Clone BO17833 Report

Search the DGRC for BO17833

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptSu(dx)-RA
Protein status:BO17833.pep: Imported from assembly
Sequenced Size:2881

Clone Sequence Records

BO17833.complete Sequence

2881 bp assembled on 2009-10-20

GenBank Submission: KX796212

> BO17833.complete
GAAGTTATCAGTCGACATGGCCGATGGAAATGGGCTGCCAGCGGGTGCAG
CTTCCGGCGGCATGGAAGCCGGGCAGACAGTGAATGGAGCGGGATCCGCC
AGCCCCACGCCCACCTCCAGCTCGGGGGCGGGGGCCAGTGGGAGTGCCAA
TCAAGGATATCATCAATTAAGCGTGACAATCGAGGAGGCTTCGCTGCGCA
ACAATGGCTTCCTCAAGCCAAATCCCTACGTGGAGCTCTTGATTGACAGC
AAAAGCAAGCGGAAAACGGACCTGGTGAAGAACAGCTATTTGCCCAAGTG
GAACGAGGAGTTCACAGTGCTGATTACACCCAATTCAACGCTGCACTTCA
AAGTGCTGGATCACTCCAGTTTCCGTAAAGATGCCATGCTTGGAGAGCGG
ATCATCAACCTGGCGCACATTCTGCAGCACTACAATGGGCGGTGCGAGTT
CCTTGAGCTGACCATCGACCTGTTCGTCACCAGCAAGTCGGACAATCGCC
AGACGAAGAGCGGCGAACTAGTGGCCATCCTCAATGGCCTCAAACTCGAT
ATGAGCAAGCTGCAGATTCAGCCAGTGGCTGGCCAACAGAATGGCAATCC
ACCCGTCCAGGCGGTCAATCCGTCGGTGGTCAGTGATGCGGCCGCCGGAC
GAAGTTGCATGATTTACGGTGGAGTACGGGCACGGATGCGACTACGCTCG
AGCAGTGGAAATAGCAACGGCGGAGAGACCCGCTCTCCTCTGCCGAATGG
AGGTGGAGATCACAGGAGATCTACGCAGGCGCCCCCGGTGTGGGAACAGC
AACAGCAGCAATCCCAGAATCAACAGCAGCCCCTGAGAATGGTCAATGGC
AGTGGGGCGGCCGTGCCGCAGACAGCTCCGTATCCTCAGCAGCCACCAGC
TCCCGCACTAGCTCGTCCTCTAACCCAAGTGTACGGAGCGCTGCCAGAGA
ATACACAACCAGCTGCTGTTTATTTGCCAGCTGGAGGAGGAGCAGCAGTA
GGACCACCTGGAGTAGCAGGCCCACCAATTGAACAGCCAGGAGTTGGACT
GCCCGTGAGCCAAAGCACAGATCCGCAACTGCAGACACAACCAGCGGATG
ATGAGCCGCTGCCTGCAGGGTGGGAAATCCGTCTGGACCAGTACGGTCGC
AGATACTACGTAGATCACAATACACGATCCACATACTGGGAGAAACCGAC
ACCGCTGCCCCCGGGCTGGGAGATCAGGAAGGATGGGCGCGGTCGAGTTT
ACTACGTAGACCACAACACAAGAAAAACTACCTGGCAGCGGCCGAACAGT
GAGCGTCTGATGCACTTCCAGCACTGGCAGGGTCAGCGGGCCCACGTCGT
GTCTCAAGGCAACCAGCGATACCTGTACTCCCAGCAGCAGCAGCAACCAA
CGGCGGTGACAGCCCAGGTGACGCAGGACGACGAGGATGCACTGGGTCCA
CTACCAGATGGCTGGGAGAAGAAGATCCAATCGGACAACAGAGTGTACTT
TGTTAACCACAAGAACCGAACCACCCAGTGGGAGGATCCACGCACGCAGG
GCCAGGAGGTGAGCTTGATCAACGAGGGCCCGCTTCCACCCGGCTGGGAA
ATCCGCTATACAGCCGCCGGTGAGCGCTTCTTCGTAGATCACAACACGAG
ACGAACCACCTTCGAAGATCCTCGACCCGGTGCTCCGAAGGGCGCCAAGG
GAGTGTACGGAGTGCCACGCGCCTACGAACGCAGCTTCCGCTGGAAGCTG
TCGCAGTTCCGGTACTTGTGCCAGAGCAACGCTTTGCCATCGCACATCAA
GATCACGGTGACGCGACAAACCCTGTTCGAGGATTCATACCACCAGATCA
TGCGTCTGCCAGCCTACGAACTGCGAAGGCGGCTCTATATCATATTCCGC
GGCGAGGAGGGACTGGATTATGGTGGTGTATCTCGCGAGTGGTTCTTCTT
GCTCTCCCACGAGGTTCTGAATCCCATGTACTGCTTGTTTGAGTACGCGA
ACAAGAACAACTACAGCCTGCAGATAAATCCCGCCTCGTACGTGAACCCC
GATCACCTGCAGTACTTCAAGTTCATCGGTCGCTTTATTGCGATGGCCCT
GTATCATGGAAGGTTTATCTACAGTGGATTCACAATGCCATTTTACAAGC
GCATGCTGAACAAGAAGTTGACCATCAAGGACATCGAAACGATCGATCCG
GAGTTCTACAACTCACTTATCTGGGTAAAAGATAACAACATCGATGAGTG
TGGATTGGAGCTCTGGTTTAGCGTGGACTTCGAAGTGCTCGGTCAGATAA
TCCATCATGAGTTGAAGGAGAACGGGGAAAAGGAGCGCGTCACGGAGGAG
AACAAGGAGGAGTACATCACCCTCATGACGGAGTGGCGGATGACACGTGG
CATTGAGCAGCAGACAAAGACGTTCCTGGAAGGCTTCAATGAGGTGGTGC
CCCTGGAATGGCTCAAGTACTTTGACGAGCGCGAGCTGGAGCTTATTCTG
TGCGGCATGCAGGACGTGGACGTGGAGGACTGGCAGCGCAACACCATCTA
CAGGCACTACAACCGCAACTCCAAGCAAGTTGTCTGGTTCTGGCAGTTTG
TTCGCGAGACGGATAACGAGAAGCGAGCTCGCCTGCTGCAGTTTGTGACG
GGCACGTGTCGCGTGCCGGTCGGAGGATTCGCCGAGCTGATGGGCTCCAA
CGGGCCGCAGCGCTTCTGCATCGAGAAGGTGGGCAAGGAGACGTGGCTGC
CGCGCTCGCACACCTGCTTCAATCGATTGGACCTGCCGCCGTACAAGAGC
TACGATCAGCTGGTGGAGAAGCTGACCTTTGCCATCGAGGAGACTGAGGG
CTTCTGCCAGGAAGCAAGCTTTCTAGACCAT

BO17833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Su(dx)-RF 2850 CG4244-PF 1..2847 17..2863 14235 100 Plus
Su(dx)-RE 2850 CG4244-PE 1..2847 17..2863 14235 100 Plus
Su(dx)-RA 2850 CG4244-PA 1..2847 17..2863 14235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Su(dx)-RF 3701 CG4244-RF 358..3204 17..2863 14235 100 Plus
Su(dx)-RE 3520 CG4244-RE 177..3023 17..2863 14235 100 Plus
Su(dx)-RA 4612 CG4244-RA 574..3420 17..2863 14235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2040421..2041573 322..1474 5765 100 Plus
2L 23513712 2L 2041645..2042569 1473..2397 4625 100 Plus
2L 23513712 2L 2042911..2043180 2594..2863 1350 100 Plus
2L 23513712 2L 2042652..2042851 2397..2596 1000 100 Plus
2L 23513712 2L 2039992..2040154 17..179 815 100 Plus
2L 23513712 2L 2040217..2040359 180..322 715 100 Plus
Blast to na_te.dros performed 2014-11-27 07:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..7080 793..1110 145 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2415 793..830 127 81.6 Plus
roo 9092 roo DM_ROO 9092bp 1110..1142 798..830 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2336..2373 793..830 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2315..2554 793..1032 117 53.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6878 793..912 117 59.3 Plus

BO17833.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:49:39 Download gff for BO17833.complete
Subject Subject Range Query Range Percent Splice Strand
Su(dx)-RA 268..3114 17..2865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:10 Download gff for BO17833.complete
Subject Subject Range Query Range Percent Splice Strand
Su(dx)-RA 574..3420 17..2865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:57 Download gff for BO17833.complete
Subject Subject Range Query Range Percent Splice Strand
Su(dx)-RA 574..3420 17..2865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:57 Download gff for BO17833.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2039992..2040154 17..179 100 -> Plus
2L 2040217..2040359 180..322 100 -> Plus
2L 2040422..2041573 323..1474 100 -> Plus
2L 2041647..2042569 1475..2397 100 -> Plus
2L 2042653..2042851 2398..2596 100 -> Plus
2L 2042914..2043180 2597..2865 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:10 Download gff for BO17833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2039992..2040154 17..179 100 -> Plus
arm_2L 2040217..2040359 180..322 100 -> Plus
arm_2L 2040422..2041573 323..1474 100 -> Plus
arm_2L 2041647..2042569 1475..2397 100 -> Plus
arm_2L 2042653..2042851 2398..2596 100 -> Plus
arm_2L 2042914..2043180 2597..2865 99   Plus

BO17833.3prime Sequence

755 bp (650 high quality bases) assembled on 2006-10-13

> BO17833.3prime
ATGGTCTAGAAAGCTTGCTTCCTGGCAGAAGCCCTCAGTCTCCTCGATGG
CAAAGGTCAGCTTCTCCACCAGCTGATCGTAGCTCTTGTACGGCGGCAGG
TCCAATCGATTGAAGCAGGTGTGCGAGCGCGGCAGCCACGTCTCCTTGCC
CACCTTCTCGATGCAGAAGCGCTGCGGCCCGTTGGAGCCCATCAGCTCGG
CGAATCCTCCGACCGGCACGCGACACGTGCCCGTCACAAACTGCAGCAGG
CGAGCTCGCTTCTCGTTATCCGTCTCGCGAACAAACTGCCAGAACCAGAC
AACTTGCTTGGAGTTGCGGTTGTAGTGCCTGTAGATGGTGTTGCGCTGCC
AGTCCTCCACGTCCACGTCCTGCATGCCGCACAGAATAAGCTCCAGCTCG
CGCTCGTCAAAGTACTTGAGCCATTCCAGGGGCACCACCTCATTGAAGCC
TTCCAGGAACGTCTTTGTCTGCTGCTCAATGCCACGTGTCATCCGCCACT
CCGTCATGAGGGTGATGTACTCCTCCTTGTTCTCCTCCGTGACGCGCTCC
TTTTCCCCGTTCTCCTTCAACTCATGATGGATTATCTGACCGAGCACTTC
GAAGTCCACGCTAAACCAGAGCTCCAATCCACACTCATCGATGTTGTTAT
CTTTTACCCAAATAAGTGAGTTGTAAAACTCCGGATCGATCGTTTCGATG
TCCTTGAAGGTCAACTTCTTGTTCAGCATGCGCTTGTAAAATGGCATTGT
GAATC

BO17833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4244-PC 2850 Su(dx)-RC 2111..2847 755..19 3610 99.5 Minus
CG4244-PB 2850 Su(dx)-RB 2111..2847 755..19 3610 99.5 Minus
CG4244-PA 2850 Su(dx)-RA 2111..2847 755..19 3610 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Su(dx)-RF 3701 CG4244-RF 2468..3204 755..19 3640 99.6 Minus
Su(dx)-RE 3520 CG4244-RE 2287..3023 755..19 3640 99.6 Minus
Su(dx)-RA 4612 CG4244-RA 2684..3420 755..19 3640 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2042911..2043180 288..19 1350 100 Minus
2L 23513712 2L 2042299..2042569 755..485 1310 98.9 Minus
2L 23513712 2L 2042652..2042851 485..286 1000 100 Minus
Blast to na_te.dros performed on 2015-02-05 01:32:11 has no hits.

BO17833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:13:59 Download gff for BO17833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4244-PA 2111..2850 16..755 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:40 Download gff for BO17833.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(dx)-RA 2684..3420 19..755 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:49 Download gff for BO17833.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(dx)-RA 2684..3420 19..755 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:49 Download gff for BO17833.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2042299..2042569 485..755 98 -> Minus
2L 2042653..2042851 286..484 100 -> Minus
2L 2042914..2043180 19..285 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:40 Download gff for BO17833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2042299..2042569 485..755 98 -> Minus
arm_2L 2042653..2042851 286..484 100 -> Minus
arm_2L 2042914..2043180 19..285 100   Minus

BO17833.5prime Sequence

755 bp (699 high quality bases) assembled on 2006-10-13

> BO17833.5prime
GAAGTTATCAGTCGACATGGCCGATGGAAATGGGCTGCCAGCGGGTGCAG
CTTCCGGCGGCATGGAAGCCGGGCAGACAGTGAATGGAGCGGGATCCGCC
AGCCCCACGCCCACCTCCAGCTCGGGGGCGGGGGCCAGTGGGAGTGCCAA
TCAAGGATATCATCAATTAAGCGTGACAATCGAGGAGGCTTCGCTGCGCA
ACAATGGCTTCCTCAAGCCAAATCCCTACGTGGAGCTCTTGATTGACAGC
AAAAGCAAGCGGAAAACGGACCTGGTGAAGAACAGCTATTTGCCCAAGTG
GAACGAGGAGTTCACAGTGCTGATTACACCCAATTCAACGCTGCACTTCA
AAGTGCTGGATCACTCCAGTTTCCGTAAAGATGCCATGCTTGGAGAGCGG
ATCATCAACCTGGCGCACATTCTGCAGCACTACAATGGGCGGTGCGAGTT
CCTTGAGCTGACCATCGACCTGTTCGTCACCAGCAAGTCGGACAATCGCC
AGACGAAGAGCGGCGAACTAGTGGCCATCCTCAATGGCCTCAAACTCGAT
ATGAGCAAGCTGCAGATTCAGCCAGTGGCTGGCCAACAGAATGGCAATCC
ACCCGTCCAGGCGGTCAATCCGTCGGTGGTCAGTGATGCGGCCGCCGGAC
GAAGTTGCATGATTTACGGTGGAGTACGGGCACGGATGCGACTACGCTCG
AGCAGTGAAATAGCAACGGCGGAGAGACCCGCTCTCCTCTGCCGAAAGGA
GGTGG

BO17833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4244-PC 2850 Su(dx)-RC 1..740 17..755 3635 99.7 Plus
CG4244-PB 2850 Su(dx)-RB 1..740 17..755 3635 99.7 Plus
CG4244-PA 2850 Su(dx)-RA 1..740 17..755 3635 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Su(dx)-RF 3701 CG4244-RF 358..1097 17..755 3660 99.7 Plus
Su(dx)-RE 3520 CG4244-RE 177..916 17..755 3660 99.7 Plus
Su(dx)-RA 4612 CG4244-RA 574..1313 17..755 3660 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2040421..2040855 322..755 2110 99.5 Plus
2L 23513712 2L 2039992..2040154 17..179 815 100 Plus
2L 23513712 2L 2040217..2040359 180..322 715 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:02:13 has no hits.

BO17833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:00 Download gff for BO17833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4244-PA 1..740 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:34:21 Download gff for BO17833.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(dx)-RA 568..1313 9..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:20 Download gff for BO17833.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(dx)-RA 568..1313 9..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:20 Download gff for BO17833.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2039986..2040154 9..179 97 -> Plus
2L 2040217..2040359 180..322 100 -> Plus
2L 2040422..2040855 323..755 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:21 Download gff for BO17833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2039986..2040154 9..179 97 -> Plus
arm_2L 2040217..2040359 180..322 100 -> Plus
arm_2L 2040422..2040855 323..755 99   Plus

BO17833.pep Sequence

Translation from 16 to 2881

> BO17833.pep
MADGNGLPAGAASGGMEAGQTVNGAGSASPTPTSSSGAGASGSANQGYHQ
LSVTIEEASLRNNGFLKPNPYVELLIDSKSKRKTDLVKNSYLPKWNEEFT
VLITPNSTLHFKVLDHSSFRKDAMLGERIINLAHILQHYNGRCEFLELTI
DLFVTSKSDNRQTKSGELVAILNGLKLDMSKLQIQPVAGQQNGNPPVQAV
NPSVVSDAAAGRSCMIYGGVRARMRLRSSSGNSNGGETRSPLPNGGGDHR
RSTQAPPVWEQQQQQSQNQQQPLRMVNGSGAAVPQTAPYPQQPPAPALAR
PLTQVYGALPENTQPAAVYLPAGGGAAVGPPGVAGPPIEQPGVGLPVSQS
TDPQLQTQPADDEPLPAGWEIRLDQYGRRYYVDHNTRSTYWEKPTPLPPG
WEIRKDGRGRVYYVDHNTRKTTWQRPNSERLMHFQHWQGQRAHVVSQGNQ
RYLYSQQQQQPTAVTAQVTQDDEDALGPLPDGWEKKIQSDNRVYFVNHKN
RTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFE
DPRPGAPKGAKGVYGVPRAYERSFRWKLSQFRYLCQSNALPSHIKITVTR
QTLFEDSYHQIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEV
LNPMYCLFEYANKNNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRF
IYSGFTMPFYKRMLNKKLTIKDIETIDPEFYNSLIWVKDNNIDECGLELW
FSVDFEVLGQIIHHELKENGEKERVTEENKEEYITLMTEWRMTRGIEQQT
KTFLEGFNEVVPLEWLKYFDERELELILCGMQDVDVEDWQRNTIYRHYNR
NSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGGFAELMGSNGPQRF
CIEKVGKETWLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEETEGFCQEA
SFLDH

BO17833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Su(dx)-PF 949 CG4244-PF 1..949 1..949 5106 100 Plus
Su(dx)-PE 949 CG4244-PE 1..949 1..949 5106 100 Plus
Su(dx)-PA 949 CG4244-PA 1..949 1..949 5106 100 Plus
Su(dx)-PB 949 CG4244-PB 1..949 1..949 5106 100 Plus
Su(dx)-PC 949 CG4244-PC 1..949 1..949 5106 100 Plus