Clone BO17857 Report

Search the DGRC for BO17857

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:57
Vector:pDNR-Dual
Associated Gene/Transcriptdalao-RA
Protein status:BO17857.pep: Imported from assembly
Sequenced Size:2281

Clone Sequence Records

BO17857.3prime Sequence

634 bp (632 high quality bases) assembled on 2006-10-13

> BO17857.3prime
ATGGTCTAGAAAGCTTGCGTCCGCCTCGTGCTTCTCCGCCTCTGGATGCT
TGCCAGGTGCTGTTGCCGCTGGCGGAGCTACTCCCCCAGCTACTGCGGCC
TCGCCCAGCGGTGCTCCTCCAGCTGGTCCAGGTGGTGCTCCTGGTCCCGC
TCCTGCCCCGGGCGTGGGATACACTCCGGCTCCGGGCGCCGCTGCTGCTG
CCGCTCCAGCTCCACCGCCTGGGGCCCCGGGTCCTCCACCGCTCGGCTCG
TGCAGGTGTCCTGGTGGCGGTTGTTGTTGTTGCTGCTGCTGTGGTGGCGG
TGGATTGCTTCCATGCTCCGGCGCATACGGATGCCCGGGATTGCCATTGT
GCTGCGGCGGCGGCGGACGCGGTGACATGTAGTGCGAGCCAGGTGGCGGG
CCATAGGACTGCTGATACGGCGAGAACGGTGCGTAGTAGGGCTGTGGCGT
GGGATGTCCGCCGTACTGGGGCTGGTAATAGGGTCGTGCTGGTCCACCGG
GTGGTCCAGGCGGCGGGCCATGTGGTGGTCCGCCGTAGTTAGCATAACCC
GTGTGCGGAGGTGGCGGCGGCAGACCGGGCATTCCCGGCGGCGGCTGATG
CGGCCCCATGTGCGGTGGCATCAAGGAATGTCCG

BO17857.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7055-PA 2250 dalao-RA 1632..2247 634..19 3080 100 Minus
CG7439-PB 3645 AGO2-RB 153..181 295..267 145 100 Minus
CG7439-PC 3654 AGO2-RC 162..190 295..267 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-RA 2668 CG7055-RA 1746..2361 634..19 3080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9151054..9151669 634..19 3080 100 Minus
Blast to na_te.dros performed 2015-02-10 18:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6935 305..110 194 57.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6951 292..58 191 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6961 300..52 181 56.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6884 305..188 161 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6679..6935 415..167 147 54.1 Minus
roo 9092 roo DM_ROO 9092bp 1061..1170 366..257 143 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2430 333..270 139 72.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..7007 366..110 138 55.7 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..728 177..273 133 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2880 311..217 132 62.5 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3334 363..251 131 60.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2443..2504 304..244 127 69.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6981..7034 296..241 122 71.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1581 317..267 120 70.6 Minus
roo 9092 roo DM_ROO 9092bp 1079..1163 333..252 120 63.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2505 302..110 119 54.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2391 311..246 111 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6832..6923 358..273 111 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2432 373..271 110 62.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2430 360..255 106 61.8 Minus

BO17857.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:20 Download gff for BO17857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7055-PA 1632..2250 15..634 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:47:13 Download gff for BO17857.3prime
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 1746..2365 14..634 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:41 Download gff for BO17857.3prime
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 1746..2365 14..634 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:41 Download gff for BO17857.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9151054..9151673 14..634 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:47:13 Download gff for BO17857.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9045087..9045706 14..634 99   Minus

BO17857.5prime Sequence

726 bp (617 high quality bases) assembled on 2006-10-13

> BO17857.5prime
GAAGTTATCAGTCGACATGGCCCTGCCAAGCAACTACAAGCAGATAGCCG
TTGGCGGCCAGGGATCGGCCACACCACTCCAGGGCGGCGGCGGTGGCTCC
GGCGGCGGCAGCCGGTCGCGTTCATCCGGCGGCGGAGGTGGTGGCGATCG
CAACAAGGATCAGACGCCCATCTTCACGCACAGCAACTATGGGAATCCGG
CATTCACGCCACAGAAGGTAACCAAGTCGTCGAGCAGCAAGAACCAGAAC
GAATCAAGGCTACCCAAGCCACCAAAGCCGCCGGAGAAGCCCATTTTGCC
CTACATGCGGTATTCGAAACGCGTCTGGGATAGCGTCAAGGCGAAGCATC
CAGAGCTGAAGCTGTGGGAGCTGGGTAAGAAGATCGGTGCCATGTGGAAG
TTGCTGCCCGAGGATGAGAAGACGGAGTTCATTGACGAATACGAGGCGGA
GAAGCTGGAGTACGAGAAATCGCTAAAGGCCTACCACCAGACGCCCGCCT
ATCAGGCCTACATGTCGGCCAAGAGCAAGGTGAAGACCGACGTGGATATG
CATGAGACACCGTCACGCGGTGGCGGCAGTAAGTCGCAGCATGAGCGACG
CATCGACATTCAGCCGGCGGAGGACGAGGATGACCAGGACGAAGGGTATA
CGACCAACCACTTGGCCCTACGCCGCTATCTGCACAACCATCGCCTGATT
AACAAGATATTCTCGGAGGCCGTTGT

BO17857.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7055-PA 2250 dalao-RA 1..710 17..726 3425 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-RA 2668 CG7055-RA 115..824 17..726 3475 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9149423..9150132 17..726 3445 99 Plus
Blast to na_te.dros performed on 2015-02-13 16:01:45 has no hits.

BO17857.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:21 Download gff for BO17857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7055-PA 1..710 17..726 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:38:46 Download gff for BO17857.5prime
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 115..824 17..726 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:40 Download gff for BO17857.5prime
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 115..824 17..726 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:40 Download gff for BO17857.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9149423..9150132 17..726 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:38:46 Download gff for BO17857.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9043456..9044165 17..726 99   Plus

BO17857.complete Sequence

2281 bp assembled on 2008-11-10

GenBank Submission: KX798135

> BO17857.complete
GAAGTTATCAGTCGACATGGCCCTGCCAAGCAACTACAAGCAGATAGCCG
TTGGCGGCCAGGGATCGGCCACACCACTCCAGGGCGGCGGCGGTGGCTCC
GGCGGCGGCAGCCGGTCGCGTTCATCCGGCGGCGGAGGTGGTGGCGATCG
CAACAAGGATCAGACGCCCATCTTCACGCACAGCAACTATGGGAATCCGG
CATTCACGCCACAGAAGGTAACCAAGTCGTCGAGCAGCAAGAACCAGAAC
GAATCAAGGCTACCCAAGCCACCAAAGCCGCCGGAGAAGCCCATTTTGCC
CTACATGCGGTATTCGAAACGCGTCTGGGATAGCGTCAAGGCGAAGCATC
CAGAGCTGAAGCTGTGGGAGCTGGGTAAGAAGATCGGTGCCATGTGGAAG
TTGCTGCCCGAGGATGAGAAGACGGAGTTCATTGACGAATACGAGGCGGA
GAAGCTGGAGTACGAGAAATCGCTAAAGGCCTACCACCAGACGCCCGCCT
ATCAGGCCTACATGTCGGCCAAGAGCAAGGTGAAGACCGACGTGGATATG
CATGAGACACCGTCACGCGGTGGCGGCAGTAAGTCGCAGCATGAGCGACG
CATCGACATTCAGCCGGCGGAGGACGAGGATGACCAGGACGAAGGGTATA
CGACCAAGCACTTGGCCTACGCCCGCTATCTGCACAACCATCGCCTGATT
AACGAGATATTCTCGGAGGCCGTTGTACCAGATGTGCGTTCAGTGGTGAC
CACCACGCGGATGCAGGTGCTCAAGCGGCAGGTCAGCTCGTTGACGATGC
ACCAGACCAAACTTGAGGCGGAACTGCAGCAGATGGAGGAGAAGTTCGAG
GCCAAGAAGCAGCGCATGGTGGAGTCCAGCGAAGCCTTCCAGGAGGAGCT
AAAGCGCCACTGCAAGCCGGCGGTCGACGAGGAAACTTTCCAGAAGATGG
TGCTTCGCATGTACGAGGACATCAAGCGCGATCGCCAGCGATTGGATGAA
CCGAATGCGAATGCGAATAGCGCAGCGAATCCTGCTGCAGCTGCCGCTAC
AGCTGCCGCCGCTCCAGTGACGAGGAGCGAGGAGGCAGTGAAGCCGCCAA
CGCAGCCAGGTCAGCCCGCTGCCACACCCGCTGGCCAAGAGCCGGCGTCG
GCGGTACCAGCGCCAGCAGCTCCGCCCAAGGAGACACCGCCGGCTGTGAA
GCCCGCTACACTCAATCCCACACCGAGTTCAACGCCTACGCCGGCGCCAG
CGGTGCACGTGCACGAAACTGCCAGCAAAACGGATCCCGAGCCCATGGAC
ATTGAGCCACCGCCGAAGCCATCGGTTCCGCCGCCACCCATCAAGCCAGA
GAAGCTGGAGATGGCCGCTGCCCTGCCTCCGCAGTCAACGCTAGTCGAGC
CACCCAAAACGGAACCCGCCAAAGTGGTGGCCCAGCCCGGCAAGGTGCCC
ACACCGGTGCCGACACCCACACCGCCGCCTGAGGTGGCTCCAGCGGCCGG
AGCAGCTACTGCAGCGACCACAACAACGACGACGACACCAACGCCACCGC
CGGTGCCACAACAGGTGCCACTGCCGCAGCAACAGGGCGGGCCAGCTCCA
CCGCCCGGCATGCCGCAGATGCATCCACATCCCGGCCATCCGCCACCCGG
ACATTCCTTGATGCCACCGCACATGGGGCCGCATCAGCCGCCGCCGGGAA
TGCCCGGTCTGCCGCCGCCACCTCCGCACACGGGTTATGCTAACTACGGC
GGACCACCACATGGCCCGCCGCCTGGACCACCCGGTGGACCAGCACGACC
CTATTACCAGCCCCAGTACGGCGGACATCCCACGCCACAGCCCTACTACG
CACCGTTCTCGCCGTATCAGCAGTCCTATGGCCCGCCACCTGGCTCGCAC
TACATGTCACCGCGTCCGCCGCCGCCGCAGCACAATGGCAATCCCGGGCA
TCCGTATGCGCCGGAGCATGGAAGCAATCCACCGCCACCACAGCAGCAGC
AACAACAACAACCGCCACCAGGACACCTGCACGAGCCGAGCGGTGGAGGA
CCCGGGGCCCCAGGCGGTGGAGCTGGAGCGGCAGCAGCAGCGGCGCCCGG
AGCCGGAGTGTATCCCACGCCCGGGGCAGGAGCGGGACCAGGAGCACCAC
CTGGACCAGCTGGAGGAGCACCGCTGGGCGAGGCCGCAGTAGCTGGGGGA
GTAGCTCCGCCAGCGGCAACAGCACCTGGCAAGCATCCAGAGGCGGAGAA
GCACGAGGCGGACGCAAGCTTTCTAGACCAT

BO17857.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-RA 2250 CG7055-PA 1..2247 17..2263 11235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-RA 2668 CG7055-RA 115..2361 17..2263 11235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9149423..9151669 17..2263 11235 100 Plus
Blast to na_te.dros performed 2014-11-27 00:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6935 1977..2172 194 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6951 1990..2224 191 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6961 1982..2230 181 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6884 1977..2094 161 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6679..6935 1867..2115 147 54.1 Plus
roo 9092 roo DM_ROO 9092bp 1061..1170 1916..2025 143 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2430 1949..2012 139 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..7007 1916..2172 138 55.7 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..728 2105..2009 133 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2880 1971..2065 132 62.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3334 1919..2031 131 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2443..2504 1978..2038 127 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6981..7034 1986..2041 122 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1581 1965..2015 120 70.6 Plus
roo 9092 roo DM_ROO 9092bp 1079..1163 1949..2030 120 63.5 Plus

BO17857.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:13 Download gff for BO17857.complete
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 99..2349 17..2268 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:56 Download gff for BO17857.complete
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 115..2361 17..2265 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:35 Download gff for BO17857.complete
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 99..2345 17..2265 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:06 Download gff for BO17857.complete
Subject Subject Range Query Range Percent Splice Strand
dalao-RA 115..2361 17..2265 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:06 Download gff for BO17857.complete
Subject Subject Range Query Range Percent Splice Strand
X 9149423..9151669 17..2265 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:56 Download gff for BO17857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9043456..9045702 17..2265 99   Plus

BO17857.pep Sequence

Translation from 16 to 2281

> BO17857.pep
MALPSNYKQIAVGGQGSATPLQGGGGGSGGGSRSRSSGGGGGGDRNKDQT
PIFTHSNYGNPAFTPQKVTKSSSSKNQNESRLPKPPKPPEKPILPYMRYS
KRVWDSVKAKHPELKLWELGKKIGAMWKLLPEDEKTEFIDEYEAEKLEYE
KSLKAYHQTPAYQAYMSAKSKVKTDVDMHETPSRGGGSKSQHERRIDIQP
AEDEDDQDEGYTTKHLAYARYLHNHRLINEIFSEAVVPDVRSVVTTTRMQ
VLKRQVSSLTMHQTKLEAELQQMEEKFEAKKQRMVESSEAFQEELKRHCK
PAVDEETFQKMVLRMYEDIKRDRQRLDEPNANANSAANPAAAAATAAAAP
VTRSEEAVKPPTQPGQPAATPAGQEPASAVPAPAAPPKETPPAVKPATLN
PTPSSTPTPAPAVHVHETASKTDPEPMDIEPPPKPSVPPPPIKPEKLEMA
AALPPQSTLVEPPKTEPAKVVAQPGKVPTPVPTPTPPPEVAPAAGAATAA
TTTTTTTPTPPPVPQQVPLPQQQGGPAPPPGMPQMHPHPGHPPPGHSLMP
PHMGPHQPPPGMPGLPPPPPHTGYANYGGPPHGPPPGPPGGPARPYYQPQ
YGGHPTPQPYYAPFSPYQQSYGPPPGSHYMSPRPPPPQHNGNPGHPYAPE
HGSNPPPPQQQQQQQPPPGHLHEPSGGGPGAPGGGAGAAAAAAPGAGVYP
TPGAGAGPGAPPGPAGGAPLGEAAVAGGVAPPAATAPGKHPEAEKHEADA
SFLDH

BO17857.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
dalao-PA 749 CG7055-PA 1..749 1..749 4101 100 Plus
CG15021-PA 420 CG15021-PA 35..370 359..750 410 33.9 Plus
CG15021-PA 420 CG15021-PA 59..408 339..727 392 31.7 Plus
osa-PE 2555 CG7467-PE 1..475 315..755 349 28.1 Plus
osa-PC 2556 CG7467-PC 1..475 315..755 349 28.1 Plus
osa-PF 2559 CG7467-PF 1..475 315..755 349 28.1 Plus
osa-PE 2555 CG7467-PE 1270..1606 360..689 245 29.7 Plus
osa-PC 2556 CG7467-PC 1271..1607 360..689 245 29.7 Plus
osa-PE 2555 CG7467-PE 1158..1576 364..747 242 27.7 Plus
osa-PC 2556 CG7467-PC 1159..1577 364..747 242 27.7 Plus
osa-PE 2555 CG7467-PE 514..936 338..755 230 25.6 Plus
osa-PC 2556 CG7467-PC 514..936 338..755 230 25.6 Plus
osa-PE 2555 CG7467-PE 406..830 328..737 225 25.8 Plus
osa-PC 2556 CG7467-PC 406..830 328..737 225 25.8 Plus
CG15021-PA 420 CG15021-PA 203..418 361..596 211 30.7 Plus
osa-PE 2555 CG7467-PE 1119..1422 491..747 197 27.4 Plus
osa-PC 2556 CG7467-PC 1120..1423 491..747 197 27.4 Plus
osa-PE 2555 CG7467-PE 1355..1607 361..594 172 28.4 Plus
osa-PC 2556 CG7467-PC 1356..1608 361..594 172 28.4 Plus