Clone Sequence Records
BO17847.3prime Sequence
854 bp (759 high quality bases) assembled on 2006-10-13
> BO17847.3prime
ATGGTCTAGAAAGCTTGCTGCCTGCAGACCCGCCCGGGTCCCAGATCCCG
AGCCTGTTCCAGTTCCGGCGCCCTCATTGCCGTTGCCCATTGCCTCGACG
TCGGTGTCGATGAAGAGCCGCATGAACTGTATGCATCGGCTGTGGTAGTC
CATCCAGGCGGCACGCTCGGTGCTTCGCAACAGAATGCGGCCAAAGGTGG
ATGCGACTTGATGCAGATCATAGAACTGACTCTCGATGCCCGCGCGCAGG
AACATACAAAGGTGCATGAAAACATTGCGCTTGGGGGGACTTAACAGCGA
AATGTAGTCCATAGCCTGCGACTTGTTGGTGCACTCCAGCAGATTCTCGA
CCACCGGCTCCAGCAGAGCATGCTCCGGCAGATCCAGCAAAAGCAGCAGC
GCCTGCGCAGCCGTCTCTGCGTTGGCAGGGAACGGATCATCCGACCAGGT
GTCCAACCAATCGCGCACCGAGTTAAATTGAGCGCCGAGGGAGAGACGCG
AGTCGTAGGACGGGAAGGCGCCCACCTGCTTGGAGCCCTGCCTGTACAGA
TAGTCGATCAGCAGAAAGAATTCCCGGGGCATCGTCACACGGTATTCCGG
TGATTCGTCATTCATGAGTTGCTTAATCTGATCTTGGGAATACTCGCTTA
ATGGACGGTCGGTGCGGCACATCGTCTCCATGGAAAGGCCAAAGCAACTG
GGCTGATAGTCGCCCGTAACCGTGATGAAGATGTCACGCCCGTTCTCCAC
GTGCAAGATGAGATTATCGAAGTTGTCGCTAGCACGGATCTTGCGAAACA
AGCCGGCAATGGTGCGCACATTGNCGTTCATTTTTCAGCCGATGCTTCGG
GCGG
BO17847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3573-PA | 2553 | CG3573-RA | 1715..2550 | 854..19 | 4011 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-RB | 3619 | CG3573-RB | 2423..3258 | 854..19 | 4079 | 99.3 | Minus |
Ocrl-RA | 3688 | CG3573-RA | 2492..3327 | 854..19 | 4079 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1926694..1926918 | 428..204 | 1125 | 100 | Minus |
X | 23542271 | X | 1926141..1926383 | 854..612 | 1054 | 95.5 | Minus |
X | 23542271 | X | 1926446..1926632 | 615..429 | 935 | 100 | Minus |
X | 23542271 | X | 1926978..1927163 | 204..19 | 930 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 07:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2567..2689 | 327..445 | 110 | 58.1 | Plus |
BO17847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:13 Download gff for
BO17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3573-PA | 1715..2553 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:32:37 Download gff for
BO17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 2492..3327 | 19..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:44 Download gff for
BO17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 2492..3327 | 19..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:44 Download gff for
BO17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1926141..1926379 | 616..854 | 97 | -> | Minus |
X | 1926446..1926632 | 429..615 | 100 | -> | Minus |
X | 1926694..1926918 | 204..428 | 100 | -> | Minus |
X | 1926979..1927163 | 19..203 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:32:37 Download gff for
BO17847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1820174..1820412 | 616..854 | 97 | -> | Minus |
arm_X | 1820479..1820665 | 429..615 | 100 | -> | Minus |
arm_X | 1820727..1820951 | 204..428 | 100 | -> | Minus |
arm_X | 1821012..1821196 | 19..203 | 100 | | Minus |
BO17847.5prime Sequence
761 bp (747 high quality bases) assembled on 2006-10-13
> BO17847.5prime
GAAGTTATCAGTCGACATGGACACGTTGAGCGAGGCAGTGGCCAATGGAA
CCGCGACTGCGGCCACCAGGACGACCAAGGACATTGTCAAGGAGCGCTTC
AAGGAGGACGAGACCATAGAATACATATTCGAGGCGTATCAGATCAAAGG
ACCAGAGTACTCCAACCGTCTTCTGGCCCTGGTTTCATCGCAGTCGGGCG
GCACGTTTGCCATCATCGCGTTCTCCTACTTGCGCACTCCATTGTCCTCC
GCGAACGAGCTGATCATCAACAAGGTGTTCGCAATCGACCACAATTTCCA
GTTGCGACAGGACAGCAAGAGCTCGATCACCACGCAACAGTTTGACCTGT
CCACAGCCGAGGATGGCCCCATCAAGTACTACTACTACGCCACGGAGAGC
CACCACTACGAGGAGTTTGTGGCCAAGGTGATTTCCTTCAAGAGCACCAT
GGCGCAGCATGATCCCGAGACGGTGCTTAACTTCAGGTGGCTGAATGACT
ACCGGCAAATCGGAGAAGTGAAGCAGGAGCTGAAGAAGCGGGAGAGCGAG
TACATTGTCTACAAGGACATAATCATCTACTGCGCCACTTGGAATGTGAA
CAACAAGACCTGCAGCGACAGCAACAATCCACTGCGAGCCTGGCTGGCTT
GCAGTGAGAAGCCGCCGGATATCTACGCGATTGGACTGCAGGAGCTAGAT
ACTCCCACAAAGGCTATGTTGAACTCCACCCAGGTGCAGGCCATCGAGAA
ACAATGGATCG
BO17847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3573-PA | 2553 | CG3573-RA | 1..745 | 17..761 | 3700 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-RB | 3619 | CG3573-RB | 709..1453 | 17..761 | 3710 | 99.9 | Plus |
Ocrl-RA | 3688 | CG3573-RA | 778..1522 | 17..761 | 3710 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1924527..1924789 | 311..573 | 1315 | 100 | Plus |
X | 23542271 | X | 1924095..1924285 | 121..311 | 940 | 99.5 | Plus |
X | 23542271 | X | 1924851..1925036 | 574..759 | 915 | 99.5 | Plus |
X | 23542271 | X | 1923758..1923865 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:32:46 has no hits.
BO17847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:14 Download gff for
BO17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3573-PA | 1..745 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:45:19 Download gff for
BO17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 772..1522 | 10..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:26 Download gff for
BO17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 772..1522 | 10..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:26 Download gff for
BO17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1923752..1923865 | 10..124 | 97 | -> | Plus |
X | 1924099..1924285 | 125..311 | 100 | -> | Plus |
X | 1924528..1924789 | 312..573 | 100 | -> | Plus |
X | 1924851..1925037 | 574..761 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:45:19 Download gff for
BO17847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1817785..1817898 | 10..124 | 97 | -> | Plus |
arm_X | 1818132..1818318 | 125..311 | 100 | -> | Plus |
arm_X | 1818561..1818822 | 312..573 | 100 | -> | Plus |
arm_X | 1818884..1819070 | 574..761 | 98 | | Plus |
BO17847.complete Sequence
2584 bp assembled on 2007-03-23
GenBank Submission: FJ634237
> BO17847.complete
GAAGTTATCAGTCGACATGGACACGTTGAGCGAGGCAGTGGCCAATGGAA
CCGCGACTGCGGCCACCAGGACGACCAAGGACATTGTCAAGGAGCGCTTC
AAGGAGGACGAGACCATAGAATACATATTCGAGGCGTATCAGATCAAAGG
ACCAGAGTACTCCAACCGTCTTCTGGCCCTGGTTTCATCGCAGTCGGGCG
GCACGTTTGCCATCATCGCGTTCTCCTACTTGCGCACTCCATTGTCCTCC
GCGAACGAGCTGATCATCAACAAGGTGTTCGCAATCGACCACAATTTCCA
GTTGCGACAGGACAGCAAGAGCTCGATCACCACGCAACAGTTTGACCTGT
CCACAGCCGAGGATGGCCCCATCAAGTACTACTACTACGCCACGGAGAGC
CACCACTACGAGGAGTTTGTGGCCAAGGTGATTTCCTTCAAGAGCACCAT
GGCGCAGCATGATCCCGAGACGGTGCTTAACTTCAGGTGGCTGAATGACT
ACCGGCAAATCGGAGAAGTGAAGCAGGAGCTGAAGAAGCGGGAGAGCGAG
TACATTGTCTACAAGGACATAATCATCTACTGCGCCACTTGGAATGTGAA
CAACAAGACCTGCAGCGACAGCAACAATCCACTGCGAGCCTGGCTGGCTT
GCAGTGAGAAGCCGCCGGATATCTACGCGATTGGACTGCAGGAGCTAGAT
ACTCCCACAAAGGCTATGTTGAACTCCACCCAGGTGCAGGCCATCGAGAA
GCAATGGATCGATAAGATGATGGACAGCGTCCACCCTGACGTAGAGTACG
AAATCCTGATGTCGCACCGCCTGGTGGCCACCATGCTGACGGTCATCGTG
CGCAAGCAGCTGCGGCAGCACATCATACGCTGCCGACCAAAGTCGGTGGC
CCGCGGCATCTTCAATACGCTAGGCAACAAGGGCGGTGTCGCCATTAGCC
TGCAGCTCAACGAGGGCAACATCTGCTTTGTGAACTCCCACCTGGCCGCC
CACATGGGCTACGTGGAGGAGCGGAATCAGGACTACAACGCTATCGTGGA
GGGCATACGCTTCGATGATGGCCGAACAATCAGTGACCATGATCACATCT
TCTGGGTCGGCGATTTGAATTACCGCATCCAGGAGCCGCCCGGCCAACAG
CGACCAGGACCACTGAGCGATGCCCAGACATACGAGCTGCTACTGCAGTA
CGACCAGCTACGTCAGGAGATGCGGCGTGGAAAGTGCTTTGAGGGCTACA
CCGAGGGCGAGATCAAGTTCCGGCCGACGTACAAGTATGATCCGGGCACG
GACAACTACGACAGCAGCGAGAAGCAGCGGGCGCCGGCCTACTGCGATCG
AGTGCTCTGGAAGGGCACGCGCATCGAGCAGCTGGCCTACAACAGCATCA
TGGAGATTCGGCAGAGCGATCACAAGCCCGTGTACGCCGTGTTCCAGGTC
AAGGTCAAGACTCGCGATGAGGTCAAGTACAAACGGGTGCAGGAGGAGGT
GCTGAAGGCAGTGGACAAGCGGGAGAACGACAACCAGCCACAGATCAATG
TCGAGAAGACGGTCATCGATTTCGGGACTGTGCGATTTAACGAGCCGAGC
ACACGGGACTTCAACGTCTATAACAACTGCCCACTACCTGTGGACTTCAG
TTTCAAAGAGAAGGATATACACGCCATCTGCGAGCCATGGCTGCACGTCG
ATCCGCGCCAAGACTCGCTGCTGATCGACTCCGCCCGAAGCATTCGGCTG
AAAATGAACGCCAATGTGCGCACCATTGCCGGCTTGCTTCGCAAGATCCG
TGCTAGCGACAACTTCGATATTCTCATCCTGCACGTGGAGAACGGGCGTG
ACATCTTCATCACGGTTACGGGCGACTATCAGCCCAGTTGCTTTGGCCTT
TCCATGGAGACGATGTGCCGCACCGACCGTCCATTAAGCGAGTATTCCCA
AGATCAGATTAAGCAACTCATGAATGACGAATCACCGGAATACCGTGTGA
CGATGCCCCGGGAATTCTTTCTGCTGATCGACTATCTGTACAGGCAGGGC
TCCAAGCAGGTGGGCGCCTTCCCGTCCTACGACTCGCGTCTCTCCCTCGG
CGCTCAATTTAACTCGGTGCGCGATTGGTTGGACACCTGGTCGGATGATC
CGTTCCCTGCCAACGCAGAGACGGCTGCGCAGGCGCTGCTGCTTTTGCTG
GATCTGCCGGAGCATGCTCTGCTGGAGCCGGTGGTCGAGAATCTGCTGGA
GTGCACCAACAAGTCGCAGGCTATGGACTACATTTCGCTGTTAAGTCCCC
CCAAGCGCAATGTTTTCATGCACCTTTGTATGTTCCTGCGCGCGGGCATC
GAGAGTCAGTTCTATGATCTGCATCAAGTCGCATCCACCTTTGGCCGCAT
TCTGTTGCGAAGCACCGAGCGTGCCGCCTGGATGGACTACCACAGCCGAT
GCATACAGTTCATGCGGCTCTTCATCGACACCGACGTCGAGGCAATGGGC
AACGGCAATGAGGGCGCCGGAACTGGAACAGGCTCGGGATCTGGGACCCG
GGCGGGTCTGCAGGCAGCAAGCTTTCTAGACCAT
BO17847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-RB | 2553 | CG3573-PB | 1..2550 | 17..2566 | 12750 | 100 | Plus |
Ocrl-RA | 2553 | CG3573-PA | 1..2550 | 17..2566 | 12750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-RB | 3619 | CG3573-RB | 709..3258 | 17..2566 | 12750 | 100 | Plus |
Ocrl-RA | 3688 | CG3573-RA | 778..3327 | 17..2566 | 12750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1925503..1926383 | 1093..1973 | 4390 | 99.9 | Plus |
X | 23542271 | X | 1925103..1925435 | 760..1092 | 1665 | 100 | Plus |
X | 23542271 | X | 1924527..1924789 | 311..573 | 1315 | 100 | Plus |
X | 23542271 | X | 1926694..1926918 | 2157..2381 | 1125 | 100 | Plus |
X | 23542271 | X | 1924095..1924285 | 121..311 | 940 | 99.5 | Plus |
X | 23542271 | X | 1926446..1926632 | 1970..2156 | 935 | 100 | Plus |
X | 23542271 | X | 1924851..1925036 | 574..759 | 930 | 100 | Plus |
X | 23542271 | X | 1926978..1927163 | 2381..2566 | 930 | 100 | Plus |
X | 23542271 | X | 1923758..1923865 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:21:43 has no hits.
BO17847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:05 Download gff for
BO17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3573-RA | 1..2553 | 17..2567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:31 Download gff for
BO17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3573-RA | 748..3303 | 10..2566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:53 Download gff for
BO17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 778..3327 | 17..2568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:05 Download gff for
BO17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3573-RA | 748..3303 | 10..2566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:01 Download gff for
BO17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ocrl-RA | 778..3327 | 17..2568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:01 Download gff for
BO17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1924528..1924789 | 312..573 | 100 | -> | Plus |
X | 1924851..1925036 | 574..759 | 100 | -> | Plus |
X | 1923758..1923865 | 17..124 | 100 | -> | Plus |
X | 1924099..1924285 | 125..311 | 100 | -> | Plus |
X | 1926979..1927163 | 2382..2568 | 98 | | Plus |
X | 1925103..1925435 | 760..1092 | 100 | -> | Plus |
X | 1925503..1926379 | 1093..1969 | 100 | -> | Plus |
X | 1926446..1926632 | 1970..2156 | 100 | -> | Plus |
X | 1926694..1926918 | 2157..2381 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:53 Download gff for
BO17847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1817791..1817898 | 17..124 | 100 | -> | Plus |
arm_X | 1818132..1818318 | 125..311 | 100 | -> | Plus |
arm_X | 1818561..1818822 | 312..573 | 100 | -> | Plus |
arm_X | 1818884..1819069 | 574..759 | 100 | -> | Plus |
arm_X | 1819136..1819468 | 760..1092 | 100 | -> | Plus |
arm_X | 1819536..1820412 | 1093..1969 | 100 | -> | Plus |
arm_X | 1820479..1820665 | 1970..2156 | 100 | -> | Plus |
arm_X | 1820727..1820951 | 2157..2381 | 100 | -> | Plus |
arm_X | 1821012..1821196 | 2382..2568 | 98 | | Plus |
BO17847.pep Sequence
Translation from 16 to 2584
> BO17847.pep
MDTLSEAVANGTATAATRTTKDIVKERFKEDETIEYIFEAYQIKGPEYSN
RLLALVSSQSGGTFAIIAFSYLRTPLSSANELIINKVFAIDHNFQLRQDS
KSSITTQQFDLSTAEDGPIKYYYYATESHHYEEFVAKVISFKSTMAQHDP
ETVLNFRWLNDYRQIGEVKQELKKRESEYIVYKDIIIYCATWNVNNKTCS
DSNNPLRAWLACSEKPPDIYAIGLQELDTPTKAMLNSTQVQAIEKQWIDK
MMDSVHPDVEYEILMSHRLVATMLTVIVRKQLRQHIIRCRPKSVARGIFN
TLGNKGGVAISLQLNEGNICFVNSHLAAHMGYVEERNQDYNAIVEGIRFD
DGRTISDHDHIFWVGDLNYRIQEPPGQQRPGPLSDAQTYELLLQYDQLRQ
EMRRGKCFEGYTEGEIKFRPTYKYDPGTDNYDSSEKQRAPAYCDRVLWKG
TRIEQLAYNSIMEIRQSDHKPVYAVFQVKVKTRDEVKYKRVQEEVLKAVD
KRENDNQPQINVEKTVIDFGTVRFNEPSTRDFNVYNNCPLPVDFSFKEKD
IHAICEPWLHVDPRQDSLLIDSARSIRLKMNANVRTIAGLLRKIRASDNF
DILILHVENGRDIFITVTGDYQPSCFGLSMETMCRTDRPLSEYSQDQIKQ
LMNDESPEYRVTMPREFFLLIDYLYRQGSKQVGAFPSYDSRLSLGAQFNS
VRDWLDTWSDDPFPANAETAAQALLLLLDLPEHALLEPVVENLLECTNKS
QAMDYISLLSPPKRNVFMHLCMFLRAGIESQFYDLHQVASTFGRILLRST
ERAAWMDYHSRCIQFMRLFIDTDVEAMGNGNEGAGTGTGSGSGTRAGLQA
ASFLDH
BO17847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ocrl-PB | 850 | CG3573-PB | 1..850 | 1..850 | 4460 | 100 | Plus |
Ocrl-PA | 850 | CG3573-PA | 1..850 | 1..850 | 4460 | 100 | Plus |
Synj-PC | 1218 | CG6562-PC | 521..882 | 168..497 | 487 | 33.4 | Plus |
Synj-PA | 1218 | CG6562-PA | 521..882 | 168..497 | 487 | 33.4 | Plus |
Synj-PB | 1218 | CG6562-PB | 521..882 | 168..497 | 487 | 33.4 | Plus |