Clone Sequence Records
BO17844.3prime Sequence
698 bp (567 high quality bases) assembled on 2006-10-13
> BO17844.3prime
ATGGTCTAGAAAGCTTGCAATGCCACAAGTTCGGTGATGTGTGTCCCAAT
CGCTCAGCTGGCATTCACGACTGCAGTACCATTGATTCTGACAGTTGGAG
CACATAAAGGTGGCTCCATAGAGCTTGCACTCGTGGCATTGTCTACCTGT
GTTACCGTTGATGGTGGCGGAAGATTCAGCCTGGGACTTATGGGAGCTCC
TATGCTTGTGAGACTTGTGCTTATGCGACTTGCGCTTGTGAGACTTGTGC
CTCTTTTGGACATTCTCATGGTCGTTGATATTAGCGGAATGTTGTTCTTG
GTAGGACTGTCTATTGGCCAGTTGGCGACGGGAGGCCATCGGACTGCTGT
TGAACAGCGGTTCGATCTGTGATTCATTATCCGAATTATTGTCCTCCATT
GAGACGTTACTAAAATGCGAATAATTTTTCCAAGCCCTAATCTTGCGAAG
CGTCTCTGAAAGATTGGCTGACAAATGTGTCGAGGAGCTTGCCATGTCCT
GGTTACTGTCTTGCGAGTGGATTAGCTTCGGTCGCTTGGCTGGCGGATCT
CTGTCTGGATTGCTATCTAGCAGATGGTCATTTACCGCATTCCGAGATTC
GTAATGCTGATCCCGCATTGATAGATGACTTACGGGCAAGGAATCTCTAC
GAAAAAGCATTTGGCCATCCTCGAAATTGGCGGGAGACACGGACGGTG
BO17844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4877-PB | 3354 | CG4877-RB | 2672..3351 | 698..19 | 3350 | 99.7 | Minus |
| CG4877-PA | 3354 | CG4877-RA | 2672..3351 | 698..19 | 3350 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 4076 | CG4877-RC | 2921..3600 | 698..19 | 3370 | 99.7 | Minus |
| RAF2-RA | 4082 | CG4877-RA | 2927..3606 | 698..19 | 3370 | 99.7 | Minus |
| RAF2-RB | 4006 | CG4877-RB | 2851..3530 | 698..19 | 3370 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16389933..16390184 | 309..58 | 1260 | 100 | Minus |
| 3L | 28110227 | 3L | 16389677..16389877 | 507..307 | 1005 | 100 | Minus |
| 3L | 28110227 | 3L | 16389428..16389620 | 698..506 | 935 | 99 | Minus |
| 3L | 28110227 | 3L | 16390300..16390340 | 59..19 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:01:29 has no hits.
BO17844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:10 Download gff for
BO17844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4877-PA | 2672..3354 | 15..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:38:40 Download gff for
BO17844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 2851..3533 | 15..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:53 Download gff for
BO17844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 2851..3533 | 15..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:53 Download gff for
BO17844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16389679..16389877 | 307..505 | 100 | -> | Minus |
| 3L | 16389936..16390184 | 58..306 | 100 | -> | Minus |
| 3L | 16390302..16390343 | 15..57 | 95 | | Minus |
| 3L | 16389428..16389620 | 506..698 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:38:40 Download gff for
BO17844.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16382528..16382720 | 506..698 | 98 | -> | Minus |
| arm_3L | 16382779..16382977 | 307..505 | 100 | -> | Minus |
| arm_3L | 16383036..16383284 | 58..306 | 100 | -> | Minus |
| arm_3L | 16383402..16383443 | 15..57 | 95 | | Minus |
BO17844.5prime Sequence
715 bp (631 high quality bases) assembled on 2006-10-13
> BO17844.5prime
GAAGTTATCAGTCGACATGTCCAACGAGATCTACGACTCCTCCAATTCGC
AGCTAAGTAGCGACGAGTATAGCCACGAGGAGGAGGAATACGACGCTCTA
ATGGACGCGGCGGTGAGCAAGCAACGACCCCAAAAGACAAAATCCAAGGG
ATCCGAGTCCGAGAAACCCGGAAATGGAGCTCCAGAATCGGCGGCTGCCA
CTGAGAAAAATGAAAAGCCAGATGACGATGCGGTGCCACCTTCCACGCGC
TCAGAAACAATTCGGCGGATCCGGCAATTGCAGTTACAGCGTGGCAGGCT
GCCCAATCTTTACTTCAAGCGTCGCAGTATTCGTTGGCTGCGACCCAATA
AAATGGACTACAACAGCTATTTTGACGGCCTGAAGGACTTGCTGCCCAAG
CGTAAATTGAAGCACCTGGTTCGCTTCCATGACAGGCAGCGCAGAACCTA
CGACAGCAGGAGCATCAGTCGTAGTCGCAGCCACAGCCGCAGTCTTAGCC
GAAGTTGCAGTCGCAGTCGTAGTCGTAGCTATTCTCGCAGCCGCAGCGGC
AGTGGTTCGCCGGAACTCATTTGCCTTGACGACACGGAGAACGAGGATTC
GCCTGAGAAACCAGAGCAAGAGCCGGCAAGGGTTACGCCCATCAAGGAAA
ATAAGCCTACGCTTCCGGCTCCACCCCAACTAAACTACGAGCTGCCAGAA
AGGAAGAAAGCAAAC
BO17844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4877-PB | 3354 | CG4877-RB | 1..699 | 17..715 | 3495 | 100 | Plus |
| CG4877-PA | 3354 | CG4877-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 4076 | CG4877-RC | 250..948 | 17..715 | 3495 | 100 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 256..954 | 17..715 | 3495 | 100 | Plus |
| RAF2-RB | 4006 | CG4877-RB | 180..878 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16387020..16387399 | 336..715 | 1900 | 100 | Plus |
| 3L | 28110227 | 3L | 16386637..16386957 | 17..337 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:04:52 has no hits.
BO17844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:11 Download gff for
BO17844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4877-PA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:26 Download gff for
BO17844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 180..878 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:16 Download gff for
BO17844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 180..878 | 17..715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:16 Download gff for
BO17844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16386637..16386956 | 17..336 | 100 | -> | Plus |
| 3L | 16387021..16387399 | 337..715 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:26 Download gff for
BO17844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16379737..16380056 | 17..336 | 100 | -> | Plus |
| arm_3L | 16380121..16380499 | 337..715 | 100 | | Plus |
BO17844.complete Sequence
3385 bp assembled on 2010-10-15
GenBank Submission: KX798102
> BO17844.complete
GAAGTTATCAGTCGACATGTCCAACGAGATCTACGACTCCTCCAATTCGC
AGCTAAGTAGCGACGAGTATAGCCACGAGGAGGAGGAATACGACGCTCTA
ATGGACGCGGCGGTGAGCAAGCAACGACCCCAAAAGACAAAATCCAAGGG
ATCCGAGTCCGAGAAACCCGGAAATGGAGCTCCAGAATCGGCGGCTGCCA
CTGAGAAAAATGAAAAGCCAGATGACGATGCGGTGCCACCTTCCACGCGC
TCAGAAACAATTCGGCGGATCCGGCAATTGCAGTTACAGCGTGGCAGGCT
GCCCAATCTTTACTTCAAGCGTCGCAGTATTCGTTGGCTGCGACCCAATA
AAATGGACTACAACAGCTATTTTGACGGCCTGAAGGACTTGCTGCCCAAG
CGTAAATTGAAGCACCTGGTTCGCTTCCATGACAGGCAGCGCAGAACCTA
CGACAGCAGGAGCATCAGTCGTAGTCGCAGCCACAGCCGCAGTCTTAGCC
GAAGTTGCAGTCGCAGTCGTAGTCGTAGCTATTCTCGCAGCCGCAGCGGC
AGTGGTTCGCCGGAACTCATTTGCCTTGACGACACGGAGAACGAGGATTC
GCCTGAGAAACCAGAGCAAGAGCCGGCAAGGGTTACGCCCATCAAGGAAA
ATAAGCCTACGCTTCCGGCTCCACCCCAACTAAACTACGAGCTGCCAGAA
AGGAAGAAAGCAAACCCACTTGGAAACAACGAAAACGGTGCCTCTATCCT
CGACGAGTTCCTGGTAAAGAAGGATCCCCAGGAACCGGTCTTCGACTACG
GTAAACTCTCAGCGTGTCGGGAATTGGAACAGGCTCTAAAGGACCGGTCG
CGAGATGCGCCAAATGAGGCAGAGTCGCTTGTGGTTGATGCCACTCTTAA
AAGACGCCGTTCGGTAACACCGCCCGCTAGCGAAGAGAAGCGCAACAATG
AAGTCGAGGATGATAATATAATTGGGTTTTCAACGGTGCAGCAACAGAAG
CCAATGGAGGCAGCTCCACCATTAAATCTAAGAATGCCCACCACTCCATC
GACTAATCCTCTTCAGCGTCAGCAGGCTTTTAAGCTGAGCACACCGTATA
CCCTGGCTCCGCCTACTGCCGCCAAGCAAGCTGACACTTACAGTTTAAAT
ACTCCACCGCCAACGGCCACCCAAATGCAGATATCCTATCCCAACGAAAA
GCTGTCAAATAACATGAAAGCTAATGCGACTTTCTCGATTCAACAGACAG
CTTTATCCCAAGTCGCTGCATCCTATGCTGCTGCACCACAAGTGGCTGCC
CTCGCGCAGAGAGCTCCATCTCAGGTTGCTCCACTACAACAAGCCCCCGT
GCAACAGATGCACTTCCCAAGATCAGTTCCACCGCAGCAGCTTCCTCCAC
CACAGCAGCGAGCTCCTCCACAGCAACTGGCTACAGCTCCATTCGCTCCA
CCACGGCACCTGGCTCAACATAGACCATCTCCACAGCAGCTAGCTCCATC
ACAGCAGCTGGCTCCACCACACCAGCTAGCTCCACCACACCAGCTAGCTC
CACCACAGCAGCGAGCTCCGCCACAGCAGCTAGCTCCACCACACCAGCTA
GCTCCACCACACCAGCTAGCTCCACCACAGCAGCGAGCTCCGCCACAGCA
GCTAGCTCCGCCACAGCAGCTAGCTCCACCACAGCAGCTAGCTCCACCAC
AGCAGCTAGCTCCACCACAGCAGCTAGCTCCACCACAGCAGCGAGCTCCG
CCACAGCAGCGAGCTCCGCCACAGCAGCTGGCTCCGCCACAACAGCGAGC
TCCCACACAGCATATGGCTCCACCACAACATATGGCTCCGCCACAGCAGC
TAGCTCCAACACAGCAGCTAGCTCCTCCACCACAGCAGCTAGCGCCTCGA
CCACAGCAGCTAGCTCCTCCACCACAGCAACTAGCTCCTCCACCACAGCA
GCTAGCTCCTCCACCACAGCAGCCAGATTCATCAAGACCAGCTTCGGTGC
AGCCGTTGACCCCTCAAAGGCATGCTAGTCCACATCAGCTTGCCCAATCA
CAGCAGGTCCATCAATCGCCATCTCAACTGCATCCTGTTCCAGTGGCTGC
TCCCAACTTTGCGGTGCCCCAACAGCCGCAACCCCGTCGATCGGAAACGG
TGAGCACCCAGACGCAGGGCTTGGGGTCACCAGCGGCTTCTTCTTCGACA
ACCCGCCAAAAGTCATTCGTTGATCTCAATAATAGTGATGCAAACTTCCA
TTATCGCGTCAAAGAACTTTTCGATGAATTGAACTCGACAATGATTGATA
AAATTAACTCGGTACCCCCTGATGAAGATTCATTGAAAAAAGAGCGCGAA
CGCATCGTTGCGGATCTTGCAGCCCTAGATAAGCTGATGGCCCAGAAAGA
GGATGAATATAACCGACTGCTGTATTTGAGCTGCATTAAGAAGGAGCTGC
ATGAACGAATGGAGCGAAAGGAGCGCTTGATACGTATTAAGGACCTACTG
CCCATCCTTATCAACAAGTGCGGCACCAAGGAGCTCAGTGAGGTAAAGGC
TATGCTAGAAGAGGAAATCGATTCTCCAATGGCCTCCAAACATAGTTTGT
CGGCAATTGAAAAATTACTGAATTACGCCGAGTTAAACCAGAACATCATA
CAGCTTCTGCGGGGTTCCTTGGGCTTAAATAAACGCGCACCGTCCGTGTC
TCCGGCCAATTTCGAGGATGACCAAATGCTTTTTCGTAGAGATTCCTTGC
CCGTAAGTCATCTATCAATGCGGGATCAGCATTACGAATCTCGGAATGCG
GTAAATGACCATCTGCTAGATAGCAATCCAGACAGAGATCCGCCAGCCAA
GCGACCGAAGCTAATCCACTCGCAAGACAGTAACCAGGACATGGCAAGCT
CCTCGACACATTTGTCAGCCAATCTTTCAGAGACGCTTCGCAAGATTAGG
GCTTGGAAAAATTATTCGCATTTTAGTAACGTCTCAATGGAGGACAATAA
TTCGGATAATGAATCACAGATCGAACCGCTGTTCAACAGCAGTCCGATGG
CCTCCCGTCGCCAACTGGCCAATAGACAGTCCTACCAAGAACAACATTCC
GCTAATATCAACGACCATGAGAATGTCCAAAAGAGGCACAAGTCTCACAA
GCGCAAGTCGCATAAGCACAAGTCTCACAAGCATAGGAGCTCCCATAAGT
CCCAGGCTGAATCTTCCGCCACCATCAACGGTAACACAGGTAGACAATGC
CACGAGTGCAAGCTCTATGGAGCCACCTTTATGTGCTCCAACTGTCAGAA
TCAATGGTACTGCAGTCGTGAATGCCAGCTGAGCGATTGGGACACACATC
ACCGAACTTGTGGCATTGCAAGCTTTCTAGACCAT
BO17844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 3354 | CG4877-PC | 1..3351 | 17..3367 | 16755 | 100 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1..3351 | 17..3367 | 16755 | 100 | Plus |
| RAF2-RB | 3354 | CG4877-PB | 1..3351 | 17..3367 | 16755 | 100 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1913 | 1517..1971 | 1335 | 87.3 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1913 | 1517..1971 | 1335 | 87.3 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1519..1955 | 1481..1929 | 1230 | 85.8 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1519..1955 | 1481..1929 | 1230 | 85.8 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1894 | 1553..1973 | 1105 | 84.8 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1894 | 1553..1973 | 1105 | 84.8 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1780 | 1571..1886 | 1070 | 89.2 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1780 | 1571..1886 | 1070 | 89.2 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1756 | 1589..1880 | 965 | 88.7 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1756 | 1589..1880 | 965 | 88.7 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1738 | 1607..1880 | 920 | 89.1 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1738 | 1607..1880 | 920 | 89.1 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1720 | 1625..1880 | 815 | 87.9 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1720 | 1625..1880 | 815 | 87.9 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1720 | 1661..1922 | 775 | 88.2 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1738 | 1643..1922 | 775 | 86.8 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1738 | 1643..1922 | 775 | 86.8 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1720 | 1661..1922 | 775 | 88.2 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1738 | 1679..1964 | 705 | 86.4 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1738 | 1679..1964 | 705 | 86.4 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1720 | 1697..1964 | 570 | 84.3 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1720 | 1697..1964 | 570 | 84.3 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1702 | 1715..1964 | 495 | 83.6 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1702 | 1715..1964 | 495 | 83.6 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1684 | 1733..1964 | 360 | 81 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1666 | 1751..1964 | 360 | 82.2 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1684 | 1733..1964 | 360 | 81 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1666 | 1751..1964 | 360 | 82.2 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1648 | 1769..1964 | 255 | 80.1 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1465..1630 | 1787..1964 | 255 | 81.5 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1648 | 1769..1964 | 255 | 80.1 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1465..1630 | 1787..1964 | 255 | 81.5 | Plus |
| RAF2-RC | 3354 | CG4877-PC | 1466..1612 | 1806..1964 | 205 | 81.1 | Plus |
| RAF2-RA | 3354 | CG4877-PA | 1466..1612 | 1806..1964 | 205 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 4076 | CG4877-RC | 250..3600 | 17..3367 | 16755 | 100 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 256..3606 | 17..3367 | 16755 | 100 | Plus |
| RAF2-RB | 4006 | CG4877-RB | 180..3530 | 17..3367 | 16755 | 100 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..2162 | 1517..1971 | 1335 | 87.3 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..2168 | 1517..1971 | 1335 | 87.3 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1768..2204 | 1481..1929 | 1230 | 85.8 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1774..2210 | 1481..1929 | 1230 | 85.8 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..2143 | 1553..1973 | 1105 | 84.8 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..2149 | 1553..1973 | 1105 | 84.8 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..2029 | 1571..1886 | 1070 | 89.2 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..2035 | 1571..1886 | 1070 | 89.2 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..2005 | 1589..1880 | 965 | 88.7 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..2011 | 1589..1880 | 965 | 88.7 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1987 | 1607..1880 | 920 | 89.1 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1993 | 1607..1880 | 920 | 89.1 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1969 | 1625..1880 | 815 | 87.9 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1975 | 1625..1880 | 815 | 87.9 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1987 | 1643..1922 | 775 | 86.8 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1969 | 1661..1922 | 775 | 88.2 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1975 | 1661..1922 | 775 | 88.2 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1993 | 1643..1922 | 775 | 86.8 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1987 | 1679..1964 | 705 | 86.4 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1993 | 1679..1964 | 705 | 86.4 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1969 | 1697..1964 | 570 | 84.3 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1975 | 1697..1964 | 570 | 84.3 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1951 | 1715..1964 | 495 | 83.6 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1957 | 1715..1964 | 495 | 83.6 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1933 | 1733..1964 | 360 | 81 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1915 | 1751..1964 | 360 | 82.2 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1939 | 1733..1964 | 360 | 81 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1921 | 1751..1964 | 360 | 82.2 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1897 | 1769..1964 | 255 | 80.1 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1714..1879 | 1787..1964 | 255 | 81.5 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1903 | 1769..1964 | 255 | 80.1 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1720..1885 | 1787..1964 | 255 | 81.5 | Plus |
| RAF2-RC | 4076 | CG4877-RC | 1715..1861 | 1806..1964 | 205 | 81.1 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 1721..1867 | 1806..1964 | 205 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16387020..16389348 | 336..2664 | 11645 | 100 | Plus |
| 3L | 28110227 | 3L | 16386637..16386957 | 17..337 | 1605 | 100 | Plus |
| 3L | 28110227 | 3L | 16388165..16388613 | 1517..1971 | 1335 | 87.3 | Plus |
| 3L | 28110227 | 3L | 16389933..16390184 | 3077..3328 | 1260 | 100 | Plus |
| 3L | 28110227 | 3L | 16388219..16388655 | 1481..1929 | 1230 | 85.8 | Plus |
| 3L | 28110227 | 3L | 16388165..16388594 | 1553..1973 | 1105 | 84.8 | Plus |
| 3L | 28110227 | 3L | 16389404..16389620 | 2664..2880 | 1085 | 100 | Plus |
| 3L | 28110227 | 3L | 16388165..16388480 | 1571..1886 | 1070 | 89.2 | Plus |
| 3L | 28110227 | 3L | 16389677..16389877 | 2879..3079 | 1005 | 100 | Plus |
| 3L | 28110227 | 3L | 16388165..16388456 | 1589..1880 | 965 | 88.7 | Plus |
| 3L | 28110227 | 3L | 16388165..16388438 | 1607..1880 | 920 | 89.1 | Plus |
| 3L | 28110227 | 3L | 16388165..16388420 | 1625..1880 | 815 | 87.9 | Plus |
| 3L | 28110227 | 3L | 16388165..16388438 | 1643..1922 | 775 | 86.8 | Plus |
| 3L | 28110227 | 3L | 16388165..16388420 | 1661..1922 | 775 | 88.2 | Plus |
| 3L | 28110227 | 3L | 16388165..16388438 | 1679..1964 | 705 | 86.4 | Plus |
| 3L | 28110227 | 3L | 16388165..16388420 | 1697..1964 | 570 | 84.3 | Plus |
| 3L | 28110227 | 3L | 16388165..16388402 | 1715..1964 | 495 | 83.6 | Plus |
| 3L | 28110227 | 3L | 16388165..16388384 | 1733..1964 | 360 | 81 | Plus |
| 3L | 28110227 | 3L | 16388165..16388366 | 1751..1964 | 360 | 82.2 | Plus |
| 3L | 28110227 | 3L | 16388165..16388348 | 1769..1964 | 255 | 80.1 | Plus |
| 3L | 28110227 | 3L | 16388165..16388330 | 1787..1964 | 255 | 81.5 | Plus |
| 3L | 28110227 | 3L | 16388166..16388312 | 1806..1964 | 205 | 81.1 | Plus |
| 3L | 28110227 | 3L | 16390300..16390340 | 3327..3367 | 205 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..7083 | 1574..1977 | 291 | 58.7 | Plus |
BO17844.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:22:59 Download gff for
BO17844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4877-RA | 238..3588 | 17..3369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:13 Download gff for
BO17844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 180..3530 | 17..3369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:55 Download gff for
BO17844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 180..3530 | 17..3369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:55 Download gff for
BO17844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16389936..16390184 | 3080..3328 | 100 | -> | Plus |
| 3L | 16390302..16390340 | 3329..3369 | 95 | | Plus |
| 3L | 16386637..16386956 | 17..336 | 100 | -> | Plus |
| 3L | 16387021..16389348 | 337..2664 | 100 | -> | Plus |
| 3L | 16389405..16389620 | 2665..2880 | 100 | -> | Plus |
| 3L | 16389679..16389877 | 2881..3079 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:13 Download gff for
BO17844.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16379737..16380056 | 17..336 | 100 | -> | Plus |
| arm_3L | 16380121..16382448 | 337..2664 | 100 | -> | Plus |
| arm_3L | 16382505..16382720 | 2665..2880 | 100 | -> | Plus |
| arm_3L | 16382779..16382977 | 2881..3079 | 100 | -> | Plus |
| arm_3L | 16383036..16383284 | 3080..3328 | 100 | -> | Plus |
| arm_3L | 16383402..16383440 | 3329..3369 | 95 | | Plus |
BO17844.pep Sequence
Translation from 16 to 3385
> BO17844.pep
MSNEIYDSSNSQLSSDEYSHEEEEYDALMDAAVSKQRPQKTKSKGSESEK
PGNGAPESAAATEKNEKPDDDAVPPSTRSETIRRIRQLQLQRGRLPNLYF
KRRSIRWLRPNKMDYNSYFDGLKDLLPKRKLKHLVRFHDRQRRTYDSRSI
SRSRSHSRSLSRSCSRSRSRSYSRSRSGSGSPELICLDDTENEDSPEKPE
QEPARVTPIKENKPTLPAPPQLNYELPERKKANPLGNNENGASILDEFLV
KKDPQEPVFDYGKLSACRELEQALKDRSRDAPNEAESLVVDATLKRRRSV
TPPASEEKRNNEVEDDNIIGFSTVQQQKPMEAAPPLNLRMPTTPSTNPLQ
RQQAFKLSTPYTLAPPTAAKQADTYSLNTPPPTATQMQISYPNEKLSNNM
KANATFSIQQTALSQVAASYAAAPQVAALAQRAPSQVAPLQQAPVQQMHF
PRSVPPQQLPPPQQRAPPQQLATAPFAPPRHLAQHRPSPQQLAPSQQLAP
PHQLAPPHQLAPPQQRAPPQQLAPPHQLAPPHQLAPPQQRAPPQQLAPPQ
QLAPPQQLAPPQQLAPPQQLAPPQQRAPPQQRAPPQQLAPPQQRAPTQHM
APPQHMAPPQQLAPTQQLAPPPQQLAPRPQQLAPPPQQLAPPPQQLAPPP
QQPDSSRPASVQPLTPQRHASPHQLAQSQQVHQSPSQLHPVPVAAPNFAV
PQQPQPRRSETVSTQTQGLGSPAASSSTTRQKSFVDLNNSDANFHYRVKE
LFDELNSTMIDKINSVPPDEDSLKKERERIVADLAALDKLMAQKEDEYNR
LLYLSCIKKELHERMERKERLIRIKDLLPILINKCGTKELSEVKAMLEEE
IDSPMASKHSLSAIEKLLNYAELNQNIIQLLRGSLGLNKRAPSVSPANFE
DDQMLFRRDSLPVSHLSMRDQHYESRNAVNDHLLDSNPDRDPPAKRPKLI
HSQDSNQDMASSSTHLSANLSETLRKIRAWKNYSHFSNVSMEDNNSDNES
QIEPLFNSSPMASRRQLANRQSYQEQHSANINDHENVQKRHKSHKRKSHK
HKSHKHRSSHKSQAESSATINGNTGRQCHECKLYGATFMCSNCQNQWYCS
RECQLSDWDTHHRTCGIASFLDH
BO17844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-PC | 1117 | CG4877-PC | 1..1117 | 1..1117 | 5855 | 100 | Plus |
| RAF2-PA | 1117 | CG4877-PA | 1..1117 | 1..1117 | 5855 | 100 | Plus |
| RAF2-PB | 1117 | CG4877-PB | 1..1117 | 1..1117 | 5855 | 100 | Plus |
| Wnk-PN | 2441 | CG7177-PN | 1027..1443 | 324..711 | 295 | 29.1 | Plus |
| Wnk-PL | 2441 | CG7177-PL | 1027..1443 | 324..711 | 295 | 29.1 | Plus |
| Wnk-PN | 2441 | CG7177-PN | 794..1370 | 244..717 | 258 | 27 | Plus |
