Clone BO17838 Report

Search the DGRC for BO17838

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptAte1-RB
Protein status:BO17838.pep: validated full length
Sequenced Size:1486

Clone Sequence Records

BO17838.3prime Sequence

710 bp (623 high quality bases) assembled on 2006-10-13

> BO17838.3prime
ATGGTCTAGAAAGCTTGCCTTCACGTATAGCATGCGCCGAGCACACTCTT
TTCCCACGAGCTTGCTGTACTCAATAATGATATCGTCATCGGAGACGGTC
CCACGCAGCTGCCTAAAGTGCTTGTAGTCTGTGCGGGTTCTTCCACCCAA
GAGCAGCTTAACTTCGTCCAAATGCTCCATCAAAAACTCATTCACATCCC
TAGCTGCAGGATCTTCGTTTAAGCGCTGGTATTTATGTTCGTCTAGCTTA
GCACGAATAACATCGGTGAGCGGTAGCCATTCATAGGTCTCCGGGCACAG
CAAGTAAGAGGGGGACAACTTGCCCTTGTAGCGCATTTTGGGACAGGAGT
GTATGTAGAAACCCATATAGTAATACTTGAGAGAAGGCACCTTCTCGGCG
AGCGACTGCACCAATTCAATTTCCCTGAGTGAACCATATGTGCCAAGCGA
TAAAAAGCTATAGTCCGGATCGTAGAAAAAGTACACCGAGCTTACACAAC
CCGGCAGAATGTCAATCACGCCGACGGCAATCAACTTGTCGTCCAGCCAG
TACTGCTGATGAAACGAACCGTAGCCCATTTCGGGACCATCCCAGGGTTT
CTCATTCTGTAGGGGAGTCGCCTGCAGATGCTCCTTGTACGCGTCCTGAT
CCTTTGGCGGATCATTATGTATCGATATCTGATACTTTCTATAGAGCGCA
AAACTCTGGG

BO17838.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9204-PA 1434 Ate1-RA 740..1431 710..19 3410 99.7 Minus
CG9204-PB 1455 Ate1-RB 761..1452 710..19 3410 99.7 Minus
CG9204-PC 1437 Ate1-RC 845..1434 608..19 2950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-RB 1643 CG9204-RB 869..1560 710..19 3430 99.7 Minus
Ate1-RA 1622 CG9204-RA 848..1539 710..19 3430 99.7 Minus
Ate1-RD 1646 CG9204-RD 974..1563 608..19 2950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20255623..20255812 420..609 935 99.5 Plus
2R 25286936 2R 20255408..20255574 261..427 835 100 Plus
2R 25286936 2R 20255197..20255349 109..261 765 100 Plus
2R 25286936 2R 20255886..20255989 607..710 490 98.1 Plus
2R 25286936 2R 20255049..20255141 19..111 465 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:29:05 has no hits.

BO17838.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:04 Download gff for BO17838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9204-PB 761..1455 15..710 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:21:18 Download gff for BO17838.3prime
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 848..1546 11..710 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:39:02 Download gff for BO17838.3prime
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 848..1546 11..710 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:39:02 Download gff for BO17838.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20255042..20255138 11..108 96 <- Plus
2R 20255197..20255348 109..260 100 <- Plus
2R 20255408..20255571 261..424 100 <- Plus
2R 20255628..20255809 425..606 100 <- Plus
2R 20255886..20255989 607..710 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:21:18 Download gff for BO17838.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16143391..16143494 607..710 98   Plus
arm_2R 16142547..16142643 11..108 96 <- Plus
arm_2R 16142702..16142853 109..260 100 <- Plus
arm_2R 16142913..16143076 261..424 100 <- Plus
arm_2R 16143133..16143314 425..606 100 <- Plus

BO17838.5prime Sequence

660 bp (588 high quality bases) assembled on 2006-10-13

> BO17838.5prime
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCATCACTCTTATCT
TCATCAGCCGCAGCACCGATCTCAAACAAGCCGTGCAAGAAAGCCAAGCA
GATGCGATTGGATCGACGGCTGGCCAAGCTGGGAGAATCGGCCTCCTACT
CAACGAAATC

BO17838.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9204-PB 1455 Ate1-RB 1..644 17..660 3170 99.6 Plus
CG9204-PA 1434 Ate1-RA 1..521 17..537 2605 100 Plus
CG9204-PC 1437 Ate1-RC 1..521 17..537 2605 100 Plus
CG9204-PA 1434 Ate1-RA 521..623 558..660 465 98 Plus
CG9204-PC 1437 Ate1-RC 521..623 558..660 465 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-RD 1646 CG9204-RD 109..752 17..660 3190 99.7 Plus
Ate1-RB 1643 CG9204-RB 109..752 17..660 3190 99.7 Plus
Ate1-RC 1625 CG9204-RC 109..731 17..660 2865 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20256690..20257125 536..101 2180 100 Minus
2R 25286936 2R 20256506..20256629 660..537 590 98.4 Minus
2R 25286936 2R 20257196..20257282 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-05 01:33:03 has no hits.

BO17838.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:05 Download gff for BO17838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9204-PB 1..644 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:46 Download gff for BO17838.5prime
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 109..752 17..660 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:53 Download gff for BO17838.5prime
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 109..752 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:53 Download gff for BO17838.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20256506..20256629 537..660 98 <- Minus
2R 20256690..20257124 102..536 100 <- Minus
2R 20257198..20257282 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:46 Download gff for BO17838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16144011..16144134 537..660 98 <- Minus
arm_2R 16144195..16144629 102..536 100 <- Minus
arm_2R 16144703..16144787 17..101 100   Minus

BO17838.complete Sequence

1486 bp assembled on 2006-12-18

GenBank Submission: FJ634234

> BO17838.complete
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCATCACTCTTATCT
TCATCAGCCGCAGCACCGATCTCAAACAAGCCGTGCAAGAAGGCCAAGCA
GATGCGATTGGATCGACGGCTGGCCAAGCTGGGAGACTCGGCCTCCTACT
CAACGAAATCCCTTACCCAGGAAAAGACACTTCGCGACTTCTTGAACACG
GACAGCGAGACAAACAAACATCGGCTAAAGCTGCGCTTAATTCACGTCTA
CGACGACGAGTTCCGGCGGACCCTGCCCCAGAGTTTTGCGCTCTATAAGA
AGTATCAGATATCGATACATAATGATCCGCCAAAGGATCAGGACGCGTAC
AAGGAGCATCTGCAGGCGACTCCCCTACAGAATGAGAAACCCTGGGATGG
TCCCGAAATGGGCTACGGTTCGTTTCATCAGCAGTACTGGCTGGACGACA
AGTTGATTGCCGTCGGCGTGATTGACATTCTGCCGGGTTGTGTAAGCTCG
GTGTACTTTTTCTACGATCCGGACTATAGCTTTTTATCGCTTGGCACATA
TGGTTCACTCAGGGAAATTGAATTGGTGCAGTCGCTCGCCGAGAAGGTGC
CTTCTCTCAAGTATTACTATATGGGTTTCTACATACACTCCTGTCCCAAA
ATGCGCTACAAGGGCAAGTTGTCCCCCTCTTACTTGCTGTGCCCGGAGAC
CTATGAATGGCTACCGCTCACCGATGTTATTCGTGCTAAGCTAGACGAAC
ATAAATACCAGCGCTTAAACGAAGATCCTGCAGCTAGGGATGTGAATGAG
TTTTTGATGGAGCATTTGGACGAAGTTAAGCTGCTCTTGGGTGGAAGAAC
CCGCACAGACTACAAGCACTTTAGGCAGCTGCGTGGGACCGTCTCCGATG
ACGATATCATTATTGAGTACAGCAAGCTCGTGGGAAAAGAGTGTGCTCGG
CGCATGCTATACGTGAAGGCAAGCTTTCTAGACCAT

BO17838.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-RB 1455 CG9204-PB 1..1452 17..1468 7260 100 Plus
Ate1-RA 1434 CG9204-PA 1..1431 17..1468 6910 98.6 Plus
Ate1-RD 1458 CG9204-PD 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-RB 1643 CG9204-RB 109..1560 17..1468 7260 100 Plus
Ate1-RA 1622 CG9204-RA 109..1539 17..1468 6910 98.6 Plus
Ate1-RD 1646 CG9204-RD 109..822 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20256690..20257125 536..101 2180 100 Minus
2R 25286936 2R 20256431..20256629 735..537 980 99.5 Minus
2R 25286936 2R 20255623..20255812 1067..878 935 99.5 Minus
2R 25286936 2R 20255408..20255574 1226..1060 835 100 Minus
2R 25286936 2R 20255197..20255349 1378..1226 765 100 Minus
2R 25286936 2R 20255886..20256037 880..729 760 100 Minus
2R 25286936 2R 20255049..20255141 1468..1376 465 100 Minus
2R 25286936 2R 20257196..20257282 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:03:40 has no hits.

BO17838.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:08 Download gff for BO17838.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 1..1455 17..1472 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:45 Download gff for BO17838.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 100..1558 17..1476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:53 Download gff for BO17838.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 109..1560 17..1470 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:08 Download gff for BO17838.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 100..1558 17..1476 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:50 Download gff for BO17838.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RB 109..1560 17..1470 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:50 Download gff for BO17838.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20255047..20255138 1379..1470 97 <- Minus
2R 20255197..20255348 1227..1378 100 <- Minus
2R 20255408..20255571 1063..1226 100 <- Minus
2R 20255628..20255809 881..1062 100 <- Minus
2R 20255886..20256035 731..880 100 <- Minus
2R 20256436..20256629 537..730 100 <- Minus
2R 20256690..20257124 102..536 100 <- Minus
2R 20257198..20257282 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:53 Download gff for BO17838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16142702..16142853 1227..1378 100 <- Minus
arm_2R 16142552..16142643 1379..1470 97 <- Minus
arm_2R 16142913..16143076 1063..1226 100 <- Minus
arm_2R 16143133..16143314 881..1062 100 <- Minus
arm_2R 16143391..16143540 731..880 100 <- Minus
arm_2R 16143941..16144134 537..730 100 <- Minus
arm_2R 16144195..16144629 102..536 100 <- Minus
arm_2R 16144703..16144787 17..101 100   Minus

BO17838.pep Sequence

Translation from 16 to 1486

> BO17838.pep
MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR
CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE
SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT
AQRKPTKQATAAAVEAPTLGSNKSSLLSSSAAAPISNKPCKKAKQMRLDR
RLAKLGDSASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFR
RTLPQSFALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGY
GSFHQQYWLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLRE
IELVQSLAEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLP
LTDVIRAKLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYK
HFRQLRGTVSDDDIIIEYSKLVGKECARRMLYVKASFLDH

BO17838.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-PB 484 CG9204-PB 1..484 1..484 2576 100 Plus
Ate1-PA 477 CG9204-PA 1..477 1..484 2530 98.6 Plus
Ate1-PD 485 CG9204-PD 1..485 1..484 2366 93 Plus
Ate1-PC 478 CG9204-PC 1..478 1..484 2320 91.6 Plus