Clone BO17843 Report

Search the DGRC for BO17843

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptverm-RD
Protein status:BO17843.pep: validated full length
Sequenced Size:1609

Clone Sequence Records

BO17843.3prime Sequence

653 bp (606 high quality bases) assembled on 2006-10-13

> BO17843.3prime
ATGGTCTAGAAAGCTTGCAACGGAGAAGCCATCGCCGGTGGGATCCAGGA
TCCAGGGGTAGTTGTTGGGGCACTCCATGCACGTGAAGAGACGCAGCGTC
TCGCCGGGCAGCTCCCTGGTGGTCAGGGGACACGCGTTGGGCAGAGAGCA
GTAGGGCTGGCCCTTGACGTCGCACTTCTCCTTCCACTCCTGGAAGTCGC
GCAGCGAGTTCAGCTCGGTGGGGTTCTGCATCCACTGGATCACCTGCAGG
TTGGTCACGAAGAACACGTCGTTGCGGCCGAGCATCTCCTCGATGAATTT
GATCAGCTCGTCGCGGTACTCCTTCTTCGACTTCAGCCACGAAGCGTGGA
AGTGGAGTCCAAGTGGAGCACGGTTGCTATTGTAGTGGCGGTTGAAGTTG
TGGCGCAGCAGGCGTGCGAACTGGTCGCCGCTGGCTACGTTTGAGCAGGA
GTCCACCATATGGCAACCGGGCAGGGACTCGTCGAAGGTGGGATCGTCGC
GCCGGTCCAGCTCGTTCATGACCATCTCCCACACGGGGTGGCTCCTCGAT
GGGCAGTTGTGCGCGTTGCCGTTGCACTTGTGCGGCATGCGGAAGTACAG
GGTGTATGGCCAAATGGGCACGCGGCCAAGGGAGGCGGTGATGGAGGCGT
CGT

BO17843.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8756-PB 1650 LCBP1-RB 1013..1647 653..19 3175 100 Minus
CG8756-PA 1713 LCBP1-RA 1076..1710 653..19 3175 100 Minus
CG8756-PC 1596 LCBP1-RC 959..1593 653..19 3175 100 Minus
CG8756-PD 1578 LCBP1-RD 941..1575 653..19 3175 100 Minus
CG32209-PB 1626 CG32209-RB 1106..1152 536..490 160 93.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
verm-RG 2165 CG8756-RG 1055..1689 653..19 3175 100 Minus
verm-RI 2255 CG8756-RI 1145..1779 653..19 3175 100 Minus
verm-RH 2183 CG8756-RH 1073..1707 653..19 3175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19690509..19691143 19..653 3175 100 Plus
3L 28110227 3L 19701556..19701947 224..612 455 75 Plus
Blast to na_te.dros performed on 2015-02-13 00:40:14 has no hits.

BO17843.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:08 Download gff for BO17843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8756-PD 941..1578 15..653 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:42:06 Download gff for BO17843.3prime
Subject Subject Range Query Range Percent Splice Strand
verm-RF 1185..1823 14..653 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:47 Download gff for BO17843.3prime
Subject Subject Range Query Range Percent Splice Strand
verm-RH 1073..1711 14..653 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:47 Download gff for BO17843.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19690505..19691143 14..653 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:42:06 Download gff for BO17843.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19683605..19684243 14..653 99   Plus

BO17843.5prime Sequence

691 bp (623 high quality bases) assembled on 2006-10-13

> BO17843.5prime
GAAGTTATCAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGT
GCCTCTGCCTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGAT
GTGGAGGAGGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGA
GACCGACGGCGACTGCCGCGAGGTGTACAGATGTACCAAGTCGGGTTTGA
AAGAAATTCAGTGTCCTTCGGGTCTGGCCTTCGACGTGATCAAGCAGACC
TGCGACTGGAAGGCCAAGGTGACCAATTGCGACGAGAAAGAGAAGCCGCG
CAAGGCCAAGCCCATCCTGAAGACGGATGAGCCCATCTGTCCCGAGGGTA
AGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAAGGAGCTCTTCTGCAAC
GGCAAGTCCGACTGCAAGGACGAATCCGATGAGAACGCCTGCTCTGTCGA
TGAGGATCCCAACCGCGCCCCCGAATGCGATCCGACGCAGTGCGCCCTGC
CCGACTGCTTCTGCTCGGCGGACGGAACCCGCATTCCCGGCGGCATTGAG
CCCCAACAGGTGCCCCAGATGATCACGATCACCTTCAACGGCGCCGTCAA
CGTGGACAACATCGACCTGTACGAGGACATCTTCAACGGACAGCGCCAGA
ATCCCAACGGCTGCTCCATCAAGGGCACCTTCTTCGTGTCC

BO17843.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8756-PD 1578 LCBP1-RD 1..675 17..691 3375 100 Plus
CG8756-PB 1650 LCBP1-RB 125..747 69..691 3115 100 Plus
CG8756-PA 1713 LCBP1-RA 300..810 181..691 2555 100 Plus
CG8756-PC 1596 LCBP1-RC 292..693 290..691 2010 100 Plus
CG8756-PA 1713 LCBP1-RA 1..164 17..180 820 100 Plus
CG8756-PC 1596 LCBP1-RC 1..164 17..180 820 100 Plus
CG8756-PB 1650 LCBP1-RB 1..52 17..68 260 100 Plus
CG32209-PB 1626 CG32209-RB 685..722 653..690 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
verm-RG 2165 CG8756-RG 114..789 16..691 3380 100 Plus
verm-RI 2255 CG8756-RI 478..879 290..691 2010 100 Plus
verm-RH 2183 CG8756-RH 406..807 290..691 2010 100 Plus
verm-RI 2255 CG8756-RI 239..350 69..180 560 100 Plus
verm-RI 2255 CG8756-RI 114..166 16..68 265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19691409..19691656 691..444 1240 100 Minus
3L 28110227 3L 19691809..19691958 443..294 750 100 Minus
3L 28110227 3L 19692265..19692379 293..179 575 100 Minus
3L 28110227 3L 19692983..19693095 180..68 565 100 Minus
3L 28110227 3L 19694973..19695025 68..16 265 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:04:21 has no hits.

BO17843.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:09 Download gff for BO17843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8756-PD 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:23 Download gff for BO17843.5prime
Subject Subject Range Query Range Percent Splice Strand
verm-RG 112..792 12..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:28 Download gff for BO17843.5prime
Subject Subject Range Query Range Percent Splice Strand
verm-RG 109..789 12..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:28 Download gff for BO17843.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19691409..19691656 444..691 100 <- Minus
3L 19691809..19691958 294..443 100 <- Minus
3L 19692265..19692377 181..293 100 <- Minus
3L 19692983..19693094 69..180 100 <- Minus
3L 19694973..19695030 12..68 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:23 Download gff for BO17843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19684509..19684756 444..691 100 <- Minus
arm_3L 19684909..19685058 294..443 100 <- Minus
arm_3L 19685365..19685477 181..293 100 <- Minus
arm_3L 19686083..19686194 69..180 100 <- Minus
arm_3L 19688073..19688130 12..68 96   Minus

BO17843.complete Sequence

1609 bp assembled on 2007-03-23

GenBank Submission: FJ634236

> BO17843.complete
GAAGTTATCAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGT
GCCTCTGCCTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGAT
GTGGAGGAGGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGA
GACCGACGGCGACTGCCGCGAGGTGTACAGATGTACCAAGTCGGGTTTGA
AAGAAATTCAGTGTCCTTCGGGTCTGGCCTTCGACGTGATCAAGCAGACC
TGCGACTGGAAGGCCAAGGTGACCAATTGCGACGAGAAAGAGAAGCCGCG
CAAGGCCAAGCCCATCCTGAAGACGGATGAGCCCATCTGTCCCGAGGGTA
AGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAAGGAGCTCTTCTGCAAC
GGCAAGTCCGACTGCAAGGACGAATCCGATGAGAACGCCTGCTCTGTCGA
TGAGGATCCCAACCGCGCCCCCGAATGCGATCCGACGCAGTGCGCCCTGC
CCGACTGCTTCTGCTCGGCGGACGGAACCCGCATTCCCGGCGGCATTGAG
CCCCAACAGGTGCCCCAGATGATCACGATCACCTTCAACGGCGCCGTCAA
CGTGGACAACATCGACCTGTACGAGGACATCTTCAACGGACAGCGCCAGA
ATCCCAACGGCTGCTCCATCAAGGGCACCTTCTTCGTGTCCCACAAGTAC
ACCAACTACTCGGCGGTGCAGGACCTTCATCGTCGCGGACACGAGATCTC
CGTGTTCTCGCTAACGCACAAGGATGACCCCAACTACTGGACCGGCGGCA
GCTACGACGACTGGCTGGCCGAGATGGCCGGCTCCCGACTGATCGTGGAG
CGCTTCGCCAACATCACCGACGGCTCCATCATCGGCATGCGGGCGCCCTA
CCTCCGCGTGGGCGGCAACAAGCAGTTCGAGATGATGGCCGATCAGTTCT
TCGTGTACGACGCCTCCATCACCGCCTCCCTTGGCCGCGTGCCCATTTGG
CCATACACCCTGTACTTCCGCATGCCGCACAAGTGCAACGGCAACGCGCA
CAACTGCCCATCGAGGAGCCACCCCGTGTGGGAGATGGTCATGAACGAGC
TGGACCGGCGCGACGATCCCACCTTCGACGAGTCCCTGCCCGGTTGCCAT
ATGGTGGACTCCTGCTCAAACGTAGCCAGCGGCGACCAGTTCGCACGCCT
GCTGCGCCACAACTTCAACCGCCACTACAATAGCAACCGTGCTCCACTTG
GACTCCACTTCCACGCTTCGTGGCTGAAGTCGAAGAAGGAGTACCGCGAC
GAGCTGATCAAATTCATCGAGGAGATGCTCGGCCGCAACGACGTGTTCTT
CGTGACCAACCTGCAGGTGATCCAGTGGATGCAGAACCCCACCGAGCTGA
ACTCGCTGCGCGACTTCCAGGAGTGGAAGGAGAAGTGCGACGTCAAGGGC
CAGCCCTACTGCTCTCTGCCCAACGCGTGTCCCCTGACCACCAGGGAGCT
GCCCGGCGAGACGCTGCGTCTCTTCACGTGCATGGAGTGCCCCAACAACT
ACCCCTGGATCCTGGATCCCACCGGCGATGGCTTCTCCGTTGCAAGCTTT
CTAGACCAT

BO17843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
verm-RG 1578 CG8756-PG 1..1575 17..1591 7875 100 Plus
verm-RI 1668 CG8756-PI 364..1665 290..1591 6510 100 Plus
verm-RH 1596 CG8756-PH 292..1593 290..1591 6510 100 Plus
verm-RI 1668 CG8756-PI 125..236 69..180 560 100 Plus
verm-RI 1668 CG8756-PI 1..52 17..68 260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
verm-RG 2165 CG8756-RG 114..1689 16..1591 7880 100 Plus
verm-RI 2255 CG8756-RI 478..1779 290..1591 6510 100 Plus
verm-RH 2183 CG8756-RH 406..1707 290..1591 6510 100 Plus
verm-RI 2255 CG8756-RI 239..350 69..180 560 100 Plus
verm-RI 2255 CG8756-RI 114..166 16..68 265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19690509..19691656 1591..444 5740 100 Minus
3L 28110227 3L 19701556..19702487 1386..455 915 73.7 Minus
3L 28110227 3L 19691809..19691958 443..294 750 100 Minus
3L 28110227 3L 19692265..19692379 293..179 575 100 Minus
3L 28110227 3L 19692983..19693095 180..68 565 100 Minus
3L 28110227 3L 19694973..19695025 68..16 265 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:59:12 has no hits.

BO17843.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:03 Download gff for BO17843.complete
Subject Subject Range Query Range Percent Splice Strand
LCBP1-RD 1..1578 17..1595 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:25 Download gff for BO17843.complete
Subject Subject Range Query Range Percent Splice Strand
LCBP1-RD 74..1657 12..1595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:37 Download gff for BO17843.complete
Subject Subject Range Query Range Percent Splice Strand
verm-RG 118..1692 17..1593 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:03 Download gff for BO17843.complete
Subject Subject Range Query Range Percent Splice Strand
LCBP1-RD 74..1657 12..1595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:20 Download gff for BO17843.complete
Subject Subject Range Query Range Percent Splice Strand
verm-RG 115..1689 17..1593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:20 Download gff for BO17843.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19690507..19691656 444..1593 99 <- Minus
3L 19691809..19691958 294..443 100 <- Minus
3L 19692265..19692377 181..293 100 <- Minus
3L 19692983..19693094 69..180 100 <- Minus
3L 19694973..19695024 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:37 Download gff for BO17843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19683607..19684756 444..1593 99 <- Minus
arm_3L 19684909..19685058 294..443 100 <- Minus
arm_3L 19685365..19685477 181..293 100 <- Minus
arm_3L 19686083..19686194 69..180 100 <- Minus
arm_3L 19688073..19688124 17..68 100   Minus

BO17843.pep Sequence

Translation from 16 to 1609

> BO17843.pep
MARWWPILSVVCLCLAVAHGQDKLEGVDVEEVCADRPADEYFRLETDGDC
REVYRCTKSGLKEIQCPSGLAFDVIKQTCDWKAKVTNCDEKEKPRKAKPI
LKTDEPICPEGKLSCGDGECLDKELFCNGKSDCKDESDENACSVDEDPNR
APECDPTQCALPDCFCSADGTRIPGGIEPQQVPQMITITFNGAVNVDNID
LYEDIFNGQRQNPNGCSIKGTFFVSHKYTNYSAVQDLHRRGHEISVFSLT
HKDDPNYWTGGSYDDWLAEMAGSRLIVERFANITDGSIIGMRAPYLRVGG
NKQFEMMADQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSR
SHPVWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARLLRHNF
NRHYNSNRAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVFFVTNLQ
VIQWMQNPTELNSLRDFQEWKEKCDVKGQPYCSLPNACPLTTRELPGETL
RLFTCMECPNNYPWILDPTGDGFSVASFLDH

BO17843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
verm-PG 525 CG8756-PG 1..525 1..525 2922 100 Plus
verm-PH 531 CG8756-PH 1..531 1..525 2819 95.7 Plus
verm-PI 555 CG8756-PI 1..555 1..525 2779 91.4 Plus
serp-PC 541 CG32209-PC 45..540 30..523 1803 61.6 Plus
serp-PB 541 CG32209-PB 45..540 30..523 1803 61.6 Plus