Clone Sequence Records
BO17843.3prime Sequence
653 bp (606 high quality bases) assembled on 2006-10-13
> BO17843.3prime
ATGGTCTAGAAAGCTTGCAACGGAGAAGCCATCGCCGGTGGGATCCAGGA
TCCAGGGGTAGTTGTTGGGGCACTCCATGCACGTGAAGAGACGCAGCGTC
TCGCCGGGCAGCTCCCTGGTGGTCAGGGGACACGCGTTGGGCAGAGAGCA
GTAGGGCTGGCCCTTGACGTCGCACTTCTCCTTCCACTCCTGGAAGTCGC
GCAGCGAGTTCAGCTCGGTGGGGTTCTGCATCCACTGGATCACCTGCAGG
TTGGTCACGAAGAACACGTCGTTGCGGCCGAGCATCTCCTCGATGAATTT
GATCAGCTCGTCGCGGTACTCCTTCTTCGACTTCAGCCACGAAGCGTGGA
AGTGGAGTCCAAGTGGAGCACGGTTGCTATTGTAGTGGCGGTTGAAGTTG
TGGCGCAGCAGGCGTGCGAACTGGTCGCCGCTGGCTACGTTTGAGCAGGA
GTCCACCATATGGCAACCGGGCAGGGACTCGTCGAAGGTGGGATCGTCGC
GCCGGTCCAGCTCGTTCATGACCATCTCCCACACGGGGTGGCTCCTCGAT
GGGCAGTTGTGCGCGTTGCCGTTGCACTTGTGCGGCATGCGGAAGTACAG
GGTGTATGGCCAAATGGGCACGCGGCCAAGGGAGGCGGTGATGGAGGCGT
CGT
BO17843.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8756-PB | 1650 | LCBP1-RB | 1013..1647 | 653..19 | 3175 | 100 | Minus |
CG8756-PA | 1713 | LCBP1-RA | 1076..1710 | 653..19 | 3175 | 100 | Minus |
CG8756-PC | 1596 | LCBP1-RC | 959..1593 | 653..19 | 3175 | 100 | Minus |
CG8756-PD | 1578 | LCBP1-RD | 941..1575 | 653..19 | 3175 | 100 | Minus |
CG32209-PB | 1626 | CG32209-RB | 1106..1152 | 536..490 | 160 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
verm-RG | 2165 | CG8756-RG | 1055..1689 | 653..19 | 3175 | 100 | Minus |
verm-RI | 2255 | CG8756-RI | 1145..1779 | 653..19 | 3175 | 100 | Minus |
verm-RH | 2183 | CG8756-RH | 1073..1707 | 653..19 | 3175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19690509..19691143 | 19..653 | 3175 | 100 | Plus |
3L | 28110227 | 3L | 19701556..19701947 | 224..612 | 455 | 75 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:40:14 has no hits.
BO17843.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:08 Download gff for
BO17843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8756-PD | 941..1578 | 15..653 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:42:06 Download gff for
BO17843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
verm-RF | 1185..1823 | 14..653 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:47 Download gff for
BO17843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
verm-RH | 1073..1711 | 14..653 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:47 Download gff for
BO17843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19690505..19691143 | 14..653 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:42:06 Download gff for
BO17843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19683605..19684243 | 14..653 | 99 | | Plus |
BO17843.5prime Sequence
691 bp (623 high quality bases) assembled on 2006-10-13
> BO17843.5prime
GAAGTTATCAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGT
GCCTCTGCCTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGAT
GTGGAGGAGGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGA
GACCGACGGCGACTGCCGCGAGGTGTACAGATGTACCAAGTCGGGTTTGA
AAGAAATTCAGTGTCCTTCGGGTCTGGCCTTCGACGTGATCAAGCAGACC
TGCGACTGGAAGGCCAAGGTGACCAATTGCGACGAGAAAGAGAAGCCGCG
CAAGGCCAAGCCCATCCTGAAGACGGATGAGCCCATCTGTCCCGAGGGTA
AGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAAGGAGCTCTTCTGCAAC
GGCAAGTCCGACTGCAAGGACGAATCCGATGAGAACGCCTGCTCTGTCGA
TGAGGATCCCAACCGCGCCCCCGAATGCGATCCGACGCAGTGCGCCCTGC
CCGACTGCTTCTGCTCGGCGGACGGAACCCGCATTCCCGGCGGCATTGAG
CCCCAACAGGTGCCCCAGATGATCACGATCACCTTCAACGGCGCCGTCAA
CGTGGACAACATCGACCTGTACGAGGACATCTTCAACGGACAGCGCCAGA
ATCCCAACGGCTGCTCCATCAAGGGCACCTTCTTCGTGTCC
BO17843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8756-PD | 1578 | LCBP1-RD | 1..675 | 17..691 | 3375 | 100 | Plus |
CG8756-PB | 1650 | LCBP1-RB | 125..747 | 69..691 | 3115 | 100 | Plus |
CG8756-PA | 1713 | LCBP1-RA | 300..810 | 181..691 | 2555 | 100 | Plus |
CG8756-PC | 1596 | LCBP1-RC | 292..693 | 290..691 | 2010 | 100 | Plus |
CG8756-PA | 1713 | LCBP1-RA | 1..164 | 17..180 | 820 | 100 | Plus |
CG8756-PC | 1596 | LCBP1-RC | 1..164 | 17..180 | 820 | 100 | Plus |
CG8756-PB | 1650 | LCBP1-RB | 1..52 | 17..68 | 260 | 100 | Plus |
CG32209-PB | 1626 | CG32209-RB | 685..722 | 653..690 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
verm-RG | 2165 | CG8756-RG | 114..789 | 16..691 | 3380 | 100 | Plus |
verm-RI | 2255 | CG8756-RI | 478..879 | 290..691 | 2010 | 100 | Plus |
verm-RH | 2183 | CG8756-RH | 406..807 | 290..691 | 2010 | 100 | Plus |
verm-RI | 2255 | CG8756-RI | 239..350 | 69..180 | 560 | 100 | Plus |
verm-RI | 2255 | CG8756-RI | 114..166 | 16..68 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19691409..19691656 | 691..444 | 1240 | 100 | Minus |
3L | 28110227 | 3L | 19691809..19691958 | 443..294 | 750 | 100 | Minus |
3L | 28110227 | 3L | 19692265..19692379 | 293..179 | 575 | 100 | Minus |
3L | 28110227 | 3L | 19692983..19693095 | 180..68 | 565 | 100 | Minus |
3L | 28110227 | 3L | 19694973..19695025 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:04:21 has no hits.
BO17843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:09 Download gff for
BO17843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8756-PD | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:23 Download gff for
BO17843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
verm-RG | 112..792 | 12..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:28 Download gff for
BO17843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
verm-RG | 109..789 | 12..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:28 Download gff for
BO17843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19691409..19691656 | 444..691 | 100 | <- | Minus |
3L | 19691809..19691958 | 294..443 | 100 | <- | Minus |
3L | 19692265..19692377 | 181..293 | 100 | <- | Minus |
3L | 19692983..19693094 | 69..180 | 100 | <- | Minus |
3L | 19694973..19695030 | 12..68 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:23 Download gff for
BO17843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19684509..19684756 | 444..691 | 100 | <- | Minus |
arm_3L | 19684909..19685058 | 294..443 | 100 | <- | Minus |
arm_3L | 19685365..19685477 | 181..293 | 100 | <- | Minus |
arm_3L | 19686083..19686194 | 69..180 | 100 | <- | Minus |
arm_3L | 19688073..19688130 | 12..68 | 96 | | Minus |
BO17843.complete Sequence
1609 bp assembled on 2007-03-23
GenBank Submission: FJ634236
> BO17843.complete
GAAGTTATCAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGT
GCCTCTGCCTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGAT
GTGGAGGAGGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGA
GACCGACGGCGACTGCCGCGAGGTGTACAGATGTACCAAGTCGGGTTTGA
AAGAAATTCAGTGTCCTTCGGGTCTGGCCTTCGACGTGATCAAGCAGACC
TGCGACTGGAAGGCCAAGGTGACCAATTGCGACGAGAAAGAGAAGCCGCG
CAAGGCCAAGCCCATCCTGAAGACGGATGAGCCCATCTGTCCCGAGGGTA
AGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAAGGAGCTCTTCTGCAAC
GGCAAGTCCGACTGCAAGGACGAATCCGATGAGAACGCCTGCTCTGTCGA
TGAGGATCCCAACCGCGCCCCCGAATGCGATCCGACGCAGTGCGCCCTGC
CCGACTGCTTCTGCTCGGCGGACGGAACCCGCATTCCCGGCGGCATTGAG
CCCCAACAGGTGCCCCAGATGATCACGATCACCTTCAACGGCGCCGTCAA
CGTGGACAACATCGACCTGTACGAGGACATCTTCAACGGACAGCGCCAGA
ATCCCAACGGCTGCTCCATCAAGGGCACCTTCTTCGTGTCCCACAAGTAC
ACCAACTACTCGGCGGTGCAGGACCTTCATCGTCGCGGACACGAGATCTC
CGTGTTCTCGCTAACGCACAAGGATGACCCCAACTACTGGACCGGCGGCA
GCTACGACGACTGGCTGGCCGAGATGGCCGGCTCCCGACTGATCGTGGAG
CGCTTCGCCAACATCACCGACGGCTCCATCATCGGCATGCGGGCGCCCTA
CCTCCGCGTGGGCGGCAACAAGCAGTTCGAGATGATGGCCGATCAGTTCT
TCGTGTACGACGCCTCCATCACCGCCTCCCTTGGCCGCGTGCCCATTTGG
CCATACACCCTGTACTTCCGCATGCCGCACAAGTGCAACGGCAACGCGCA
CAACTGCCCATCGAGGAGCCACCCCGTGTGGGAGATGGTCATGAACGAGC
TGGACCGGCGCGACGATCCCACCTTCGACGAGTCCCTGCCCGGTTGCCAT
ATGGTGGACTCCTGCTCAAACGTAGCCAGCGGCGACCAGTTCGCACGCCT
GCTGCGCCACAACTTCAACCGCCACTACAATAGCAACCGTGCTCCACTTG
GACTCCACTTCCACGCTTCGTGGCTGAAGTCGAAGAAGGAGTACCGCGAC
GAGCTGATCAAATTCATCGAGGAGATGCTCGGCCGCAACGACGTGTTCTT
CGTGACCAACCTGCAGGTGATCCAGTGGATGCAGAACCCCACCGAGCTGA
ACTCGCTGCGCGACTTCCAGGAGTGGAAGGAGAAGTGCGACGTCAAGGGC
CAGCCCTACTGCTCTCTGCCCAACGCGTGTCCCCTGACCACCAGGGAGCT
GCCCGGCGAGACGCTGCGTCTCTTCACGTGCATGGAGTGCCCCAACAACT
ACCCCTGGATCCTGGATCCCACCGGCGATGGCTTCTCCGTTGCAAGCTTT
CTAGACCAT
BO17843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
verm-RG | 1578 | CG8756-PG | 1..1575 | 17..1591 | 7875 | 100 | Plus |
verm-RI | 1668 | CG8756-PI | 364..1665 | 290..1591 | 6510 | 100 | Plus |
verm-RH | 1596 | CG8756-PH | 292..1593 | 290..1591 | 6510 | 100 | Plus |
verm-RI | 1668 | CG8756-PI | 125..236 | 69..180 | 560 | 100 | Plus |
verm-RI | 1668 | CG8756-PI | 1..52 | 17..68 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
verm-RG | 2165 | CG8756-RG | 114..1689 | 16..1591 | 7880 | 100 | Plus |
verm-RI | 2255 | CG8756-RI | 478..1779 | 290..1591 | 6510 | 100 | Plus |
verm-RH | 2183 | CG8756-RH | 406..1707 | 290..1591 | 6510 | 100 | Plus |
verm-RI | 2255 | CG8756-RI | 239..350 | 69..180 | 560 | 100 | Plus |
verm-RI | 2255 | CG8756-RI | 114..166 | 16..68 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19690509..19691656 | 1591..444 | 5740 | 100 | Minus |
3L | 28110227 | 3L | 19701556..19702487 | 1386..455 | 915 | 73.7 | Minus |
3L | 28110227 | 3L | 19691809..19691958 | 443..294 | 750 | 100 | Minus |
3L | 28110227 | 3L | 19692265..19692379 | 293..179 | 575 | 100 | Minus |
3L | 28110227 | 3L | 19692983..19693095 | 180..68 | 565 | 100 | Minus |
3L | 28110227 | 3L | 19694973..19695025 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:59:12 has no hits.
BO17843.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:03 Download gff for
BO17843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LCBP1-RD | 1..1578 | 17..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:25 Download gff for
BO17843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LCBP1-RD | 74..1657 | 12..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:37 Download gff for
BO17843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
verm-RG | 118..1692 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:03 Download gff for
BO17843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LCBP1-RD | 74..1657 | 12..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:20 Download gff for
BO17843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
verm-RG | 115..1689 | 17..1593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:20 Download gff for
BO17843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19690507..19691656 | 444..1593 | 99 | <- | Minus |
3L | 19691809..19691958 | 294..443 | 100 | <- | Minus |
3L | 19692265..19692377 | 181..293 | 100 | <- | Minus |
3L | 19692983..19693094 | 69..180 | 100 | <- | Minus |
3L | 19694973..19695024 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:37 Download gff for
BO17843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19683607..19684756 | 444..1593 | 99 | <- | Minus |
arm_3L | 19684909..19685058 | 294..443 | 100 | <- | Minus |
arm_3L | 19685365..19685477 | 181..293 | 100 | <- | Minus |
arm_3L | 19686083..19686194 | 69..180 | 100 | <- | Minus |
arm_3L | 19688073..19688124 | 17..68 | 100 | | Minus |
BO17843.pep Sequence
Translation from 16 to 1609
> BO17843.pep
MARWWPILSVVCLCLAVAHGQDKLEGVDVEEVCADRPADEYFRLETDGDC
REVYRCTKSGLKEIQCPSGLAFDVIKQTCDWKAKVTNCDEKEKPRKAKPI
LKTDEPICPEGKLSCGDGECLDKELFCNGKSDCKDESDENACSVDEDPNR
APECDPTQCALPDCFCSADGTRIPGGIEPQQVPQMITITFNGAVNVDNID
LYEDIFNGQRQNPNGCSIKGTFFVSHKYTNYSAVQDLHRRGHEISVFSLT
HKDDPNYWTGGSYDDWLAEMAGSRLIVERFANITDGSIIGMRAPYLRVGG
NKQFEMMADQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSR
SHPVWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARLLRHNF
NRHYNSNRAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVFFVTNLQ
VIQWMQNPTELNSLRDFQEWKEKCDVKGQPYCSLPNACPLTTRELPGETL
RLFTCMECPNNYPWILDPTGDGFSVASFLDH
BO17843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
verm-PG | 525 | CG8756-PG | 1..525 | 1..525 | 2922 | 100 | Plus |
verm-PH | 531 | CG8756-PH | 1..531 | 1..525 | 2819 | 95.7 | Plus |
verm-PI | 555 | CG8756-PI | 1..555 | 1..525 | 2779 | 91.4 | Plus |
serp-PC | 541 | CG32209-PC | 45..540 | 30..523 | 1803 | 61.6 | Plus |
serp-PB | 541 | CG32209-PB | 45..540 | 30..523 | 1803 | 61.6 | Plus |