Clone BO17839 Report

Search the DGRC for BO17839

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptyrt-RA
Protein status:BO17839.pep: validated full length
Sequenced Size:2950

Clone Sequence Records

BO17839.3prime Sequence

752 bp (749 high quality bases) assembled on 2006-10-13

> BO17839.3prime
ATGGTCTAGAAAGCTTGCCAACTGGGTTGTAATAACGGATTTTCGAATGA
TGGCCGACTCGCGTCCCTTGGGTGCCGATACCACCTCCGAGGAAACCAGC
CAGGGCGATACCATGTCTTTGCTGTTGCTGCTGGACGGAAACGGAATGCG
ACTGCTGTCCGGATAATTGCTCGGAGTTTTCTTTTCACTCGGCGGCGCAT
CGACTTCACTGTGGTTTTGATTCAGATTTAGACTCTGATTCATCTGCTGG
TTGGTTTTCTGCGATTCCAAGCGCTCCTGTTCACTGAGCGTGGAGAAGAG
CAAGGTGCCGGCACTGGGCGTCGAGCTGCCCGCCGGCTTGGCAGCAGTTT
CGGCAGTGATACTGCCGCTGGCATTATTGTTTATGATGTTGTTAATGAAT
ATTTCATTAATGAGTATTTCGGCGGCCGAGGCGTTGCTCAAAGCGGGAGC
CACTGACTCCGAGGCGGTCGTGCTAACGGTGGCGGTGGGGCTGCTGGGCG
TGCTGATGGTGGTCACACTGGTAAGGGTTGTATTGCACCCGCTTCCGGTA
TTATTCAGATTCGCAGGCAGCGACGACGGCGGAGTGAGTGGTGCACTGAA
TCCAGACACAAAGGTGGCATTACTATAGGGTCCATTTCCATTGGTGGTGG
TGGTAGCGGTGCTCGAAGTGCTGGAACTACTGCTACTACCCGTCGACGGC
TTCTGTTCCGGTATGCTGAGCGTCAGCTTATCGCCTCCCACTGATATGTA
GG

BO17839.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9764-PA 2919 yrt-RA 2183..2916 752..19 3670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-RB 4249 CG9764-RB 2775..3508 752..19 3670 100 Minus
yrt-RA 4369 CG9764-RA 2895..3628 752..19 3670 100 Minus
yrt-RD 4464 CG9764-RD 2895..3466 752..181 2860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13430193..13430751 181..739 2795 100 Plus
3R 32079331 3R 13429608..13429771 19..182 820 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:04:11 has no hits.

BO17839.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:06 Download gff for BO17839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9764-PA 2183..2919 15..752 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:20 Download gff for BO17839.3prime
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 2893..3631 11..752 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:10 Download gff for BO17839.3prime
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 2895..3633 11..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:10 Download gff for BO17839.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13429603..13429769 11..180 97 <- Plus
3R 13430193..13430750 181..738 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:20 Download gff for BO17839.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9255325..9255491 11..180 97 <- Plus
arm_3R 9255915..9256472 181..738 100 <- Plus

BO17839.5prime Sequence

837 bp (761 high quality bases) assembled on 2006-10-13

> BO17839.5prime
GAAGTTATCAGTCGACATGCTCCGTTTTCTAAGCCGTCGCAAGGTGCGCA
ACAACTATGTGGATAATTCGAGAGAGGGCGGCGGGGCAACTAGTTCCGCG
GTGGGCGTGGCTGGGGGTGGTGGTGCCATCACCTCCGGCGGCAGCTCACA
AATAAAGCCACAACGCATCGTGGTCAACAAGAACAAAATCGACTGCCGCG
TCATTCTGCTGGACAACACTGACCTTTCCATCGAATTATCGAAAAAGGCA
TTGGGCAGCTTTTTGTACGAACAGGTATTCTACGCACTGGACATCATCGA
GAAGGATTACTTTGGGCTGCAGTTCATGGATGCCAATCACGTCAAGCACT
GGCTAGATCCCACCAAGCCCATCAAGAAGCAGGTCAAAATTGGGCCGCCC
TACACGTTCCGGCTGAAGGTGAAGTTTTACTCTTCGGAACCCAATACACT
GCGCGAAGAGCTGACCCGCTACCTGTTCTTCTTGCAACTGAAACAAGATC
TTCTCGAGGGGCGACTCGACTGTCCGGAGGACAAGGCCACCGAACTCTGT
GCTTTGGCATTGCAGTCTGAACTGGGCGACTATGACAATCAGGAGCATTC
CGCCGCCACCGTCTCGGAGTTCCGTTTTGTGCCCGAGCAAACGGAGGACC
TGGAGATAGCCATACTAGACGAGTACAAGACGTGCCGTGGTCTCACACCT
GCTCAAGCAGAAACGGCATTCCTGAACAAGGCCAAGTGGCTGGATATGTA
CGGTGTTGACATGCACACGGTGCTCGGAAAGGATGGCTGCGAATACCACC
TTGGACTTACGCCCACCGGAATATTTGTTTTCAAACG

BO17839.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9764-PA 2919 yrt-RA 1..816 17..832 4030 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-RD 4464 CG9764-RD 713..1533 17..837 4060 99.6 Plus
yrt-RC 3811 CG9764-RC 713..1533 17..837 4060 99.6 Plus
yrt-RB 4249 CG9764-RB 713..1533 17..837 4060 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13432663..13432933 837..567 1310 98.9 Minus
3R 32079331 3R 13434048..13434272 241..17 1125 100 Minus
3R 32079331 3R 13433065..13433241 566..390 885 100 Minus
3R 32079331 3R 13433307..13433455 389..241 745 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:44:32 has no hits.

BO17839.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:06 Download gff for BO17839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9764-PA 1..821 17..837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:24:38 Download gff for BO17839.5prime
Subject Subject Range Query Range Percent Splice Strand
yrt-RB 704..1531 9..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:24 Download gff for BO17839.5prime
Subject Subject Range Query Range Percent Splice Strand
yrt-RB 706..1533 9..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:24 Download gff for BO17839.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13433065..13433241 390..566 100 <- Minus
3R 13433307..13433454 242..389 100 <- Minus
3R 13434048..13434279 9..241 98   Minus
3R 13432663..13432933 567..837 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:24:38 Download gff for BO17839.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9258385..9258655 567..837 98 <- Minus
arm_3R 9258787..9258963 390..566 100 <- Minus
arm_3R 9259029..9259176 242..389 100 <- Minus
arm_3R 9259770..9260001 9..241 98   Minus

BO17839.complete Sequence

2950 bp assembled on 2007-03-23

GenBank Submission: FJ634235

> BO17839.complete
GAAGTTATCAGTCGACATGCTCCGTTTTCTAAGCCGTCGCAAGGTGCGCA
ACAACTATGTGGATAATTCGAGAGAGGGCGGCGGGGCAACTAGTTCCGCG
GTGGGCGTGGCTGGGGGTGGTGGTGCCATCACCTCCGGCGGCAGCTCACA
AATAAAGCCACAACGCATCGTGGTCAACAAGAACAAAATCGACTGCCGCG
TCATTCTGCTGGACAACACTGACCTTTCCATCGAATTATCGAAAAAGGCA
TTGGGCAGCTTTTTGTACGAACAGGTATTCTACGCACTGGACATCATCGA
GAAGGATTACTTTGGGCTGCAGTTCATGGATGCCAATCACGTCAAGCACT
GGCTAGATCCCACCAAGCCCATCAAGAAGCAGGTCAAAATTGGGCCGCCC
TACACGTTCCGGCTGAAGGTGAAGTTTTACTCTTCGGAACCCAATACACT
GCGCGAAGAGCTGACCCGCTACCTGTTCTTCTTGCAACTGAAACAAGATC
TTCTCGAGGGGCGACTCGACTGTCCGGAGGACAAGGCCACCGAACTCTGT
GCTTTGGCATTGCAGTCTGAACTGGGCGACTATGACAATCAGGAGCATTC
CGCCGCCACCGTCTCGGAGTTCCGTTTTGTGCCCGAGCAAACGGAGGACC
TGGAGATAGCCATACTAGACGAGTACAAGACGTGCCGTGGTCTCACACCT
GCTCAAGCAGAAACGGCATTCCTGAACAAGGCCAAGTGGCTGGATATGTA
CGGTGTTGACATGCACACGGTGCTCGGAAAGGATGGCTGCGAATACCACC
TTGGCCTTACGCCCACCGGAATACTTGTTTTCGAACGCGATCAGAAGATC
GGCCTGTTCTTCTGGCCCAAGATCAGTAAGCTGGATTTCAAGAAAAAGAA
ATTGACTCTTATTGTGATCGAGGATGACGACGAGGGAAGAGAGCAGGAGC
ACACCTTTGTCTTCCGGCTGTACAACGAGAAGGCGTGCAAACACCTGTGG
AAGTGCGCCGTGGAGCACCACACCTTCTTCCGGCTTAGGGCGCCGGTCAA
AGGCCCCTCCGCCCGTCAAAACTTCTTCCGTATGGGCTCTCGCTTCCGGT
ATTCCGGTCGCACCGAGTTCCAGACCACGCAGCAGAGTCGAGCCAGGAGA
ACGGTCCAATTTGAGAGACGACCATCGCAGAGATTTGCTAGCCGTCAGTC
GCACCTGTTGCGCGAACGTCAAAAGGCTTCCCAGGAGGCGGCGGTGTCGG
CTGTGGCCTCGGTTAATGCTCGAGCTGCTGCCGCTGCGGCTGCCGCAGCC
GCATCCCAATCGCCTGCACCGGCTACTCCCTTAGTATCTTCCCAAGTATC
GACACCGACTCCTAACAACGATAACAATAACGACGCCTTCGACTCGCTCA
TTTCCACGGATCAGTTCATCACTGTTACACCTTCGCCTTCGGTGCTTACT
GTCATTCAAAACTCTGCCATTATTGAACCGGATGCGGCTTGCAGCGGCTC
CATCAGCTCCTCATCCCAGGCAGCAGCCAACTTTGCTTCGCTGGGTCGCA
ACTCCCTCAAGTCCAACTTCAGCAACGAGGATCCGGCGTACAGCAAGATT
GGATCTATTGGCAAGGCGTCAGGATTGACTGTGAAATTGGATCCAGACTA
CACACCACCATACTCACCGAACGCCACTAAGAACTTTGATGAAACCAATC
CATTTAGAAATGCAACGAGCTCCCACCACGGCAGCTTTGGCAAGGCTTCC
ATTAGCTCCGGTCAGCTCAGTGTTAAGAGCGGCTTGTCGGATAAAGATAG
AGAGCTAGACTCATTGCTTAAGTCCATTGTCAAAGATCCATCCCCATCAG
TGCTAGCAAACGAAGCCATTAATGATGCTAACAGTATCAGGGTGACTATC
AACAAGACCTTCGACATGGACCACAACACGGAGACACTGAAGCGCCTCTC
GAACGCCAACGAGAAACCCAATAACCAAGTGAAACTGGCCAATGTGAACA
CCACGGCCCTGCCGCCTGGCAACATCAAGTGCAATATTTTAAAGGCTCGC
GTTGAGGAGGAGCTGGGTGCCGGAGGCAACGCCAAGCTTACCAATCAGAT
GTTCGTACCGGCCGCCCACAGCAGCAACATGCACACGAGCAACACAAACA
GCAGCAACAACCATGCACACAGCGATGGACCGGATTCCCTGAACGCCACC
TACATATCAGTGGGAGGCGATAAGCTGACGCTCAGCATACCGGAACAGAA
GCCGTCGACGGGTAGTAGCAGTAGTTCCAGCACTTCGAGCACCGCTACCA
CCACCACCAATGGAAATGGACCCTATAGTAATGCCACCTTTGTGTCTGGA
TTCAGTGCACCACTCACTCCGCCGTCGTCGCTGCCTGCGAATCTGAATAA
TACCGGAAGCGGGTGCAATACAACCCTTACCAGTGTGACCACCATCAGCA
CGCCCAGCAGCCCCACCGCCACCGTTAGCACGACCGCCTCGGAGTCAGTG
GCTCCCGCTTTGAGCAACGCCTCGGCCGCCGAAATACTCATTAATGAAAT
ATTCATTAACAACATCATAAACAATAATGCCAGCGGCAGTATCACTGCCG
AAACTGCTGCCAAGCCGGCGGGCAGCTCGACGCCCAGTGCCGGCACCTTG
CTCTTCTCCACGCTCAGTGAACAGGAGCGCTTGGAATCGCAGAAAACCAA
CCAGCAGATGAATCAGAGTCTAAATCTGAATCAAAACCACAGTGAAGTCG
ATGCGCCGCCGAGTGAAAAGAAAACTCCGAGCAATTATCCGGACAGCAGT
CGCATTCCGTTTCCGTCCAGCAGCAACAGCAAAGACATGGTATCGCCCTG
GCTGGTTTCCTCGGAGGTGGTATCGGCACCCAAGGGACGCGAGTCGGCCA
TCATTCGAAAATCCGTTATTACAACCCAGTTGGCAAGCTTTCTAGACCAT

BO17839.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-RA 2919 CG9764-PA 1..2916 17..2932 14580 100 Plus
yrt-RD 2760 CG9764-PD 1..2754 17..2770 13770 100 Plus
yrt-RC 2361 CG9764-PC 1..2196 17..2212 10980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-RA 4369 CG9764-RA 713..3628 17..2932 14580 100 Plus
yrt-RD 4464 CG9764-RD 713..3466 17..2770 13770 100 Plus
yrt-RC 3811 CG9764-RC 713..2908 17..2212 10980 100 Plus
yrt-RD 4464 CG9764-RD 3559..3723 2768..2932 825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13431865..13432933 1635..567 5345 100 Minus
3R 32079331 3R 13430193..13430751 2770..2212 2795 100 Minus
3R 32079331 3R 13434048..13434272 241..17 1125 100 Minus
3R 32079331 3R 13433065..13433241 566..390 885 100 Minus
3R 32079331 3R 13430922..13431090 2213..2045 845 100 Minus
3R 32079331 3R 13429608..13429771 2932..2769 820 100 Minus
3R 32079331 3R 13431199..13431356 2045..1888 790 100 Minus
3R 32079331 3R 13433307..13433455 389..241 745 100 Minus
3R 32079331 3R 13431669..13431803 1770..1636 675 100 Minus
3R 32079331 3R 13431414..13431537 1891..1768 620 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:57:43 has no hits.

BO17839.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:02 Download gff for BO17839.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 1..2919 17..2936 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:23 Download gff for BO17839.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 704..3631 9..2940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:05 Download gff for BO17839.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 711..3626 17..2934 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:02 Download gff for BO17839.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 704..3631 9..2940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:47 Download gff for BO17839.complete
Subject Subject Range Query Range Percent Splice Strand
yrt-RA 713..3628 17..2934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:47 Download gff for BO17839.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13431199..13431353 1891..2045 100 <- Minus
3R 13431415..13431534 1771..1890 100 <- Minus
3R 13431669..13431803 1636..1770 100 <- Minus
3R 13429606..13429769 2771..2934 98 <- Minus
3R 13430193..13430750 2213..2770 100 <- Minus
3R 13430923..13431089 2046..2212 100 <- Minus
3R 13431865..13432933 567..1635 100 <- Minus
3R 13433065..13433241 390..566 100 <- Minus
3R 13433307..13433454 242..389 100 <- Minus
3R 13434048..13434272 17..241 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:05 Download gff for BO17839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9259029..9259176 242..389 100 <- Minus
arm_3R 9255328..9255491 2771..2934 98 <- Minus
arm_3R 9255915..9256472 2213..2770 100 <- Minus
arm_3R 9256645..9256811 2046..2212 100 <- Minus
arm_3R 9256921..9257075 1891..2045 100 <- Minus
arm_3R 9257137..9257256 1771..1890 100 <- Minus
arm_3R 9257391..9257525 1636..1770 100 <- Minus
arm_3R 9257587..9258655 567..1635 100 <- Minus
arm_3R 9258787..9258963 390..566 100 <- Minus
arm_3R 9259770..9259994 17..241 100   Minus

BO17839.pep Sequence

Translation from 16 to 2950

> BO17839.pep
MLRFLSRRKVRNNYVDNSREGGGATSSAVGVAGGGGAITSGGSSQIKPQR
IVVNKNKIDCRVILLDNTDLSIELSKKALGSFLYEQVFYALDIIEKDYFG
LQFMDANHVKHWLDPTKPIKKQVKIGPPYTFRLKVKFYSSEPNTLREELT
RYLFFLQLKQDLLEGRLDCPEDKATELCALALQSELGDYDNQEHSAATVS
EFRFVPEQTEDLEIAILDEYKTCRGLTPAQAETAFLNKAKWLDMYGVDMH
TVLGKDGCEYHLGLTPTGILVFERDQKIGLFFWPKISKLDFKKKKLTLIV
IEDDDEGREQEHTFVFRLYNEKACKHLWKCAVEHHTFFRLRAPVKGPSAR
QNFFRMGSRFRYSGRTEFQTTQQSRARRTVQFERRPSQRFASRQSHLLRE
RQKASQEAAVSAVASVNARAAAAAAAAAASQSPAPATPLVSSQVSTPTPN
NDNNNDAFDSLISTDQFITVTPSPSVLTVIQNSAIIEPDAACSGSISSSS
QAAANFASLGRNSLKSNFSNEDPAYSKIGSIGKASGLTVKLDPDYTPPYS
PNATKNFDETNPFRNATSSHHGSFGKASISSGQLSVKSGLSDKDRELDSL
LKSIVKDPSPSVLANEAINDANSIRVTINKTFDMDHNTETLKRLSNANEK
PNNQVKLANVNTTALPPGNIKCNILKARVEEELGAGGNAKLTNQMFVPAA
HSSNMHTSNTNSSNNHAHSDGPDSLNATYISVGGDKLTLSIPEQKPSTGS
SSSSSTSSTATTTTNGNGPYSNATFVSGFSAPLTPPSSLPANLNNTGSGC
NTTLTSVTTISTPSSPTATVSTTASESVAPALSNASAAEILINEIFINNI
INNNASGSITAETAAKPAGSSTPSAGTLLFSTLSEQERLESQKTNQQMNQ
SLNLNQNHSEVDAPPSEKKTPSNYPDSSRIPFPSSSNSKDMVSPWLVSSE
VVSAPKGRESAIIRKSVITTQLASFLDH

BO17839.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
yrt-PA 972 CG9764-PA 1..972 1..972 4955 100 Plus
yrt-PB 932 CG9764-PB 1..932 1..972 4713 95.9 Plus
yrt-PD 919 CG9764-PD 1..918 1..918 4685 100 Plus
yrt-PC 786 CG9764-PC 1..752 1..755 3768 97.7 Plus
CG34347-PE 1512 CG34347-PE 6..341 47..389 681 41.3 Plus
yrt-PC 786 CG9764-PC 414..786 677..972 301 32.2 Plus