Clone Sequence Records
BO17838.3prime Sequence
710 bp (623 high quality bases) assembled on 2006-10-13
> BO17838.3prime
ATGGTCTAGAAAGCTTGCCTTCACGTATAGCATGCGCCGAGCACACTCTT
TTCCCACGAGCTTGCTGTACTCAATAATGATATCGTCATCGGAGACGGTC
CCACGCAGCTGCCTAAAGTGCTTGTAGTCTGTGCGGGTTCTTCCACCCAA
GAGCAGCTTAACTTCGTCCAAATGCTCCATCAAAAACTCATTCACATCCC
TAGCTGCAGGATCTTCGTTTAAGCGCTGGTATTTATGTTCGTCTAGCTTA
GCACGAATAACATCGGTGAGCGGTAGCCATTCATAGGTCTCCGGGCACAG
CAAGTAAGAGGGGGACAACTTGCCCTTGTAGCGCATTTTGGGACAGGAGT
GTATGTAGAAACCCATATAGTAATACTTGAGAGAAGGCACCTTCTCGGCG
AGCGACTGCACCAATTCAATTTCCCTGAGTGAACCATATGTGCCAAGCGA
TAAAAAGCTATAGTCCGGATCGTAGAAAAAGTACACCGAGCTTACACAAC
CCGGCAGAATGTCAATCACGCCGACGGCAATCAACTTGTCGTCCAGCCAG
TACTGCTGATGAAACGAACCGTAGCCCATTTCGGGACCATCCCAGGGTTT
CTCATTCTGTAGGGGAGTCGCCTGCAGATGCTCCTTGTACGCGTCCTGAT
CCTTTGGCGGATCATTATGTATCGATATCTGATACTTTCTATAGAGCGCA
AAACTCTGGG
BO17838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9204-PA | 1434 | Ate1-RA | 740..1431 | 710..19 | 3410 | 99.7 | Minus |
CG9204-PB | 1455 | Ate1-RB | 761..1452 | 710..19 | 3410 | 99.7 | Minus |
CG9204-PC | 1437 | Ate1-RC | 845..1434 | 608..19 | 2950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ate1-RB | 1643 | CG9204-RB | 869..1560 | 710..19 | 3430 | 99.7 | Minus |
Ate1-RA | 1622 | CG9204-RA | 848..1539 | 710..19 | 3430 | 99.7 | Minus |
Ate1-RD | 1646 | CG9204-RD | 974..1563 | 608..19 | 2950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20255623..20255812 | 420..609 | 935 | 99.5 | Plus |
2R | 25286936 | 2R | 20255408..20255574 | 261..427 | 835 | 100 | Plus |
2R | 25286936 | 2R | 20255197..20255349 | 109..261 | 765 | 100 | Plus |
2R | 25286936 | 2R | 20255886..20255989 | 607..710 | 490 | 98.1 | Plus |
2R | 25286936 | 2R | 20255049..20255141 | 19..111 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:29:05 has no hits.
BO17838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:04 Download gff for
BO17838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9204-PB | 761..1455 | 15..710 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:21:18 Download gff for
BO17838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ate1-RA | 848..1546 | 11..710 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:39:02 Download gff for
BO17838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ate1-RA | 848..1546 | 11..710 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:39:02 Download gff for
BO17838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20255042..20255138 | 11..108 | 96 | <- | Plus |
2R | 20255197..20255348 | 109..260 | 100 | <- | Plus |
2R | 20255408..20255571 | 261..424 | 100 | <- | Plus |
2R | 20255628..20255809 | 425..606 | 100 | <- | Plus |
2R | 20255886..20255989 | 607..710 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:21:18 Download gff for
BO17838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16143391..16143494 | 607..710 | 98 | | Plus |
arm_2R | 16142547..16142643 | 11..108 | 96 | <- | Plus |
arm_2R | 16142702..16142853 | 109..260 | 100 | <- | Plus |
arm_2R | 16142913..16143076 | 261..424 | 100 | <- | Plus |
arm_2R | 16143133..16143314 | 425..606 | 100 | <- | Plus |
BO17838.5prime Sequence
660 bp (588 high quality bases) assembled on 2006-10-13
> BO17838.5prime
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCATCACTCTTATCT
TCATCAGCCGCAGCACCGATCTCAAACAAGCCGTGCAAGAAAGCCAAGCA
GATGCGATTGGATCGACGGCTGGCCAAGCTGGGAGAATCGGCCTCCTACT
CAACGAAATC
BO17838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9204-PB | 1455 | Ate1-RB | 1..644 | 17..660 | 3170 | 99.6 | Plus |
CG9204-PA | 1434 | Ate1-RA | 1..521 | 17..537 | 2605 | 100 | Plus |
CG9204-PC | 1437 | Ate1-RC | 1..521 | 17..537 | 2605 | 100 | Plus |
CG9204-PA | 1434 | Ate1-RA | 521..623 | 558..660 | 465 | 98 | Plus |
CG9204-PC | 1437 | Ate1-RC | 521..623 | 558..660 | 465 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ate1-RD | 1646 | CG9204-RD | 109..752 | 17..660 | 3190 | 99.7 | Plus |
Ate1-RB | 1643 | CG9204-RB | 109..752 | 17..660 | 3190 | 99.7 | Plus |
Ate1-RC | 1625 | CG9204-RC | 109..731 | 17..660 | 2865 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20256690..20257125 | 536..101 | 2180 | 100 | Minus |
2R | 25286936 | 2R | 20256506..20256629 | 660..537 | 590 | 98.4 | Minus |
2R | 25286936 | 2R | 20257196..20257282 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:33:03 has no hits.
BO17838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:05 Download gff for
BO17838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9204-PB | 1..644 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:46 Download gff for
BO17838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ate1-RB | 109..752 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:53 Download gff for
BO17838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ate1-RB | 109..752 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:53 Download gff for
BO17838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20256506..20256629 | 537..660 | 98 | <- | Minus |
2R | 20256690..20257124 | 102..536 | 100 | <- | Minus |
2R | 20257198..20257282 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:46 Download gff for
BO17838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16144011..16144134 | 537..660 | 98 | <- | Minus |
arm_2R | 16144195..16144629 | 102..536 | 100 | <- | Minus |
arm_2R | 16144703..16144787 | 17..101 | 100 | | Minus |
BO17838.complete Sequence
1486 bp assembled on 2006-12-18
GenBank Submission: FJ634234
> BO17838.complete
GAAGTTATCAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCC
AGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCAC
GGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGA
TCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGG
AGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAG
CTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCG
CGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAG
CCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCG
CAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGT
TGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTG
CCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCATCACTCTTATCT
TCATCAGCCGCAGCACCGATCTCAAACAAGCCGTGCAAGAAGGCCAAGCA
GATGCGATTGGATCGACGGCTGGCCAAGCTGGGAGACTCGGCCTCCTACT
CAACGAAATCCCTTACCCAGGAAAAGACACTTCGCGACTTCTTGAACACG
GACAGCGAGACAAACAAACATCGGCTAAAGCTGCGCTTAATTCACGTCTA
CGACGACGAGTTCCGGCGGACCCTGCCCCAGAGTTTTGCGCTCTATAAGA
AGTATCAGATATCGATACATAATGATCCGCCAAAGGATCAGGACGCGTAC
AAGGAGCATCTGCAGGCGACTCCCCTACAGAATGAGAAACCCTGGGATGG
TCCCGAAATGGGCTACGGTTCGTTTCATCAGCAGTACTGGCTGGACGACA
AGTTGATTGCCGTCGGCGTGATTGACATTCTGCCGGGTTGTGTAAGCTCG
GTGTACTTTTTCTACGATCCGGACTATAGCTTTTTATCGCTTGGCACATA
TGGTTCACTCAGGGAAATTGAATTGGTGCAGTCGCTCGCCGAGAAGGTGC
CTTCTCTCAAGTATTACTATATGGGTTTCTACATACACTCCTGTCCCAAA
ATGCGCTACAAGGGCAAGTTGTCCCCCTCTTACTTGCTGTGCCCGGAGAC
CTATGAATGGCTACCGCTCACCGATGTTATTCGTGCTAAGCTAGACGAAC
ATAAATACCAGCGCTTAAACGAAGATCCTGCAGCTAGGGATGTGAATGAG
TTTTTGATGGAGCATTTGGACGAAGTTAAGCTGCTCTTGGGTGGAAGAAC
CCGCACAGACTACAAGCACTTTAGGCAGCTGCGTGGGACCGTCTCCGATG
ACGATATCATTATTGAGTACAGCAAGCTCGTGGGAAAAGAGTGTGCTCGG
CGCATGCTATACGTGAAGGCAAGCTTTCTAGACCAT
BO17838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ate1-RB | 1455 | CG9204-PB | 1..1452 | 17..1468 | 7260 | 100 | Plus |
Ate1-RA | 1434 | CG9204-PA | 1..1431 | 17..1468 | 6910 | 98.6 | Plus |
Ate1-RD | 1458 | CG9204-PD | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ate1-RB | 1643 | CG9204-RB | 109..1560 | 17..1468 | 7260 | 100 | Plus |
Ate1-RA | 1622 | CG9204-RA | 109..1539 | 17..1468 | 6910 | 98.6 | Plus |
Ate1-RD | 1646 | CG9204-RD | 109..822 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20256690..20257125 | 536..101 | 2180 | 100 | Minus |
2R | 25286936 | 2R | 20256431..20256629 | 735..537 | 980 | 99.5 | Minus |
2R | 25286936 | 2R | 20255623..20255812 | 1067..878 | 935 | 99.5 | Minus |
2R | 25286936 | 2R | 20255408..20255574 | 1226..1060 | 835 | 100 | Minus |
2R | 25286936 | 2R | 20255197..20255349 | 1378..1226 | 765 | 100 | Minus |
2R | 25286936 | 2R | 20255886..20256037 | 880..729 | 760 | 100 | Minus |
2R | 25286936 | 2R | 20255049..20255141 | 1468..1376 | 465 | 100 | Minus |
2R | 25286936 | 2R | 20257196..20257282 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:03:40 has no hits.
BO17838.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:08 Download gff for
BO17838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ate1-RB | 1..1455 | 17..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:45 Download gff for
BO17838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ate1-RB | 100..1558 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:53 Download gff for
BO17838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ate1-RB | 109..1560 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:08 Download gff for
BO17838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ate1-RB | 100..1558 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:50 Download gff for
BO17838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ate1-RB | 109..1560 | 17..1470 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:50 Download gff for
BO17838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20255047..20255138 | 1379..1470 | 97 | <- | Minus |
2R | 20255197..20255348 | 1227..1378 | 100 | <- | Minus |
2R | 20255408..20255571 | 1063..1226 | 100 | <- | Minus |
2R | 20255628..20255809 | 881..1062 | 100 | <- | Minus |
2R | 20255886..20256035 | 731..880 | 100 | <- | Minus |
2R | 20256436..20256629 | 537..730 | 100 | <- | Minus |
2R | 20256690..20257124 | 102..536 | 100 | <- | Minus |
2R | 20257198..20257282 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:53 Download gff for
BO17838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16142702..16142853 | 1227..1378 | 100 | <- | Minus |
arm_2R | 16142552..16142643 | 1379..1470 | 97 | <- | Minus |
arm_2R | 16142913..16143076 | 1063..1226 | 100 | <- | Minus |
arm_2R | 16143133..16143314 | 881..1062 | 100 | <- | Minus |
arm_2R | 16143391..16143540 | 731..880 | 100 | <- | Minus |
arm_2R | 16143941..16144134 | 537..730 | 100 | <- | Minus |
arm_2R | 16144195..16144629 | 102..536 | 100 | <- | Minus |
arm_2R | 16144703..16144787 | 17..101 | 100 | | Minus |
BO17838.pep Sequence
Translation from 16 to 1486
> BO17838.pep
MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR
CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE
SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT
AQRKPTKQATAAAVEAPTLGSNKSSLLSSSAAAPISNKPCKKAKQMRLDR
RLAKLGDSASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFR
RTLPQSFALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGY
GSFHQQYWLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLRE
IELVQSLAEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLP
LTDVIRAKLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYK
HFRQLRGTVSDDDIIIEYSKLVGKECARRMLYVKASFLDH
BO17838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ate1-PB | 484 | CG9204-PB | 1..484 | 1..484 | 2576 | 100 | Plus |
Ate1-PA | 477 | CG9204-PA | 1..477 | 1..484 | 2530 | 98.6 | Plus |
Ate1-PD | 485 | CG9204-PD | 1..485 | 1..484 | 2366 | 93 | Plus |
Ate1-PC | 478 | CG9204-PC | 1..478 | 1..484 | 2320 | 91.6 | Plus |