Clone BO17834 Report

Search the DGRC for BO17834

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG11975-RA
Protein status:BO17834.pep: Imported from assembly
Sequenced Size:1054

Clone Sequence Records

BO17834.3prime Sequence

687 bp (664 high quality bases) assembled on 2006-10-13

> BO17834.3prime
ATGGTCTAGAAAGCTTGCGGCCTCATCGTCTTGCAGCTCAAGGAATTGTG
TGCAGATGTCTCGACTGCACTCGCCTTTATTGTTAAATAGGAATTTATAA
TAGTGGCCGTCTGCACAAATGGCCACAACCGAATTAGGATCGGCGCCAAA
GGCACATACACATCGAGGTCCCTGGGGTATTGAAAACTTGACAAAACTCC
ACTGGCTCGAGAAATACTTGGGTATTATGGGCAGCGAGGATTCACGGGGC
TTGTTGTCCTCCAGGTTGAAGACGTGTATGGTGCCATGATCGGAGGCGAC
GACCACCATTGTGGACTGGTGGTTAAAGTTGATGCAGAATATGTTGGCGT
GGTTGCTTCCGCGCCTCAGCTCTGATACCTTCTTGCCACTTTCCGTATCG
AAGATACGGATGAGGGTGCCCTTTTCCCCGGCGGTGGCTAGTCGCGTGCC
TTGCAGATTAAGGGCAATACAGCTGATACCAGCCTCGTGGGCGATCACCT
CAAGCGGCGCCCGCTCTGTGTTGGCCAGATCAACAATTTGAACGTGGCCA
GTTCGACGGCCGGGGAATGCGAGGAGGCTCTTATTGCTGTGCGGGCACAG
CACACACAGCCCGTTGGGATTTGAGCTGGTCTCAAAGACGTGCAGCTGCT
GTGGTTGCTGAATGAAAGTGAACACCTTAATCCCGCC

BO17834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-PA 1023 CG11975-RA 357..1017 682..22 3255 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-RB 1733 CG11975-RB 483..1148 687..22 3285 99.5 Minus
CG11975-RA 1360 CG11975-RA 483..1148 687..22 3285 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8993896..8994460 687..123 2780 99.5 Minus
3R 32079331 3R 8994526..8994627 123..22 510 100 Minus
Blast to na_te.dros performed on 2015-02-05 01:32:29 has no hits.

BO17834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:01 Download gff for BO17834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-PA 352..1023 18..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:41 Download gff for BO17834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 483..1151 19..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:50 Download gff for BO17834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 483..1151 19..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:50 Download gff for BO17834.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8993896..8994460 123..687 99 -> Minus
3R 8994527..8994630 19..122 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:41 Download gff for BO17834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4819618..4820182 123..687 99 -> Minus
arm_3R 4820249..4820352 19..122 99   Minus

BO17834.5prime Sequence

633 bp (625 high quality bases) assembled on 2006-10-13

> BO17834.5prime
GAAGTTATCAGTCGACATGAACCTCACAGAGCAAAACCCATATGGAAACG
GGCTGCTCTACGCAGCCTTCAATCAAGACCAAGGATGCTTCGCGTGCGCG
ACGGACACCGGATTCCGGGTCTACAACTGTGATCCGCTGAAGGAGAAGGA
GCGCCAATACTTTCCAGAGGGTGGTCTCAGCCATGTGGAGATGCTGTTTC
GTTGCAATTACTTAGCCCTGGTTGGAGGCGGCATCCGGCCGCTGTACCCG
CCCAACAAGGTGATCGTGTGGGATGACCTGAAGAAGTCCCCGGCCATATC
GCTGGACTTCAATCAGCCCGTGCGGGCGGTACGACTGCGTCGGGATCGCA
TCGTGGTCGTGTTGGAGGGCGTGATTAAGGTGTTCACCTTCACTCAGCAA
CCACAGCAGCTGCACGTCTTTGAGACCAGCTCAAATCCCAACGGGCTGTG
TGTGCTGTGCCCGCACAGCAATAAGAGCCTCCTCGCATTCCCCGGCCGTC
GAACTGGCCACGTTCAAATTGTTGATCTGGCCAACACAGAGCGGGCGCCG
CTTGAGGTGATCGCCCACGAGGCTGGTATCAGCTGTATTGCCCTTAATCT
GCAAGGCACGCGACTAGCCACCGCCGGGGGAAA

BO17834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-PA 1023 CG11975-RA 1..613 17..629 3065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-RB 1733 CG11975-RB 132..748 17..633 3070 99.8 Plus
CG11975-RA 1360 CG11975-RA 132..748 17..633 3070 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8993698..8994161 170..633 2305 99.8 Plus
3R 32079331 3R 8993534..8993624 82..172 455 100 Plus
3R 32079331 3R 8993384..8993451 17..84 340 100 Plus
Blast to na_te.dros performed 2015-02-12 11:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5793..5840 239..286 141 77.1 Plus

BO17834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:02 Download gff for BO17834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-PA 1..613 17..630 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:34:23 Download gff for BO17834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 126..744 10..630 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:27 Download gff for BO17834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 126..744 10..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:27 Download gff for BO17834.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8993378..8993450 10..83 96 -> Plus
3R 8993536..8993622 84..170 100 -> Plus
3R 8993699..8994157 171..630 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:23 Download gff for BO17834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4819100..4819172 10..83 96 -> Plus
arm_3R 4819258..4819344 84..170 100 -> Plus
arm_3R 4819421..4819879 171..630 99   Plus

BO17834.complete Sequence

1054 bp assembled on 2008-08-14

GenBank Submission: FJ634233

> BO17834.complete
GAAGTTATCAGTCGACATGAACCTCACAGAGCAAAACCCATATGGAAACG
GGCTGCTCTACGCAGCCTTCAATCAAGACCAAGGATGCTTCGCGTGCGCG
ACGGACACCGGATTCCGGGTCTACAACTGTGATCCGCTGAAGGAGAAGGA
GCGCCAATACTTTCCAGAGGGTGGTCTCAGCCATGTGGAGATGCTGTTTC
GTTGCAATTACTTAGCCCTGGTTGGAGGCGGCATCCGGCCGCTGTACCCG
CCCAACAAGGTGATCGTGTGGGATGACCTGAAGAAGTCCCCGGCCATATC
GCTGGACTTCAATCAGCCCGTGCGGGCGGTACGACTGCGTCGGGATCGCA
TCGTGGTCGTGTTGGAGGGCGTGATTAAGGTGTTCACCTTCACTCAGCAA
CCACAGCAGCTGCACGTCTTTGAGACCAGCTCAAATCCCAACGGGCTGTG
TGTGCTGTGCCCGCACAGCAATAAGAGCCTCCTCGCATTCCCCGGCCGTC
GAACTGGCCACGTTCAAATTGTTGATCTGGCCAACACAGAGCGGGCGCCG
CTTGAGGTGATCGCCCACGAGGCTGGTATCAGCTGTATTGCCCTTAATCT
GCAAGGCACGCGACTAGCCACCGCCGGGGAAAAGGGCACCCTCATCCGTA
TCTTCGATACGGAAAGTGGCAAGAAGGTATCAGAGCTGAGGCGCGGAAGC
AACCACGCCAACATATTCTGCATCAACTTTAACCACCAGTCCACAATGGT
GGTCGTCGCCTCCGATCATGGCACCATACACGTCTTCAACCTGGAGGACA
ACAAGCCCCGTGAATCCTCGCTGCCCATAATACCCAAGTATTTCTCGAGC
CAGTGGAGTTTTGTCAAGTTTTCAATACCCCAGGGACCTCGATGTGTATG
TGCCTTTGGCGCCGATCCTAATTCGGTTGTGGCCATTTGTGCAGACGGCC
ACTATTATAAATTCCTATTTAACAATAAAGGCGAGTGCAGTCGAGACATC
TGCACACAATTCCTTGAGCTGCAAGACGATGAGACCGCAAGCTTTCTAGA
CCAT

BO17834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-RB 1023 CG11975-PB 1..1020 17..1036 5100 100 Plus
CG11975-RA 1023 CG11975-PA 1..1020 17..1036 5100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-RB 1733 CG11975-RB 132..1151 17..1036 5100 100 Plus
CG11975-RA 1360 CG11975-RA 132..1151 17..1036 5100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8993698..8994460 170..932 3815 100 Plus
3R 32079331 3R 8994526..8994630 932..1036 525 100 Plus
3R 32079331 3R 8993534..8993624 82..172 455 100 Plus
3R 32079331 3R 8993384..8993451 17..84 340 100 Plus
Blast to na_te.dros performed 2014-11-27 23:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5793..5840 239..286 141 77.1 Plus

BO17834.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:50 Download gff for BO17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 122..1147 10..1036 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:07 Download gff for BO17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 132..1151 17..1038 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:26 Download gff for BO17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 128..1147 17..1038 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:27 Download gff for BO17834.complete
Subject Subject Range Query Range Percent Splice Strand
CG11975-RA 132..1151 17..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:27 Download gff for BO17834.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8993384..8993450 17..83 100 -> Plus
3R 8993536..8993622 84..170 100 -> Plus
3R 8993699..8994460 171..932 100 -> Plus
3R 8994527..8994630 933..1038 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:07 Download gff for BO17834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4819106..4819172 17..83 100 -> Plus
arm_3R 4819258..4819344 84..170 100 -> Plus
arm_3R 4819421..4820182 171..932 100 -> Plus
arm_3R 4820249..4820352 933..1038 98   Plus

BO17834.pep Sequence

Translation from 16 to 1054

> BO17834.pep
MNLTEQNPYGNGLLYAAFNQDQGCFACATDTGFRVYNCDPLKEKERQYFP
EGGLSHVEMLFRCNYLALVGGGIRPLYPPNKVIVWDDLKKSPAISLDFNQ
PVRAVRLRRDRIVVVLEGVIKVFTFTQQPQQLHVFETSSNPNGLCVLCPH
SNKSLLAFPGRRTGHVQIVDLANTERAPLEVIAHEAGISCIALNLQGTRL
ATAGEKGTLIRIFDTESGKKVSELRRGSNHANIFCINFNHQSTMVVVASD
HGTIHVFNLEDNKPRESSLPIIPKYFSSQWSFVKFSIPQGPRCVCAFGAD
PNSVVAICADGHYYKFLFNNKGECSRDICTQFLELQDDETASFLDH

BO17834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11975-PB 340 CG11975-PB 1..340 1..340 1816 100 Plus
CG11975-PA 340 CG11975-PA 1..340 1..340 1816 100 Plus
Atg18a-PG 377 CG7986-PG 2..286 1..285 291 29.8 Plus
Atg18a-PC 377 CG7986-PC 2..286 1..285 291 29.8 Plus
Atg18a-PB 377 CG7986-PB 2..286 1..285 291 29.8 Plus