Clone BO17854 Report

Search the DGRC for BO17854

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptRassf-RA
Protein status:BO17854.pep: validated full length
Sequenced Size:2452

Clone Sequence Records

BO17854.3prime Sequence

776 bp (748 high quality bases) assembled on 2006-10-13

> BO17854.3prime
ATGGTCTAGAAAGCTTGCCAAATGCACTTTCAGAGATTCCATGCGACTGA
CAATACGACGTCGCAATTCGGCGTATCTTTCCTTTATTTTGGCCACTTCG
CGGGCCAGTTCCTGGTCGTAGCGCTCCAGAATAGCACGGCACTCGGGCAA
AGATAAATTCAAAAATTGAGCAACTTCATTACTGATTTCATCAGTTTTGC
GAGAATCCACTAAAAATATACGAGCCACATCCTCATGAGGTCCCAAAGTG
ACGCGCGTTATCAAAGGATATTCGTCGTCCTTGAGACGTTTCTGTTCACC
ATTGTCGCGAACAATGAAGAGTGAAAAATTGCCAGGCGAACTGTCCACCT
TGTATTTCTCCAGCACCAAGTTGATAACCTCAGTGGTGGTCACCATCGAG
GAGACCCACACTGACATTTGAGAACCGTAGGGCGGCGTGAAAAACGACGT
CTCCCGATTGTAGTAGTGACCATTGATAGAGCACCGACGTTTCAGCTTGG
TACGAGAACGACGATTGCCACTTCGTCGCTTGATGGCAGAAGCTCCTGTG
CGTGGAGGTCTTCTCAGCACAACTCCATCTTCCGTCACATGCAACCCAGC
CGATCCATCTCCGTCTGGACCATCAACGCCCTCGCTTGCAGTGTACAAAT
CCTCGGTTTGCGTAAGCTCATCGCCGGCCGCTGCACCACTGGTTATGGAT
GGAGCATCTGCCCGACTTGACTCACCTTCGCTAGCAGCAGCCACATTCTC
TTTGGGATAACAGTCCATCTGGATTT

BO17854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4656-PA 2421 CG4656-RA 1661..2418 776..19 3790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rassf-RA 3473 CG4656-RA 2054..2811 776..19 3790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23114964..23115291 182..509 1640 100 Plus
3R 32079331 3R 23115352..23115619 509..776 1340 100 Plus
3R 32079331 3R 23114799..23114906 77..184 540 100 Plus
3R 32079331 3R 23114676..23114735 19..78 300 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:03:30 has no hits.

BO17854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:17 Download gff for BO17854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4656-PA 1661..2421 15..776 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:34:29 Download gff for BO17854.3prime
Subject Subject Range Query Range Percent Splice Strand
Rassf-RA 2054..2814 15..776 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:52 Download gff for BO17854.3prime
Subject Subject Range Query Range Percent Splice Strand
Rassf-RA 2054..2814 15..776 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:52 Download gff for BO17854.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23115352..23115619 509..776 100   Plus
3R 23114964..23115290 182..508 100 <- Plus
3R 23114672..23114733 15..76 96 <- Plus
3R 23114799..23114903 77..181 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:29 Download gff for BO17854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18940394..18940455 15..76 96 <- Plus
arm_3R 18940521..18940625 77..181 100 <- Plus
arm_3R 18940686..18941012 182..508 100 <- Plus
arm_3R 18941074..18941341 509..776 100   Plus

BO17854.5prime Sequence

748 bp (675 high quality bases) assembled on 2006-10-13

> BO17854.5prime
GAAGTTATCAGTCGACATGTGGAAGTGCCACAAGTGCGGCAAACCCGTTT
ACTTCGCGGAACGTAAACAATCGATCGGCTACGATTGGCATCCGGAATGT
TTGCGCTGCGAGGAATGCGGCAAACGCTTAAATCCCGGCCAGCATGCTGA
GCACAAAAGTGTGCCCTACTGCCATGTGCCCTGCTATGGCGCCCTGTTTG
GACCCCAGTTGTTTGGCCACGGCACCCGGGTGGAATCGCACAAAAGCTAT
GGGGTGAAGGGAGCCCAGAAGCCAACCGGAGCTCAGGCCAATGGCCCGCC
ACTCCCACGTGATCACCTGGAGTCCAAACTTAAGGTCTACAACCAATTCT
ACGACAACAAAAGCCTGGAGATACGTAGTCGTGAGGTCAACAACCGGTTG
GTGCTGGAAGGCGCGCTTAGAGTTTACTGGGGCGTGCAGGGAGTGATTCA
TCTCAAGGAGGACGATGATCAGCGCATCTTAGTGCGCAAAAGGAACTCTT
GCCGTGTGTCCAAGGCTGCCAATGAAAGCAGTTCGGATAAGGAAAACGAA
GCTAGCGAATCGCTGGCTCCGCCCACCACCACCACAGCCGAGGTCGATCA
ACTATCCACGGATGTTTCCCTTTCCGAGAGCATGACCTTCGACTCCTGTA
GCCTGAACGAGATCTCCGAGTTGCCCACAACCCCAGAAGATGCCTCGGCC
AACACCACAGCCCACAGCAAAGAGCAGACCAATGGTAATGTGTGCAAC

BO17854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4656-PA 2421 CG4656-RA 1..732 17..748 3635 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rassf-RA 3473 CG4656-RA 394..1125 17..748 3645 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23116548..23116772 748..524 1110 99.6 Minus
3R 32079331 3R 23116820..23117016 529..333 970 99.5 Minus
3R 32079331 3R 23117079..23117265 336..150 935 100 Minus
3R 32079331 3R 23117330..23117425 151..56 480 100 Minus
3R 32079331 3R 23117499..23117538 56..17 200 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:32:55 has no hits.

BO17854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:18 Download gff for BO17854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4656-PA 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:45:21 Download gff for BO17854.5prime
Subject Subject Range Query Range Percent Splice Strand
Rassf-RA 390..1125 9..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:06 Download gff for BO17854.5prime
Subject Subject Range Query Range Percent Splice Strand
Rassf-RA 390..1125 9..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:06 Download gff for BO17854.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23116826..23117014 335..523 100 <- Minus
3R 23117081..23117263 152..334 100 <- Minus
3R 23117330..23117424 57..151 100 <- Minus
3R 23117499..23117542 9..56 91   Minus
3R 23116548..23116772 524..748 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:45:21 Download gff for BO17854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18942270..18942494 524..748 99 <- Minus
arm_3R 18942548..18942736 335..523 100 <- Minus
arm_3R 18942803..18942985 152..334 100 <- Minus
arm_3R 18943052..18943146 57..151 100 <- Minus
arm_3R 18943221..18943264 9..56 91   Minus

BO17854.complete Sequence

2452 bp assembled on 2006-12-18

GenBank Submission: FJ634238

> BO17854.complete
GAAGTTATCAGTCGACATGTGGAAGTGCCACAAGTGCGGCAAACCCGTTT
ACTTCGCGGAACGTAAACAATCGATCGGCTACGATTGGCATCCGGAATGT
TTGCGCTGCGAGGAATGCGGCAAACGCTTAAATCCCGGCCAGCATGCTGA
GCACAAAAGTGTGCCCTACTGCCATGTGCCCTGCTATGGCGCCCTGTTTG
GACCCCAGTTGTTTGGCCACGGCACCCGGGTGGAATCGCACAAAAGCTAT
GGGGTGAAGGGAGCCCAGAAGCCAACCGGAGCTCAGGCCAATGGCCCGCC
ACTCCCACGTGATCACCTGGAGTCCAAACTTAAGGTCTACAACCAATTCT
ACGACAACAAAAGCCTGGAGATACGTAGTCGTGAGGTCAACAACCGGTTG
GTGCTGGAAGGCGCGCTTAGAGTTTACTGGGGCGTGCAGGGAGTGATTCA
TCTCAAGGAGGACGATGATCAGCGCATCTTAGTGCGCAAAAGGAACTCTT
GCCGTGTGTCCAAGGCTGCCAATGAAAGCAGTTCGGATAAGGAAAACGAA
GCTAGCGAATCGCTGGCTCCGCCCACCACCACCACAGCCGAGGTCGATCA
ACTATCCACGGATGTTTCCCTTTCCGAGAGCATGACCTTCGACTCCTGTA
GCCTGAACGAGATCTCCGAGTTGCCCACAACCCCAGAAGATGCCTCGGCC
AACACCACAGCCAACAGCAAAGAGCAGACCAATGGTAATGTGTGCAACGA
CGACGAGGATACGACCACGACGGACTCATCTGGAACCCTGGTGGAGGCTC
CTACTGCCAGCACAAGTTGTGTGTCCAGCACATTGCCTTCGAAGTTGGAC
CGTCTGGAAAAACTGGATTGGGACGACATAGACGATCTGCTGCAGGTAGA
GAGACGTCACAACGACAAGGATCGCATTTATGAAACTATGCCTGTCAAAC
TGCCGTCGTCGCAATCCTCCAGCGACAGTTCGCCCAGCAAAACATCCACA
GAGACCACTACGACCACTGAATCAAGCTCGACTCAATCGGCATCAACAAA
CACCAGCAGCACGGATGATTTTATGACCGCCACGGGATCGTTGACTGCCA
ACACCAATACGCAGAATACAACAACGGTGTCTACTACTGAGACCTCTCTG
GATAACTTCGAGACTTGCGATGACGCTACCCTGAAGCCTATTGATTTCGA
GGACTTTAAGCGTAGTGTCCACCAGGACTATGTAAATGGGGCCAACTCCT
TTACGGAGCCCAATGAGGGCACCCTTAAGCGTAATCAACCAATTGATCCC
TCTCGCATTCACGACTCCCTTAAGCTCTACGGCGAGAATTCAGCGATGAG
CAAAAGCTTTAATTGTGAGCATGCATTGCGGTCAATAGATCCCACTTTAA
TCAACGACACCATGAATCTGCGCAGTAGTGTGGGCTCTCCTCACTCCGCA
CAGCGTCAGTACGCCTTACAAAAGAGTGGATCGGCCACAGTAACCAGCAG
GGATCAAAAGAAGCCATATCAACAGGGGCGGCAGTTGTTCGAAAAGGGCA
TCAACCGCTCCAAATCGGGACCCAGCTGTTTTGTGTACTCCGACAGCGAT
GACGACGACGAGGCCACGCTGCGTCCCCAACGTATGGCCACCATTCGACG
CAGCGACATACCTCAGCGGTACATACAAATCCAGATGGACTGTTATCCCA
AAGAGAATGTGGCTGCTGCTAGCGAAGGTGAGTCAAGTCGGGCAGATGCT
CCATCCATAACCAGTGGTGCAGCGGCCGGCGATGAGCTTACGCAAACCGA
GGATTTGTACACTGCAAGCGAGGGCGTTGATGGTCCAGACGGAGATGGAT
CGGCTGGGTTGCATGTGACGGAAGATGGAGTTGTGCTGAGAAGACCTCCA
CGCACAGGAGCTTCTGCCATCAAGCGACGAAGTGGCAATCGTCGTTCTCG
TACCAAGCTGAAACGTCGGTGCTCTATCAATGGTCACTACTACAATCGGG
AGACGTCGTTTTTCACGCCGCCCTACGGTTCTCAAATGTCAGTGTGGGTC
TCCTCGATGGTGACCACCACTGAGGTTATCAACTTGGTGCTGGAGAAATA
CAAGGTGGACAGTTCGCCTGGCAATTTTTCACTCTTCATTGTTCGCGACA
ATGGTGAACAGAAACGTCTCAAGGACGACGAATATCCTTTGATAACGCGC
GTCACTTTGGGACCTCATGAGGATGTGGCTCGTATATTTTTAGTGGATTC
TCGCAAAACTGATGAAATCAGTAATGAAGTTGCTCAATTTTTGAATTTAT
CTTTGCCCGAGTGCCGTGCTATTCTGGAGCGCTACGACCAGGAACTGGCC
CGCGAAGTGGCCAAAATAAAGGAAAGATACGCCGAATTGCGACGTCGTAT
TGTCAGTCGCATGGAATCTCTGAAAGTGCATTTGGCAAGCTTTCTAGACC
AT

BO17854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Rassf-RA 2421 CG4656-PA 1..2418 17..2434 12090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rassf-RA 3473 CG4656-RA 394..2811 17..2434 12090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23115352..23116772 1944..524 7105 100 Minus
3R 32079331 3R 23114964..23115291 2271..1944 1640 100 Minus
3R 32079331 3R 23116820..23117016 529..333 970 99.5 Minus
3R 32079331 3R 23117079..23117265 336..150 935 100 Minus
3R 32079331 3R 23114799..23114906 2376..2269 540 100 Minus
3R 32079331 3R 23117330..23117425 151..56 480 100 Minus
3R 32079331 3R 23114676..23114735 2434..2375 300 100 Minus
3R 32079331 3R 23117499..23117538 56..17 200 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:07:29 has no hits.

BO17854.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:55 Download gff for BO17854.complete
Subject Subject Range Query Range Percent Splice Strand
Rassf-RA 1..2421 17..2438 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:26 Download gff for BO17854.complete
Subject Subject Range Query Range Percent Splice Strand
Rassf-RA 410..2834 9..2438 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:23:18 Download gff for BO17854.complete
Subject Subject Range Query Range Percent Splice Strand
Rassf-RA 394..2811 17..2436 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:56 Download gff for BO17854.complete
Subject Subject Range Query Range Percent Splice Strand
Rassf-RA 410..2834 9..2438 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:17 Download gff for BO17854.complete
Subject Subject Range Query Range Percent Splice Strand
Rassf-RA 394..2811 17..2436 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:17 Download gff for BO17854.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23117330..23117424 57..151 100 <- Minus
3R 23117499..23117538 17..56 100   Minus
3R 23114964..23115290 1945..2271 100 <- Minus
3R 23115352..23116772 524..1944 100 <- Minus
3R 23116826..23117014 335..523 100 <- Minus
3R 23114674..23114733 2377..2436 96 <- Minus
3R 23114799..23114903 2272..2376 100 <- Minus
3R 23117081..23117263 152..334 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:23:18 Download gff for BO17854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18940396..18940455 2377..2436 96 <- Minus
arm_3R 18940521..18940625 2272..2376 100 <- Minus
arm_3R 18940686..18941012 1945..2271 100 <- Minus
arm_3R 18941074..18942494 524..1944 100 <- Minus
arm_3R 18942548..18942736 335..523 100 <- Minus
arm_3R 18942803..18942985 152..334 100 <- Minus
arm_3R 18943052..18943146 57..151 100 <- Minus
arm_3R 18943221..18943260 17..56 100   Minus

BO17854.pep Sequence

Translation from 16 to 2452

> BO17854.pep
MWKCHKCGKPVYFAERKQSIGYDWHPECLRCEECGKRLNPGQHAEHKSVP
YCHVPCYGALFGPQLFGHGTRVESHKSYGVKGAQKPTGAQANGPPLPRDH
LESKLKVYNQFYDNKSLEIRSREVNNRLVLEGALRVYWGVQGVIHLKEDD
DQRILVRKRNSCRVSKAANESSSDKENEASESLAPPTTTTAEVDQLSTDV
SLSESMTFDSCSLNEISELPTTPEDASANTTANSKEQTNGNVCNDDEDTT
TTDSSGTLVEAPTASTSCVSSTLPSKLDRLEKLDWDDIDDLLQVERRHND
KDRIYETMPVKLPSSQSSSDSSPSKTSTETTTTTESSSTQSASTNTSSTD
DFMTATGSLTANTNTQNTTTVSTTETSLDNFETCDDATLKPIDFEDFKRS
VHQDYVNGANSFTEPNEGTLKRNQPIDPSRIHDSLKLYGENSAMSKSFNC
EHALRSIDPTLINDTMNLRSSVGSPHSAQRQYALQKSGSATVTSRDQKKP
YQQGRQLFEKGINRSKSGPSCFVYSDSDDDDEATLRPQRMATIRRSDIPQ
RYIQIQMDCYPKENVAAASEGESSRADAPSITSGAAAGDELTQTEDLYTA
SEGVDGPDGDGSAGLHVTEDGVVLRRPPRTGASAIKRRSGNRRSRTKLKR
RCSINGHYYNRETSFFTPPYGSQMSVWVSSMVTTTEVINLVLEKYKVDSS
PGNFSLFIVRDNGEQKRLKDDEYPLITRVTLGPHEDVARIFLVDSRKTDE
ISNEVAQFLNLSLPECRAILERYDQELAREVAKIKERYAELRRRIVSRME
SLKVHLASFLDH

BO17854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rassf-PA 806 CG4656-PA 1..806 1..806 4197 100 Plus
Muc68D-PB 1514 CG6004-PB 398..882 149..619 192 20.4 Plus
Muc68D-PB 1514 CG6004-PB 500..979 149..613 184 19.4 Plus
Muc68D-PB 1514 CG6004-PB 559..1068 73..602 176 19.2 Plus
CG42525-PB 377 CG42525-PB 88..300 187..395 167 28.4 Plus
CG42525-PA 419 CG42525-PA 107..342 168..395 165 25.7 Plus
Muc96D-PA 881 CG31439-PA 324..516 185..377 165 23.8 Plus
CG42525-PB 377 CG42525-PB 117..311 165..377 159 28 Plus
CG42525-PA 419 CG42525-PA 159..353 165..377 159 28 Plus