCGGGCGGAATAACACCTA
CCGATGGCTGTGCAACAGGCGCAAGGACAAGTCCACTCCCTGCAAGTCCC
GCATCTGCACCATGCTGCCCGATCCGCTGGACAAGACGCGCCACGTCGTC
GTGGACGTCGTTCTGGCCCACATCCACCCGCGCTGCAGCGATCACGAGGT
CAACAAGGTGGCCCAGCGCAAGCGGCTCTCCGTAATGATGATGAACGACG
CTTACAGCACCACCCAGCCGAAGAGAGCACGCCTGTACGAGCGCGCCAAC
GCCGGCATGAATCCGCCGGAGTTCATCTACGGAAGCATCGACACCTCCAC
CGTGGAGGCCTCGTTCCAGTTGGACTTTGAGGACAAGGATCGTGTGTACA
TGCTACGGCGCCGCGACGGCCGCGTGATGGTCTGCATCGACGGGCATCTG
TACTACCTGGCCGGGAAATCCTACAAGGGCGACATATTCCGATGGACCTG
TGTGCGCAAGCGTGACATTGAGTGCACGGCCAGGATCTGCACGGAGGCGA
CTTTGGCGGGGGCACATCGCCTGCATGCCGTCGACACGGATGCGCACATT
CATCCGCACTACTCGGCCGCCCAGCTGATGCACATGTTTTCGAAGCACCA
AATCGTGTTGGTGGAGGACGAAAATACCTCTGATGTGCTGGCAGAGTGCC
CCCATCTTGAATACTTCGATCCGGAAAACACTTTCGACACAGCTCAGCGG
GGCGATGACTTGGAATCCATATAATCAAGGAG
BO17830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33546-PB | 3138 | gfzf-RB | 1..855 | 17..871 | 4200 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gfzf-RE | 3608 | CG33546-RE | 339..1205 | 17..882 | 4250 | 99.4 | Plus |
| gfzf-RB | 3910 | CG33546-RB | 339..1205 | 17..882 | 4250 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7150165..7150630 | 482..17 | 2330 | 100 | Minus |
| 3R | 32079331 | 3R | 7149243..7149634 | 871..480 | 1915 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:23:18 has no hits.
BO17830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:57 Download gff for
BO17830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33546-PB | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:11:32 Download gff for
BO17830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 339..1205 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:34 Download gff for
BO17830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 339..1205 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:34 Download gff for
BO17830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7149231..7149632 | 482..882 | 98 | <- | Minus |
| 3R | 7150166..7150630 | 17..481 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:11:32 Download gff for
BO17830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2974953..2975354 | 482..882 | 98 | <- | Minus |
| arm_3R | 2975888..2976352 | 17..481 | 100 | | Minus |
BO17830.complete Sequence
3169 bp assembled on 2008-08-14
GenBank Submission: FJ634232
> BO17830.complete
GAAGTTATCAGTCGACATGGAGACGCCCGTCGAGGAGCACGGCATGGACC
TGACCAAGGTGTCCGTGGTGCGCTCCGCCAAGGGCGTGGATATGCTCTGC
GTGGACGACTATCTGTACCACTTCGATCGCATCGGGCGGAATAACACCTA
CCGATGGCTGTGCAACAGGCGCAAGGACAAGTCCACTCCCTGCAAGTCCC
GCATCTGCACCATGCTGCCCGATCCGCTGGACAAGACGCGCCACGTCGTC
GTGGACGTCGTTCTGGCCCACATCCACCCGCGCTGCAGCGATCACGAGGT
CAACAAGGTGGCCCAGCGCAAGCGGCTCTCCGTAATGATGATGAACGACG
CTTACAGCACCACCCAGCCGAAGAGAGCACGCCTGTACGAGCGCGCCAAC
GCCGGCATGAATCCGCCGGAGTTCATCTACGGAAGCATCGACACCTCCAC
CGTGGAGGCCTCGTTCCAGTTGGACTTTGAGGACAAGGATCGTGTGTACA
TGCTACGGCGCCGCGACGGCCGCGTGATGGTCTGCATCGACGGGCATCTG
TACTACCTGGCCGGGAAATCCTACAAGGGCGACATATTCCGATGGACCTG
TGTGCGCAAGCGTGACATTGAGTGCACGGCCAGGATCTGCACGGAGGCGA
CTTTGGCGGGGGCACATCGCCTGCATGCCGTCGACACGGATGCGCACATT
CATCCGCACTACTCGGCCGCCAAGCTGATGCACATGTTTTCGAAGCACCA
AATCGTGTTGGTGGAGGACGAAAATACCTCTGATGTGCTGGCAGAGTGCC
CCAATCTTGAGTACTTCGATCCGGAAAACACTTTCGACACAGCTCAGCGG
GGCGATGACTTGGAATCCATAATAATCGAGGAGTGCGAGGATAACTACGA
TATATACATGAGAACGGACGGAAGCCAAGGTGGAGGGATTCAAGGCAGCG
AAGAGCTCGAGAGCCAGGAAGGGGATGACGAGTCTTCGCTGGTGGACCCG
AAAATGCATCACAGCTCCAAGTGGCCAGCGGCATTCGACGTAATTGCCAA
CTATCTGCCGCCGCCGAGCCACAATCCACTCACGGAAACCGACTTGACCA
AGTTCACATTTCTACCATCGGCCAAGGGTCGAAAGGTGCTGTGCTTGAGT
CAGCATCTGTTCCACTTCGACTCGCAAAGCAGGTCAAACGGCCACATGTT
CTTCACATGCATAAACCGACGCGACAAGGCCAACACTTGTCACGTCCGCA
TTACCCTAGACCCGGTTGAAAACGGACCAGTAGTGCTTCGAATCAATGGG
GAGCACACGCACAATCCGGATATAAAAGAAATTGCTCGCCGGCTAAAGCA
GCAGGCCAAGCTGGATCAGGACAATGTGCACAAGCTGCAAAAGATCGAGC
ACTCTGAAGAGATCAGTTTCGAAAGCGATGAGGGATCGGCCAGCCAGGGA
GGCGATACCTTCGAGGCGGAGAACAGCGTCGACGAAAGCTACGGACACAT
TGACACGCGTAATGTGGTTATGAAGAAGGTGATTAGCATCGATGGCGCCA
TCAAAATGGAACCAGAATCGAAAGCGAACATGATAGTGCAGTACCTTAAG
GACGGAGCGAACAACATAAGCGCCAAGATCGAGATACTGCCCGACGCACT
AGATGAGCTCGACCCACATTCACACACTGCTTATTCATCCACACCTTTGC
CGAAAGTTCGACAGCCGCAGATCACGAATATTCGTAGGCGACGCGATGTA
GCAGAGCCAGCAAAGGGCGCCCAGCCGGACATGGACCTCTCAAAGATTTG
TACCCTGAGATCTGCCAAGGGGCACGAACTGCTGTGCGTCGATGGCTATA
TATACCATGCCAAGAACCGTGGCGTCATCTCGCGCAACTATTGGGTGTGC
ATCAAAAGCCGCGATCCGGACATCAATTGCAAGAGCCGCATCTCGACGGC
CACCCAAAAGGATGGCTCTATTCGTGTGCTCCGTGTTTACAACAGTCATA
GCCATCCTTTCAGCGAGGACGACATCAAGCGGAGACTCTACAACGAGATC
AACAAGAAGAACAACAAGAACCTAAAGTTTCGGCCGCTGCACTTTATCGG
CAAATCGTTGGATCAGATTCAGCAGGAGTATGGTGATTTGGCCATCGAGC
GCCTGAATGTGTCTAATATCAGCAGCGACATTGTGGTTCACAAGAAGCCT
CGAGTTAGCGGCAGTAATAATAGCAGATCTGCATCATTATCCGTGTCCCA
CAGAGCGGACTCTCACCATGAGGAAGATGATGTTGTTATCGTGGAGGAAG
AGTACCAGGAGCAAGAGGAAGGCGTCGAAATGACCATGGAGGGCGATCAA
CAATACATGGATGTGGACAACACAGATGGGATCATTGAGGTTGTCGAGGA
AGTAGCCGATGAAATGGAAAGCTACGGCTCTATTGTACCCATCTACACAA
TGAAACTCTACGCCGTATCCGATGGTCCGCCTTCCCTGGCCGTTCGCATG
ACCCTGAAGGCCTTGGATATACAATATCAACTCATCAATGTGGACTTTTG
CGCCATGGAACATCGCTCTGAGGAGTACTCGAAGATGAATCCGCAAAAGG
AGATACCCGTGCTGGACGACGACGGTTTCTATCTATCGGAGAGCATTGCC
ATTATGCAATACCTCTGCGACAAGTACGCGCCGGATTCAACGCTATATCC
GCAGGACGTCAATGTGAGAGCAGTAATCAATCAGCGGCTATGCTTTAACA
TGGGATTCTACTATGCCCCCATATCCGCCCACAGCATGGCGCCCATTTTC
TTCGACTACAAACGTACGCCCATGTCGCTAAAGAAGGTGCAGAACGCACT
TGATGTGTTCGAAACCTATTTGCAGCGACTGGGCACTAAGTACGCGGCAG
GCGAGAACATAACCATTGCAGACTTCGCTCTCATTTCGGCCACGATCTGC
TTGGAGGCAATTAACTTTGACTTGCACCAGTTTACGTTGGTGAACAAGTG
GTACGAAACCTTCAAGGTGGAATACCCGCAGCTGTGGGAGATCGCCAACA
GCGGCATGCAGGAGATAAGTGCGTTTGAGCAGAACCCACCGGATATGTCA
CACATGGAACACCCATTCCATCCGACGCGCAAGTCTATGGGCCTGAAGTT
GGCAAGCTTTCTAGACCAT
BO17830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gfzf-RE | 3138 | CG33546-PE | 1..3135 | 17..3151 | 15675 | 100 | Plus |
| gfzf-RB | 3138 | CG33546-PB | 1..3135 | 17..3151 | 15675 | 100 | Plus |
| gfzf-RD | 705 | CG33546-PD | 1..702 | 2450..3151 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gfzf-RE | 3608 | CG33546-RE | 339..3473 | 17..3151 | 15675 | 100 | Plus |
| gfzf-RB | 3910 | CG33546-RB | 339..3473 | 17..3151 | 15675 | 100 | Plus |
| gfzf-RD | 1200 | CG33546-RD | 45..763 | 2433..3151 | 3580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7147678..7149634 | 2436..480 | 9785 | 100 | Minus |
| 3R | 32079331 | 3R | 7146317..7146885 | 3151..2583 | 2845 | 100 | Minus |
| 3R | 32079331 | 3R | 7150165..7150630 | 482..17 | 2330 | 100 | Minus |
| 3R | 32079331 | 3R | 7146945..7147092 | 2584..2437 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:50:15 has no hits.
BO17830.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:10 Download gff for
BO17830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 310..3450 | 17..3159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:50 Download gff for
BO17830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 339..3473 | 17..3153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:38 Download gff for
BO17830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 310..3444 | 17..3153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:37 Download gff for
BO17830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 339..3473 | 17..3153 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:37 Download gff for
BO17830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7146315..7146883 | 2585..3153 | 99 | <- | Minus |
| 3R | 7146945..7147092 | 2437..2584 | 100 | <- | Minus |
| 3R | 7147678..7149632 | 482..2436 | 100 | <- | Minus |
| 3R | 7150166..7150630 | 17..481 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:50 Download gff for
BO17830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2972037..2972605 | 2585..3153 | 99 | <- | Minus |
| arm_3R | 2972667..2972814 | 2437..2584 | 100 | <- | Minus |
| arm_3R | 2973400..2975354 | 482..2436 | 100 | <- | Minus |
| arm_3R | 2975888..2976352 | 17..481 | 100 | | Minus |
BO17830.pep Sequence
Translation from 16 to 3169
> BO17830.pep
METPVEEHGMDLTKVSVVRSAKGVDMLCVDDYLYHFDRIGRNNTYRWLCN
RRKDKSTPCKSRICTMLPDPLDKTRHVVVDVVLAHIHPRCSDHEVNKVAQ
RKRLSVMMMNDAYSTTQPKRARLYERANAGMNPPEFIYGSIDTSTVEASF
QLDFEDKDRVYMLRRRDGRVMVCIDGHLYYLAGKSYKGDIFRWTCVRKRD
IECTARICTEATLAGAHRLHAVDTDAHIHPHYSAAKLMHMFSKHQIVLVE
DENTSDVLAECPNLEYFDPENTFDTAQRGDDLESIIIEECEDNYDIYMRT
DGSQGGGIQGSEELESQEGDDESSLVDPKMHHSSKWPAAFDVIANYLPPP
SHNPLTETDLTKFTFLPSAKGRKVLCLSQHLFHFDSQSRSNGHMFFTCIN
RRDKANTCHVRITLDPVENGPVVLRINGEHTHNPDIKEIARRLKQQAKLD
QDNVHKLQKIEHSEEISFESDEGSASQGGDTFEAENSVDESYGHIDTRNV
VMKKVISIDGAIKMEPESKANMIVQYLKDGANNISAKIEILPDALDELDP
HSHTAYSSTPLPKVRQPQITNIRRRRDVAEPAKGAQPDMDLSKICTLRSA
KGHELLCVDGYIYHAKNRGVISRNYWVCIKSRDPDINCKSRISTATQKDG
SIRVLRVYNSHSHPFSEDDIKRRLYNEINKKNNKNLKFRPLHFIGKSLDQ
IQQEYGDLAIERLNVSNISSDIVVHKKPRVSGSNNSRSASLSVSHRADSH
HEEDDVVIVEEEYQEQEEGVEMTMEGDQQYMDVDNTDGIIEVVEEVADEM
ESYGSIVPIYTMKLYAVSDGPPSLAVRMTLKALDIQYQLINVDFCAMEHR
SEEYSKMNPQKEIPVLDDDGFYLSESIAIMQYLCDKYAPDSTLYPQDVNV
RAVINQRLCFNMGFYYAPISAHSMAPIFFDYKRTPMSLKKVQNALDVFET
YLQRLGTKYAAGENITIADFALISATICLEAINFDLHQFTLVNKWYETFK
VEYPQLWEIANSGMQEISAFEQNPPDMSHMEHPFHPTRKSMGLKLASFLD
H
BO17830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gfzf-PE | 1045 | CG33546-PE | 1..1045 | 1..1045 | 5521 | 100 | Plus |
| gfzf-PB | 1045 | CG33546-PB | 1..1045 | 1..1045 | 5521 | 100 | Plus |
| gfzf-PD | 234 | CG33546-PD | 1..234 | 812..1045 | 1236 | 100 | Plus |
| GstD1-PB | 209 | CG10045-PB | 5..207 | 815..1020 | 329 | 36.4 | Plus |
| GstD1-PA | 209 | CG10045-PA | 5..207 | 815..1020 | 329 | 36.4 | Plus |
