Clone Sequence Records
BO17858.3prime Sequence
854 bp (780 high quality bases) assembled on 2006-10-13
> BO17858.3prime
ATGGTCTAGAAAGCTTGCAAGATTCACCACATTCTTGAGATCCGGCGGCA
GCAAGCCCTTCATGCACTCAATCTGGGCGCGTATCTGCTGCTGAGTTGAG
CCATTGTTGCCCTCCAGCTGCGTGGCTTTGTCGCCATAGAGATTCAGTTT
TTGCTTGAGCTTGAGTATCATATCGATGATCTCCACCTCCTGCTTGTCGT
GCGCCCAGTGCTCGAGATTCGCCACGGATAGCGCCTGCAGCTGTAGATCC
TGCAGCGTTAGCTGCAGCTCCCGATGACGTGCACCGTACCAGCCGCGAAA
ATTGGGCGATCGAAAGAAGCGTCTGTACAGGCCCTTCCAGTCGCCCTTCA
GCGGCGACGTTAGCTGCGGCCCAGCGGTTTCCAGCGTGCCCAGAAAGTCA
TCCAGCTTAAAGCTGTTGGCATTCGGCGCCGACTTAAACGGACTGATGTC
CTTTTGCAGCGGCATCAGTGATGCCATATACCGTTCCAGTGGTATCATAA
AGCTTTGCGTCAGCTCGAGCAGATGGCGTCGTATCAGTGCGGTTTGCACA
TGCTCCGGCCGCTTGGTCTTCATGCCCAGCAGCACCTTTTTGATCAGCGC
CTTGTCCTTTTTCAGGTACGGCCTATATTTACTGTGCAGGCCCGCGGACG
AGGCATCGCCCGAGCCATTGCTGGAACTGGAGCTGCCATTGAGATTGGTG
TTCGATTTCAGTGCTATACGGCCACCGAGTTCCGTTGAACTGGAAAATGA
TGTGGCCGATGCGATGTTCCTTGCGTGTTTTTGGCCCAGCAGCAGATGCT
GTTGCTGCTGCATGTTCTTCTGGTTGTCCACCAGTCGCAGCATGTGCGGC
CAAT
BO17858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-PA | 1905 | CG3309-RA | 1067..1902 | 854..19 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-RA | 2614 | CG3309-RA | 1145..1980 | 854..19 | 4180 | 100 | Minus |
| CG3309-RB | 2611 | CG3309-RB | 1145..1977 | 854..19 | 4125 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5327309..5328112 | 19..822 | 4020 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6861 | 850..748 | 132 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6846 | 850..748 | 121 | 63.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1145 | 850..792 | 115 | 66.1 | Minus |
BO17858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:22 Download gff for
BO17858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-PA | 1067..1905 | 16..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:21:44 Download gff for
BO17858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 1148..1983 | 19..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:40:56 Download gff for
BO17858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 1145..1980 | 19..854 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:40:56 Download gff for
BO17858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5327309..5328109 | 19..819 | 100 | <- | Plus |
| X | 5328169..5328203 | 820..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:21:44 Download gff for
BO17858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5221342..5222142 | 19..819 | 100 | <- | Plus |
| arm_X | 5222202..5222236 | 820..854 | 100 | | Plus |
BO17858.5prime Sequence
817 bp (756 high quality bases) assembled on 2006-10-13
> BO17858.5prime
GAAGTTATCAGTCGACATGAGCGCGGATGCGAGAATCAAGCAGATGGCGC
CATCGCTGGACACCACCGAACGGGAGAGGGAGCACCAGAACGTGGATGCC
ACCAACTCGAACTCGGAGCCCAGTGCCAGCGATTGGGTGAACTTCTCGCA
ATGGATGCACTGCTTCTGCGTGGTCACCTTCGATCTAAATCTTGGGCAGG
CGCTGGAGCACGTCTATCCGCCGGCTTTCATGCCCAGCGACCAGGAGGTT
AGCAACATTTGCTACATGGCCTTCCCGGACTCAAATTCCGGCTGCATGGG
CGACACCAAGTTCCACATGCGATTGCGCTGCACAACGCGTCGGGATTCCT
TGCCGGGCTACAATGCGGAATGCTCGCCGGCGCTGCGACAGGATGGCTCC
CACTACTGGGGCTTCGTCTACTTTCGCCAGAAGCGGGACGCGAATCTGCC
GCGTGGTTACTTCCAGAAGAGCTTTATAATCATTACACGACTGCCGTTCT
TCAATCTGTACTACGACATACTCTCCCAGCTGGCGCCGCGCTACTTTGAG
GAGGGCACCGACGTCCTGCGTCTGGCCAGCGAGCAAATTAATCGCCAGTG
GCCCGGCCTGCGAGTGGGTAAGCCGCTCCAGCTGCCTCTGCTGGATTGCA
GCTATCAGATCTGCATACCGCGGACCAGCAGCAGTCGAAAGTCGACGGCC
GATGGAGGCATCGCAGGTGGTGCGGTGGAATCGCCACCAGCCATGGCTGC
TTGCCCGGCAGCCCAAGTGCTGGCCTCCGTTAATGAAATCGAACTCTTCC
GCTCCCTGGACTTTGTC
BO17858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-PA | 1905 | CG3309-RA | 1..801 | 17..817 | 3980 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-RB | 2611 | CG3309-RB | 79..879 | 17..817 | 3990 | 99.9 | Plus |
| CG3309-RA | 2614 | CG3309-RA | 79..879 | 17..817 | 3990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5328469..5329269 | 817..17 | 3990 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:33:43 has no hits.
BO17858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:22 Download gff for
BO17858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:49 Download gff for
BO17858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 78..882 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:58:58 Download gff for
BO17858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 75..879 | 9..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:58:58 Download gff for
BO17858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5328469..5329273 | 9..817 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:49 Download gff for
BO17858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5222502..5223306 | 9..817 | 99 | | Minus |
BO17858.complete Sequence
1936 bp assembled on 2008-08-15
GenBank Submission: KX795863
> BO17858.complete
GAAGTTATCAGTCGACATGAGCGCGGATGCGAGAATCAAGCAGATGGCGC
CATCGCTGGACACCACCGAACGGGAGAGGGAGCACCAGAACGTGGATGCC
ACCAACTCGAACTCGGAGCCCAGTGCCAGCGATTGGGTGAACTTCTCGCA
ATGGATGCACTGCTTCTGCGTGGTCACCTTCGATCTAAATCTTGGGCAGG
CGCTGGAGCACGTCTATCCGCCGGCTTTCATGCCCAGCGACCAGGAGGTT
AGCAACATTTGCTACATGGCCTTCCCGGACTCAAATTCCGGCTGCATGGG
CGACACCAAGTTCCACATGCGATTGCGCTGCACAACGCGTCGGGATTCCT
TGCCGGGCTACAATGCGGAATGCTCGCCGGCGCTGCGACAGGATGGCTCC
CACTACTGGGGCTTCGTCTACTTTCGCCAGAAGCGGGACGCGAATCTGCC
GCGTGGTTACTTCCAGAAGAGCTTTATAATCATTACACGACTGCCGTTCT
TCAATCTGTACTACGACATACTCTCCCAGCTGGCGCCGCGCTACTTTGAG
GAGGGCACCGACGTCCTGCGTCTGGCCAGCGAGCAAATTAATCGCCAGTG
GCCCGGCCTGCGAGTGGGTAAGCCGCTCCAGCTGCCTCTGCTGGATTGCA
GCTATCAGATCTGCATACCGCGGACCAGCAGCAGTCGAAAGTCGACGGCC
GATGGAGGCATCGCAGGTGGTGCGGTGGAATCGCCACCAGCCATGGCTGC
TTGCCCGGCAGCCAAAGTGCTGGCCTCCGTTAATGAAATCGAACTCTTCC
GCTCCCTGGACTTTGTCATGGAGCAACTGTACACGCTGTGGGAGCTGGTC
ATCACCGCCGAGCCCATTGTTGTCGTTGGCACCTCACCCGCCGACTGCTC
CCACATGGTGCAGACCCTTCTGGCCATGATTGCTCCGCTGGAGTATTGCG
CCGAGGCGCGTCCCTACTTCACCATTCACGACAGCGAATTTCGCGAATTC
ACACAAGAGTGCAGCAGCAAGACCACACTGCCCGCCTGCATTTTGGGCGT
CACGAATCCGTTCTTTGTGAAGCTCCTGAAGGATTGGCCGCACATGCTGC
GACTGGTGGACAACCAGAAGAACATGCAGCAGCAACAGCATCTGCTGCTG
GGCCAAAAACACGCAAGGAACATCGCATCGGCCACATCATTTTCCAGTTC
AACGGAACTCGGTGGCCGTATAGCACTGAAATCGAACACCAATCTCAATG
GCAGCTCCAGTTCCAGCAATGGCTCGGGCGATGCCTCGTCCGCGGGCCTG
CACAGTAAATATAGGCCGTACCTGAAAAAGGACAAGGCGCTGATCAAAAA
GGTGCTGCTGGGCATGAAGACCAAGCGGCCGGAGCATGTGCAAACCGCAC
TGATACGACGCCATCTGCTCGAGCTGACGCAAAGCTTTATGATACCACTG
GAACGGTATATGGCATCACTGATGCCGCTGCAAAAGGACATCAGTCCGTT
TAAGTCGGCGCCGAATGCCAACAGCTTTAAGCTGGATGACTTTCTGGGCA
CGCTGGAAACCGCTGGGCCGCAGCTAACGTCGCCGCTGAAGGGCGACTGG
AAGGGCCTGTACAGACGCTTCTTTCGATCGCCCAATTTTCGCGGCTGGTA
CGGTGCACGTCATCGGGAGCTGCAGCTAACGCTGCAGGATCTACAGCTGC
AGGCGCTATCCGTGGCGAATCTCGAGCACTGGGCGCACGACAAGCAGGAG
GTGGAGATCATCGATATGATACTCAAGCTCAAGCAAAAACTGAATCTCTA
TGGCGACAAAGCCACGCAGCTGGAGGGCAACAATGGCTCAACTCAGCAGC
AGATACGCGCCCAGATTGAGTGCATGAAGGGCTTGCTGCCGCCGGATCTC
AAGAATGTGGTGAATCTTGCAAGCTTTCTAGACCAT
BO17858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-RA | 1905 | CG3309-PA | 1..1902 | 17..1918 | 9510 | 100 | Plus |
| CG3309-RB | 1902 | CG3309-PB | 1..1899 | 17..1918 | 9430 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-RA | 2614 | CG3309-RA | 79..1980 | 17..1918 | 9510 | 100 | Plus |
| CG3309-RB | 2611 | CG3309-RB | 79..1977 | 17..1918 | 9430 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5328169..5329269 | 1117..17 | 5505 | 100 | Minus |
| X | 23542271 | X | 5327309..5328112 | 1918..1115 | 4020 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6861 | 1087..1189 | 132 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6846 | 1087..1189 | 121 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1145 | 1087..1145 | 115 | 66.1 | Plus |
BO17858.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:56 Download gff for
BO17858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 64..1972 | 9..1921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:17 Download gff for
BO17858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 82..1983 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:16 Download gff for
BO17858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 68..1969 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:26 Download gff for
BO17858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3309-RA | 79..1980 | 17..1920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:26 Download gff for
BO17858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5327306..5328109 | 1118..1920 | 99 | <- | Minus |
| X | 5328169..5329269 | 17..1117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:17 Download gff for
BO17858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5221339..5222142 | 1118..1920 | 99 | <- | Minus |
| arm_X | 5222202..5223302 | 17..1117 | 100 | | Minus |
BO17858.pep Sequence
Translation from 16 to 1936
> BO17858.pep
MSADARIKQMAPSLDTTEREREHQNVDATNSNSEPSASDWVNFSQWMHCF
CVVTFDLNLGQALEHVYPPAFMPSDQEVSNICYMAFPDSNSGCMGDTKFH
MRLRCTTRRDSLPGYNAECSPALRQDGSHYWGFVYFRQKRDANLPRGYFQ
KSFIIITRLPFFNLYYDILSQLAPRYFEEGTDVLRLASEQINRQWPGLRV
GKPLQLPLLDCSYQICIPRTSSSRKSTADGGIAGGAVESPPAMAACPAAK
VLASVNEIELFRSLDFVMEQLYTLWELVITAEPIVVVGTSPADCSHMVQT
LLAMIAPLEYCAEARPYFTIHDSEFREFTQECSSKTTLPACILGVTNPFF
VKLLKDWPHMLRLVDNQKNMQQQQHLLLGQKHARNIASATSFSSSTELGG
RIALKSNTNLNGSSSSSNGSGDASSAGLHSKYRPYLKKDKALIKKVLLGM
KTKRPEHVQTALIRRHLLELTQSFMIPLERYMASLMPLQKDISPFKSAPN
ANSFKLDDFLGTLETAGPQLTSPLKGDWKGLYRRFFRSPNFRGWYGARHR
ELQLTLQDLQLQALSVANLEHWAHDKQEVEIIDMILKLKQKLNLYGDKAT
QLEGNNGSTQQQIRAQIECMKGLLPPDLKNVVNLASFLDH
BO17858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3309-PA | 634 | CG3309-PA | 1..634 | 1..634 | 3331 | 100 | Plus |
| CG3309-PB | 633 | CG3309-PB | 1..633 | 1..634 | 3314 | 99.8 | Plus |
