Clone Sequence Records
BO17834.3prime Sequence
687 bp (664 high quality bases) assembled on 2006-10-13
> BO17834.3prime
ATGGTCTAGAAAGCTTGCGGCCTCATCGTCTTGCAGCTCAAGGAATTGTG
TGCAGATGTCTCGACTGCACTCGCCTTTATTGTTAAATAGGAATTTATAA
TAGTGGCCGTCTGCACAAATGGCCACAACCGAATTAGGATCGGCGCCAAA
GGCACATACACATCGAGGTCCCTGGGGTATTGAAAACTTGACAAAACTCC
ACTGGCTCGAGAAATACTTGGGTATTATGGGCAGCGAGGATTCACGGGGC
TTGTTGTCCTCCAGGTTGAAGACGTGTATGGTGCCATGATCGGAGGCGAC
GACCACCATTGTGGACTGGTGGTTAAAGTTGATGCAGAATATGTTGGCGT
GGTTGCTTCCGCGCCTCAGCTCTGATACCTTCTTGCCACTTTCCGTATCG
AAGATACGGATGAGGGTGCCCTTTTCCCCGGCGGTGGCTAGTCGCGTGCC
TTGCAGATTAAGGGCAATACAGCTGATACCAGCCTCGTGGGCGATCACCT
CAAGCGGCGCCCGCTCTGTGTTGGCCAGATCAACAATTTGAACGTGGCCA
GTTCGACGGCCGGGGAATGCGAGGAGGCTCTTATTGCTGTGCGGGCACAG
CACACACAGCCCGTTGGGATTTGAGCTGGTCTCAAAGACGTGCAGCTGCT
GTGGTTGCTGAATGAAAGTGAACACCTTAATCCCGCC
BO17834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11975-PA | 1023 | CG11975-RA | 357..1017 | 682..22 | 3255 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11975-RB | 1733 | CG11975-RB | 483..1148 | 687..22 | 3285 | 99.5 | Minus |
CG11975-RA | 1360 | CG11975-RA | 483..1148 | 687..22 | 3285 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8993896..8994460 | 687..123 | 2780 | 99.5 | Minus |
3R | 32079331 | 3R | 8994526..8994627 | 123..22 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:32:29 has no hits.
BO17834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:01 Download gff for
BO17834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-PA | 352..1023 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:41 Download gff for
BO17834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-RA | 483..1151 | 19..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:50 Download gff for
BO17834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-RA | 483..1151 | 19..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:50 Download gff for
BO17834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8993896..8994460 | 123..687 | 99 | -> | Minus |
3R | 8994527..8994630 | 19..122 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:41 Download gff for
BO17834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4819618..4820182 | 123..687 | 99 | -> | Minus |
arm_3R | 4820249..4820352 | 19..122 | 99 | | Minus |
BO17834.5prime Sequence
633 bp (625 high quality bases) assembled on 2006-10-13
> BO17834.5prime
GAAGTTATCAGTCGACATGAACCTCACAGAGCAAAACCCATATGGAAACG
GGCTGCTCTACGCAGCCTTCAATCAAGACCAAGGATGCTTCGCGTGCGCG
ACGGACACCGGATTCCGGGTCTACAACTGTGATCCGCTGAAGGAGAAGGA
GCGCCAATACTTTCCAGAGGGTGGTCTCAGCCATGTGGAGATGCTGTTTC
GTTGCAATTACTTAGCCCTGGTTGGAGGCGGCATCCGGCCGCTGTACCCG
CCCAACAAGGTGATCGTGTGGGATGACCTGAAGAAGTCCCCGGCCATATC
GCTGGACTTCAATCAGCCCGTGCGGGCGGTACGACTGCGTCGGGATCGCA
TCGTGGTCGTGTTGGAGGGCGTGATTAAGGTGTTCACCTTCACTCAGCAA
CCACAGCAGCTGCACGTCTTTGAGACCAGCTCAAATCCCAACGGGCTGTG
TGTGCTGTGCCCGCACAGCAATAAGAGCCTCCTCGCATTCCCCGGCCGTC
GAACTGGCCACGTTCAAATTGTTGATCTGGCCAACACAGAGCGGGCGCCG
CTTGAGGTGATCGCCCACGAGGCTGGTATCAGCTGTATTGCCCTTAATCT
GCAAGGCACGCGACTAGCCACCGCCGGGGGAAA
BO17834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11975-PA | 1023 | CG11975-RA | 1..613 | 17..629 | 3065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11975-RB | 1733 | CG11975-RB | 132..748 | 17..633 | 3070 | 99.8 | Plus |
CG11975-RA | 1360 | CG11975-RA | 132..748 | 17..633 | 3070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8993698..8994161 | 170..633 | 2305 | 99.8 | Plus |
3R | 32079331 | 3R | 8993534..8993624 | 82..172 | 455 | 100 | Plus |
3R | 32079331 | 3R | 8993384..8993451 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5793..5840 | 239..286 | 141 | 77.1 | Plus |
BO17834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:02 Download gff for
BO17834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-PA | 1..613 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:34:23 Download gff for
BO17834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-RA | 126..744 | 10..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:27 Download gff for
BO17834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-RA | 126..744 | 10..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:27 Download gff for
BO17834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8993378..8993450 | 10..83 | 96 | -> | Plus |
3R | 8993536..8993622 | 84..170 | 100 | -> | Plus |
3R | 8993699..8994157 | 171..630 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:23 Download gff for
BO17834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4819100..4819172 | 10..83 | 96 | -> | Plus |
arm_3R | 4819258..4819344 | 84..170 | 100 | -> | Plus |
arm_3R | 4819421..4819879 | 171..630 | 99 | | Plus |
BO17834.complete Sequence
1054 bp assembled on 2008-08-14
GenBank Submission: FJ634233
> BO17834.complete
GAAGTTATCAGTCGACATGAACCTCACAGAGCAAAACCCATATGGAAACG
GGCTGCTCTACGCAGCCTTCAATCAAGACCAAGGATGCTTCGCGTGCGCG
ACGGACACCGGATTCCGGGTCTACAACTGTGATCCGCTGAAGGAGAAGGA
GCGCCAATACTTTCCAGAGGGTGGTCTCAGCCATGTGGAGATGCTGTTTC
GTTGCAATTACTTAGCCCTGGTTGGAGGCGGCATCCGGCCGCTGTACCCG
CCCAACAAGGTGATCGTGTGGGATGACCTGAAGAAGTCCCCGGCCATATC
GCTGGACTTCAATCAGCCCGTGCGGGCGGTACGACTGCGTCGGGATCGCA
TCGTGGTCGTGTTGGAGGGCGTGATTAAGGTGTTCACCTTCACTCAGCAA
CCACAGCAGCTGCACGTCTTTGAGACCAGCTCAAATCCCAACGGGCTGTG
TGTGCTGTGCCCGCACAGCAATAAGAGCCTCCTCGCATTCCCCGGCCGTC
GAACTGGCCACGTTCAAATTGTTGATCTGGCCAACACAGAGCGGGCGCCG
CTTGAGGTGATCGCCCACGAGGCTGGTATCAGCTGTATTGCCCTTAATCT
GCAAGGCACGCGACTAGCCACCGCCGGGGAAAAGGGCACCCTCATCCGTA
TCTTCGATACGGAAAGTGGCAAGAAGGTATCAGAGCTGAGGCGCGGAAGC
AACCACGCCAACATATTCTGCATCAACTTTAACCACCAGTCCACAATGGT
GGTCGTCGCCTCCGATCATGGCACCATACACGTCTTCAACCTGGAGGACA
ACAAGCCCCGTGAATCCTCGCTGCCCATAATACCCAAGTATTTCTCGAGC
CAGTGGAGTTTTGTCAAGTTTTCAATACCCCAGGGACCTCGATGTGTATG
TGCCTTTGGCGCCGATCCTAATTCGGTTGTGGCCATTTGTGCAGACGGCC
ACTATTATAAATTCCTATTTAACAATAAAGGCGAGTGCAGTCGAGACATC
TGCACACAATTCCTTGAGCTGCAAGACGATGAGACCGCAAGCTTTCTAGA
CCAT
BO17834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11975-RB | 1023 | CG11975-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG11975-RA | 1023 | CG11975-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11975-RB | 1733 | CG11975-RB | 132..1151 | 17..1036 | 5100 | 100 | Plus |
CG11975-RA | 1360 | CG11975-RA | 132..1151 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8993698..8994460 | 170..932 | 3815 | 100 | Plus |
3R | 32079331 | 3R | 8994526..8994630 | 932..1036 | 525 | 100 | Plus |
3R | 32079331 | 3R | 8993534..8993624 | 82..172 | 455 | 100 | Plus |
3R | 32079331 | 3R | 8993384..8993451 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5793..5840 | 239..286 | 141 | 77.1 | Plus |
BO17834.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:50 Download gff for
BO17834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-RA | 122..1147 | 10..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:07 Download gff for
BO17834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-RA | 132..1151 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:26 Download gff for
BO17834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-RA | 128..1147 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:27 Download gff for
BO17834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11975-RA | 132..1151 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:27 Download gff for
BO17834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8993384..8993450 | 17..83 | 100 | -> | Plus |
3R | 8993536..8993622 | 84..170 | 100 | -> | Plus |
3R | 8993699..8994460 | 171..932 | 100 | -> | Plus |
3R | 8994527..8994630 | 933..1038 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:07 Download gff for
BO17834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4819106..4819172 | 17..83 | 100 | -> | Plus |
arm_3R | 4819258..4819344 | 84..170 | 100 | -> | Plus |
arm_3R | 4819421..4820182 | 171..932 | 100 | -> | Plus |
arm_3R | 4820249..4820352 | 933..1038 | 98 | | Plus |
BO17834.pep Sequence
Translation from 16 to 1054
> BO17834.pep
MNLTEQNPYGNGLLYAAFNQDQGCFACATDTGFRVYNCDPLKEKERQYFP
EGGLSHVEMLFRCNYLALVGGGIRPLYPPNKVIVWDDLKKSPAISLDFNQ
PVRAVRLRRDRIVVVLEGVIKVFTFTQQPQQLHVFETSSNPNGLCVLCPH
SNKSLLAFPGRRTGHVQIVDLANTERAPLEVIAHEAGISCIALNLQGTRL
ATAGEKGTLIRIFDTESGKKVSELRRGSNHANIFCINFNHQSTMVVVASD
HGTIHVFNLEDNKPRESSLPIIPKYFSSQWSFVKFSIPQGPRCVCAFGAD
PNSVVAICADGHYYKFLFNNKGECSRDICTQFLELQDDETASFLDH
BO17834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11975-PB | 340 | CG11975-PB | 1..340 | 1..340 | 1816 | 100 | Plus |
CG11975-PA | 340 | CG11975-PA | 1..340 | 1..340 | 1816 | 100 | Plus |
Atg18a-PG | 377 | CG7986-PG | 2..286 | 1..285 | 291 | 29.8 | Plus |
Atg18a-PC | 377 | CG7986-PC | 2..286 | 1..285 | 291 | 29.8 | Plus |
Atg18a-PB | 377 | CG7986-PB | 2..286 | 1..285 | 291 | 29.8 | Plus |