Clone BO17847 Report

Search the DGRC for BO17847

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG3573-RA
Protein status:BO17847.pep: validated full length
Sequenced Size:2584

Clone Sequence Records

BO17847.3prime Sequence

854 bp (759 high quality bases) assembled on 2006-10-13

> BO17847.3prime
ATGGTCTAGAAAGCTTGCTGCCTGCAGACCCGCCCGGGTCCCAGATCCCG
AGCCTGTTCCAGTTCCGGCGCCCTCATTGCCGTTGCCCATTGCCTCGACG
TCGGTGTCGATGAAGAGCCGCATGAACTGTATGCATCGGCTGTGGTAGTC
CATCCAGGCGGCACGCTCGGTGCTTCGCAACAGAATGCGGCCAAAGGTGG
ATGCGACTTGATGCAGATCATAGAACTGACTCTCGATGCCCGCGCGCAGG
AACATACAAAGGTGCATGAAAACATTGCGCTTGGGGGGACTTAACAGCGA
AATGTAGTCCATAGCCTGCGACTTGTTGGTGCACTCCAGCAGATTCTCGA
CCACCGGCTCCAGCAGAGCATGCTCCGGCAGATCCAGCAAAAGCAGCAGC
GCCTGCGCAGCCGTCTCTGCGTTGGCAGGGAACGGATCATCCGACCAGGT
GTCCAACCAATCGCGCACCGAGTTAAATTGAGCGCCGAGGGAGAGACGCG
AGTCGTAGGACGGGAAGGCGCCCACCTGCTTGGAGCCCTGCCTGTACAGA
TAGTCGATCAGCAGAAAGAATTCCCGGGGCATCGTCACACGGTATTCCGG
TGATTCGTCATTCATGAGTTGCTTAATCTGATCTTGGGAATACTCGCTTA
ATGGACGGTCGGTGCGGCACATCGTCTCCATGGAAAGGCCAAAGCAACTG
GGCTGATAGTCGCCCGTAACCGTGATGAAGATGTCACGCCCGTTCTCCAC
GTGCAAGATGAGATTATCGAAGTTGTCGCTAGCACGGATCTTGCGAAACA
AGCCGGCAATGGTGCGCACATTGNCGTTCATTTTTCAGCCGATGCTTCGG
GCGG

BO17847.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3573-PA 2553 CG3573-RA 1715..2550 854..19 4011 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-RB 3619 CG3573-RB 2423..3258 854..19 4079 99.3 Minus
Ocrl-RA 3688 CG3573-RA 2492..3327 854..19 4079 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1926694..1926918 428..204 1125 100 Minus
X 23542271 X 1926141..1926383 854..612 1054 95.5 Minus
X 23542271 X 1926446..1926632 615..429 935 100 Minus
X 23542271 X 1926978..1927163 204..19 930 100 Minus
Blast to na_te.dros performed 2015-02-13 07:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2567..2689 327..445 110 58.1 Plus

BO17847.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:13 Download gff for BO17847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3573-PA 1715..2553 18..854 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:32:37 Download gff for BO17847.3prime
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 2492..3327 19..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:44 Download gff for BO17847.3prime
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 2492..3327 19..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:44 Download gff for BO17847.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1926141..1926379 616..854 97 -> Minus
X 1926446..1926632 429..615 100 -> Minus
X 1926694..1926918 204..428 100 -> Minus
X 1926979..1927163 19..203 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:32:37 Download gff for BO17847.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1820174..1820412 616..854 97 -> Minus
arm_X 1820479..1820665 429..615 100 -> Minus
arm_X 1820727..1820951 204..428 100 -> Minus
arm_X 1821012..1821196 19..203 100   Minus

BO17847.5prime Sequence

761 bp (747 high quality bases) assembled on 2006-10-13

> BO17847.5prime
GAAGTTATCAGTCGACATGGACACGTTGAGCGAGGCAGTGGCCAATGGAA
CCGCGACTGCGGCCACCAGGACGACCAAGGACATTGTCAAGGAGCGCTTC
AAGGAGGACGAGACCATAGAATACATATTCGAGGCGTATCAGATCAAAGG
ACCAGAGTACTCCAACCGTCTTCTGGCCCTGGTTTCATCGCAGTCGGGCG
GCACGTTTGCCATCATCGCGTTCTCCTACTTGCGCACTCCATTGTCCTCC
GCGAACGAGCTGATCATCAACAAGGTGTTCGCAATCGACCACAATTTCCA
GTTGCGACAGGACAGCAAGAGCTCGATCACCACGCAACAGTTTGACCTGT
CCACAGCCGAGGATGGCCCCATCAAGTACTACTACTACGCCACGGAGAGC
CACCACTACGAGGAGTTTGTGGCCAAGGTGATTTCCTTCAAGAGCACCAT
GGCGCAGCATGATCCCGAGACGGTGCTTAACTTCAGGTGGCTGAATGACT
ACCGGCAAATCGGAGAAGTGAAGCAGGAGCTGAAGAAGCGGGAGAGCGAG
TACATTGTCTACAAGGACATAATCATCTACTGCGCCACTTGGAATGTGAA
CAACAAGACCTGCAGCGACAGCAACAATCCACTGCGAGCCTGGCTGGCTT
GCAGTGAGAAGCCGCCGGATATCTACGCGATTGGACTGCAGGAGCTAGAT
ACTCCCACAAAGGCTATGTTGAACTCCACCCAGGTGCAGGCCATCGAGAA
ACAATGGATCG

BO17847.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3573-PA 2553 CG3573-RA 1..745 17..761 3700 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-RB 3619 CG3573-RB 709..1453 17..761 3710 99.9 Plus
Ocrl-RA 3688 CG3573-RA 778..1522 17..761 3710 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1924527..1924789 311..573 1315 100 Plus
X 23542271 X 1924095..1924285 121..311 940 99.5 Plus
X 23542271 X 1924851..1925036 574..759 915 99.5 Plus
X 23542271 X 1923758..1923865 17..124 540 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:32:46 has no hits.

BO17847.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:14 Download gff for BO17847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3573-PA 1..745 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:45:19 Download gff for BO17847.5prime
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 772..1522 10..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:26 Download gff for BO17847.5prime
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 772..1522 10..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:26 Download gff for BO17847.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1923752..1923865 10..124 97 -> Plus
X 1924099..1924285 125..311 100 -> Plus
X 1924528..1924789 312..573 100 -> Plus
X 1924851..1925037 574..761 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:45:19 Download gff for BO17847.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1817785..1817898 10..124 97 -> Plus
arm_X 1818132..1818318 125..311 100 -> Plus
arm_X 1818561..1818822 312..573 100 -> Plus
arm_X 1818884..1819070 574..761 98   Plus

BO17847.complete Sequence

2584 bp assembled on 2007-03-23

GenBank Submission: FJ634237

> BO17847.complete
GAAGTTATCAGTCGACATGGACACGTTGAGCGAGGCAGTGGCCAATGGAA
CCGCGACTGCGGCCACCAGGACGACCAAGGACATTGTCAAGGAGCGCTTC
AAGGAGGACGAGACCATAGAATACATATTCGAGGCGTATCAGATCAAAGG
ACCAGAGTACTCCAACCGTCTTCTGGCCCTGGTTTCATCGCAGTCGGGCG
GCACGTTTGCCATCATCGCGTTCTCCTACTTGCGCACTCCATTGTCCTCC
GCGAACGAGCTGATCATCAACAAGGTGTTCGCAATCGACCACAATTTCCA
GTTGCGACAGGACAGCAAGAGCTCGATCACCACGCAACAGTTTGACCTGT
CCACAGCCGAGGATGGCCCCATCAAGTACTACTACTACGCCACGGAGAGC
CACCACTACGAGGAGTTTGTGGCCAAGGTGATTTCCTTCAAGAGCACCAT
GGCGCAGCATGATCCCGAGACGGTGCTTAACTTCAGGTGGCTGAATGACT
ACCGGCAAATCGGAGAAGTGAAGCAGGAGCTGAAGAAGCGGGAGAGCGAG
TACATTGTCTACAAGGACATAATCATCTACTGCGCCACTTGGAATGTGAA
CAACAAGACCTGCAGCGACAGCAACAATCCACTGCGAGCCTGGCTGGCTT
GCAGTGAGAAGCCGCCGGATATCTACGCGATTGGACTGCAGGAGCTAGAT
ACTCCCACAAAGGCTATGTTGAACTCCACCCAGGTGCAGGCCATCGAGAA
GCAATGGATCGATAAGATGATGGACAGCGTCCACCCTGACGTAGAGTACG
AAATCCTGATGTCGCACCGCCTGGTGGCCACCATGCTGACGGTCATCGTG
CGCAAGCAGCTGCGGCAGCACATCATACGCTGCCGACCAAAGTCGGTGGC
CCGCGGCATCTTCAATACGCTAGGCAACAAGGGCGGTGTCGCCATTAGCC
TGCAGCTCAACGAGGGCAACATCTGCTTTGTGAACTCCCACCTGGCCGCC
CACATGGGCTACGTGGAGGAGCGGAATCAGGACTACAACGCTATCGTGGA
GGGCATACGCTTCGATGATGGCCGAACAATCAGTGACCATGATCACATCT
TCTGGGTCGGCGATTTGAATTACCGCATCCAGGAGCCGCCCGGCCAACAG
CGACCAGGACCACTGAGCGATGCCCAGACATACGAGCTGCTACTGCAGTA
CGACCAGCTACGTCAGGAGATGCGGCGTGGAAAGTGCTTTGAGGGCTACA
CCGAGGGCGAGATCAAGTTCCGGCCGACGTACAAGTATGATCCGGGCACG
GACAACTACGACAGCAGCGAGAAGCAGCGGGCGCCGGCCTACTGCGATCG
AGTGCTCTGGAAGGGCACGCGCATCGAGCAGCTGGCCTACAACAGCATCA
TGGAGATTCGGCAGAGCGATCACAAGCCCGTGTACGCCGTGTTCCAGGTC
AAGGTCAAGACTCGCGATGAGGTCAAGTACAAACGGGTGCAGGAGGAGGT
GCTGAAGGCAGTGGACAAGCGGGAGAACGACAACCAGCCACAGATCAATG
TCGAGAAGACGGTCATCGATTTCGGGACTGTGCGATTTAACGAGCCGAGC
ACACGGGACTTCAACGTCTATAACAACTGCCCACTACCTGTGGACTTCAG
TTTCAAAGAGAAGGATATACACGCCATCTGCGAGCCATGGCTGCACGTCG
ATCCGCGCCAAGACTCGCTGCTGATCGACTCCGCCCGAAGCATTCGGCTG
AAAATGAACGCCAATGTGCGCACCATTGCCGGCTTGCTTCGCAAGATCCG
TGCTAGCGACAACTTCGATATTCTCATCCTGCACGTGGAGAACGGGCGTG
ACATCTTCATCACGGTTACGGGCGACTATCAGCCCAGTTGCTTTGGCCTT
TCCATGGAGACGATGTGCCGCACCGACCGTCCATTAAGCGAGTATTCCCA
AGATCAGATTAAGCAACTCATGAATGACGAATCACCGGAATACCGTGTGA
CGATGCCCCGGGAATTCTTTCTGCTGATCGACTATCTGTACAGGCAGGGC
TCCAAGCAGGTGGGCGCCTTCCCGTCCTACGACTCGCGTCTCTCCCTCGG
CGCTCAATTTAACTCGGTGCGCGATTGGTTGGACACCTGGTCGGATGATC
CGTTCCCTGCCAACGCAGAGACGGCTGCGCAGGCGCTGCTGCTTTTGCTG
GATCTGCCGGAGCATGCTCTGCTGGAGCCGGTGGTCGAGAATCTGCTGGA
GTGCACCAACAAGTCGCAGGCTATGGACTACATTTCGCTGTTAAGTCCCC
CCAAGCGCAATGTTTTCATGCACCTTTGTATGTTCCTGCGCGCGGGCATC
GAGAGTCAGTTCTATGATCTGCATCAAGTCGCATCCACCTTTGGCCGCAT
TCTGTTGCGAAGCACCGAGCGTGCCGCCTGGATGGACTACCACAGCCGAT
GCATACAGTTCATGCGGCTCTTCATCGACACCGACGTCGAGGCAATGGGC
AACGGCAATGAGGGCGCCGGAACTGGAACAGGCTCGGGATCTGGGACCCG
GGCGGGTCTGCAGGCAGCAAGCTTTCTAGACCAT

BO17847.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-RB 2553 CG3573-PB 1..2550 17..2566 12750 100 Plus
Ocrl-RA 2553 CG3573-PA 1..2550 17..2566 12750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-RB 3619 CG3573-RB 709..3258 17..2566 12750 100 Plus
Ocrl-RA 3688 CG3573-RA 778..3327 17..2566 12750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1925503..1926383 1093..1973 4390 99.9 Plus
X 23542271 X 1925103..1925435 760..1092 1665 100 Plus
X 23542271 X 1924527..1924789 311..573 1315 100 Plus
X 23542271 X 1926694..1926918 2157..2381 1125 100 Plus
X 23542271 X 1924095..1924285 121..311 940 99.5 Plus
X 23542271 X 1926446..1926632 1970..2156 935 100 Plus
X 23542271 X 1924851..1925036 574..759 930 100 Plus
X 23542271 X 1926978..1927163 2381..2566 930 100 Plus
X 23542271 X 1923758..1923865 17..124 540 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:21:43 has no hits.

BO17847.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:05 Download gff for BO17847.complete
Subject Subject Range Query Range Percent Splice Strand
CG3573-RA 1..2553 17..2567 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:31 Download gff for BO17847.complete
Subject Subject Range Query Range Percent Splice Strand
CG3573-RA 748..3303 10..2566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:53 Download gff for BO17847.complete
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 778..3327 17..2568 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:05 Download gff for BO17847.complete
Subject Subject Range Query Range Percent Splice Strand
CG3573-RA 748..3303 10..2566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:01 Download gff for BO17847.complete
Subject Subject Range Query Range Percent Splice Strand
Ocrl-RA 778..3327 17..2568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:01 Download gff for BO17847.complete
Subject Subject Range Query Range Percent Splice Strand
X 1924528..1924789 312..573 100 -> Plus
X 1924851..1925036 574..759 100 -> Plus
X 1923758..1923865 17..124 100 -> Plus
X 1924099..1924285 125..311 100 -> Plus
X 1926979..1927163 2382..2568 98   Plus
X 1925103..1925435 760..1092 100 -> Plus
X 1925503..1926379 1093..1969 100 -> Plus
X 1926446..1926632 1970..2156 100 -> Plus
X 1926694..1926918 2157..2381 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:53 Download gff for BO17847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1817791..1817898 17..124 100 -> Plus
arm_X 1818132..1818318 125..311 100 -> Plus
arm_X 1818561..1818822 312..573 100 -> Plus
arm_X 1818884..1819069 574..759 100 -> Plus
arm_X 1819136..1819468 760..1092 100 -> Plus
arm_X 1819536..1820412 1093..1969 100 -> Plus
arm_X 1820479..1820665 1970..2156 100 -> Plus
arm_X 1820727..1820951 2157..2381 100 -> Plus
arm_X 1821012..1821196 2382..2568 98   Plus

BO17847.pep Sequence

Translation from 16 to 2584

> BO17847.pep
MDTLSEAVANGTATAATRTTKDIVKERFKEDETIEYIFEAYQIKGPEYSN
RLLALVSSQSGGTFAIIAFSYLRTPLSSANELIINKVFAIDHNFQLRQDS
KSSITTQQFDLSTAEDGPIKYYYYATESHHYEEFVAKVISFKSTMAQHDP
ETVLNFRWLNDYRQIGEVKQELKKRESEYIVYKDIIIYCATWNVNNKTCS
DSNNPLRAWLACSEKPPDIYAIGLQELDTPTKAMLNSTQVQAIEKQWIDK
MMDSVHPDVEYEILMSHRLVATMLTVIVRKQLRQHIIRCRPKSVARGIFN
TLGNKGGVAISLQLNEGNICFVNSHLAAHMGYVEERNQDYNAIVEGIRFD
DGRTISDHDHIFWVGDLNYRIQEPPGQQRPGPLSDAQTYELLLQYDQLRQ
EMRRGKCFEGYTEGEIKFRPTYKYDPGTDNYDSSEKQRAPAYCDRVLWKG
TRIEQLAYNSIMEIRQSDHKPVYAVFQVKVKTRDEVKYKRVQEEVLKAVD
KRENDNQPQINVEKTVIDFGTVRFNEPSTRDFNVYNNCPLPVDFSFKEKD
IHAICEPWLHVDPRQDSLLIDSARSIRLKMNANVRTIAGLLRKIRASDNF
DILILHVENGRDIFITVTGDYQPSCFGLSMETMCRTDRPLSEYSQDQIKQ
LMNDESPEYRVTMPREFFLLIDYLYRQGSKQVGAFPSYDSRLSLGAQFNS
VRDWLDTWSDDPFPANAETAAQALLLLLDLPEHALLEPVVENLLECTNKS
QAMDYISLLSPPKRNVFMHLCMFLRAGIESQFYDLHQVASTFGRILLRST
ERAAWMDYHSRCIQFMRLFIDTDVEAMGNGNEGAGTGTGSGSGTRAGLQA
ASFLDH

BO17847.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ocrl-PB 850 CG3573-PB 1..850 1..850 4460 100 Plus
Ocrl-PA 850 CG3573-PA 1..850 1..850 4460 100 Plus
Synj-PC 1218 CG6562-PC 521..882 168..497 487 33.4 Plus
Synj-PA 1218 CG6562-PA 521..882 168..497 487 33.4 Plus
Synj-PB 1218 CG6562-PB 521..882 168..497 487 33.4 Plus