Clone BO17862 Report

Search the DGRC for BO17862

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptgrp-RA
Protein status:BO17862.pep: validated full length
Sequenced Size:1570

Clone Sequence Records

BO17862.3prime Sequence

770 bp (684 high quality bases) assembled on 2006-10-13

> BO17862.3prime
ATGGTCTAGAAAGCTTGCAGGCACCGAATTTGTAGCAATCGCAATCGGCC
AGGTGGTGGGTCCTTTAAGCACGATATCCTCCAGGGCGTTTTTGATCTTG
ATAAATCGTCGTTTAAACTCCAAGCCGCAACCCTTTGACAGCCGGCAGTC
AACAAGAATCTTGCCATCCATCTCTATAATGTGTGCCTTGAAAACCAATC
GCAGCTTATTCCGATCGACTGTGGATACGGTGACCACTCCGTCGTCACCA
AATTTGCACGTATAACCACCCAGTCTTTCGATGGTTCCCACCAATCGCTT
GATAGTGTCATCCCATCGTGTGGTCACAAAGAATCGGGTCATTCTCCTCA
CCAAACGCTGGAAATAGTTCTGGGAAGCGTTCTGCGTTTGGTTCATCTGG
GTAGCCAGTAGGAGATCATCAAGCAAAGCTGGTTGCGAGAAGGAGTAACT
GAGCCGAGCCTCCTGGGCCAACGTCTGGCGGTCGCCTCCATCCTCCTTGG
ATCGGCCACTGCCCAGTCTGACATTGAAGTCATCGTCGCTGCGCATTGTG
GGCATGGGTTGAGAGCAGTAGTTCCGGGAGATGGAGTCATCCAGGCCATT
GCTCAAGTGGGCACTAGACTGCAGACGCTGCCTCTTAGCCTTTGGCGAGC
ATATCTCCAGGGCAGCCGCCGAGTCCACCAGGTCATAGGAACGTTCATTG
TCTGCAAACTGCATGTTGCACCATTTGTGATCCAGGGTTTTCTCCAGGGT
CAAACGCGTGCCAGGACTGG

BO17862.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17161-PD 1197 grp-RD 443..1194 770..19 3760 100 Minus
CG17161-PB 1539 grp-RB 785..1536 770..19 3760 100 Minus
CG17161-PC 1539 grp-RC 785..1536 770..19 3760 100 Minus
CG17161-PA 1539 grp-RA 785..1536 770..19 3760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
grp-RF 2010 CG17161-RF 971..1722 770..19 3760 100 Minus
grp-RD 1649 CG17161-RD 610..1361 770..19 3760 100 Minus
grp-RA 2563 CG17161-RA 1524..2275 770..19 3760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16698961..16699638 696..19 3390 100 Minus
2L 23513712 2L 16698274..16698348 770..696 375 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:03:06 has no hits.

BO17862.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:25 Download gff for BO17862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17161-PA 785..1539 18..770 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:00 Download gff for BO17862.3prime
Subject Subject Range Query Range Percent Splice Strand
grp-RA 1524..2285 6..770 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:47 Download gff for BO17862.3prime
Subject Subject Range Query Range Percent Splice Strand
grp-RA 1524..2285 6..770 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:47 Download gff for BO17862.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16698274..16698348 696..770 100 -> Minus
2L 16698962..16699648 6..695 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:00 Download gff for BO17862.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16698274..16698348 696..770 100 -> Minus
arm_2L 16698962..16699648 6..695 99   Minus

BO17862.5prime Sequence

898 bp (769 high quality bases) assembled on 2006-10-13

> BO17862.5prime
GAAGTTATCAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTC
CTGCGGCCACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTG
GGCGAAGGTGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGG
CGAGGCTGTGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAG
CGAACTCGGTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAG
CATATCCTCCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACAT
ATTCCTGGAATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAG
ACGTGGGAATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTG
TCCGGACTCAATTACCTGCATCAGCGTGGGATCGCTCATCGGGATCTGAA
GCCGGAAAATCTGCTGCTTGACGAGCATGACAACGTGAAAATATCGGACT
TTGGCATGGCTACTATGTTTAGGTGCAAGGGCAAGGAGCGACTGCTGGAC
AAACGCTGCGGCACCTTGCCGTATGTGGCGCCCGAGGTGCTACAGAAGGC
ATATCACGCCCAGCCGGCGGATCTCTGGTCGTGTGGCGTTATATTGGTGA
CAATGCTGGCGGGTGAGCTGCCCTGGGATCAGCCGTCCACCAATTGCACG
GAGTTCACCAACTGGAGGGATAACGATCACTGGCAACTGCAGACTCCTTG
GAGCAAACTGGACACCTTGGCTATTTCGCTGCTTCGCAAGCTGCTGGCCA
CCAGTCTTGGCACGCGTTTGACCCTGAAGAAAACCCTGGATCAACAATGG
TGCAACATGCAGTTTGCAGACAATGAACGTTCCTATGACCTGATGGAA

BO17862.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17161-PB 1539 grp-RB 1..876 17..892 4280 99.5 Plus
CG17161-PC 1539 grp-RC 1..876 17..892 4280 99.5 Plus
CG17161-PA 1539 grp-RA 1..876 17..892 4280 99.5 Plus
CG17161-PD 1197 grp-RD 1..534 359..892 2570 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
grp-RA 2563 CG17161-RA 739..1620 16..897 4335 99.4 Plus
grp-RB 2234 CG17161-RB 410..1291 16..897 4335 99.4 Plus
grp-RC 2344 CG17161-RC 520..1401 16..897 4335 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16691901..16692124 121..344 1120 100 Plus
2L 23513712 2L 16698138..16698348 665..875 995 98.1 Plus
2L 23513712 2L 16696583..16696764 343..524 910 100 Plus
2L 23513712 2L 16697499..16697643 521..665 725 100 Plus
2L 23513712 2L 16691088..16691193 16..121 530 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:10:47 has no hits.

BO17862.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:25 Download gff for BO17862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17161-PA 1..880 17..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:27 Download gff for BO17862.5prime
Subject Subject Range Query Range Percent Splice Strand
grp-RC 512..1401 9..898 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:06 Download gff for BO17862.5prime
Subject Subject Range Query Range Percent Splice Strand
grp-RC 512..1401 9..898 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:06 Download gff for BO17862.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16698139..16698348 666..875 98 -> Plus
2L 16698962..16698983 876..898 91   Plus
2L 16691080..16691192 9..120 97 -> Plus
2L 16691901..16692124 121..344 100 -> Plus
2L 16696585..16696762 345..522 100 -> Plus
2L 16697501..16697643 523..665 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:27 Download gff for BO17862.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16691080..16691192 9..120 97 -> Plus
arm_2L 16691901..16692124 121..344 100 -> Plus
arm_2L 16696585..16696762 345..522 100 -> Plus
arm_2L 16697501..16697643 523..665 100 -> Plus
arm_2L 16698139..16698348 666..875 98 -> Plus
arm_2L 16698962..16698983 876..898 91   Plus

BO17862.complete Sequence

1570 bp assembled on 2006-10-11

GenBank Submission: FJ634239

> BO17862.complete
GAAGTTATCAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTC
CTGCGGCCACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTG
GGCGAAGGTGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGG
CGAGGCTGTGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAG
CGAACTCGGTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAG
CATATCCTCCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACAT
ATTCCTGGAATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAG
ACGTGGGAATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTG
TCCGGACTCAATTACCTGCATCAGCGTGGGATCGCTCATCGGGATCTGAA
GCCGGAAAATCTGCTGCTTGACGAGCATGACAACGTGAAAATATCGGACT
TTGGCATGGCTACTATGTTTAGGTGCAAGGGCAAGGAGCGACTGCTGGAC
AAACGCTGCGGCACCTTGCCGTATGTGGCGCCCGAGGTGCTACAGAAGGC
ATATCACGCCCAGCCGGCGGATCTCTGGTCGTGTGGCGTTATATTGGTGA
CAATGCTGGCGGGTGAGCTGCCCTGGGATCAGCCGTCCACCAATTGCACG
GAGTTCACCAACTGGAGGGATAACGATCACTGGCAACTGCAGACTCCTTG
GAGCAAACTGGACACCTTGGCTATTTCGCTGCTTCGCAAGCTGCTGGCCA
CCAGTCCTGGCACGCGTTTGACCCTGGAGAAAACCCTGGATCACAAATGG
TGCAACATGCAGTTTGCAGACAATGAACGTTCCTATGACCTGGTGGACTC
GGCGGCTGCCCTGGAGATATGCTCGCCAAAGGCTAAGAGGCAGCGTCTGC
AGTCTAGTGCCCACTTGAGCAATGGCCTGGATGACTCCATCTCCCGGAAC
TACTGCTCTCAACCCATGCCCACAATGCGCAGCGACGATGACTTCAATGT
CAGACTGGGCAGTGGCCGATCCAAGGAGGATGGAGGCGACCGCCAGACGT
TGGCCCAGGAGGCTCGGCTCAGTTACTCCTTCTCGCAACCAGCTTTGCTT
GATGATCTCCTACTGGCTACCCAGATGAACCAAACGCAGAACGCTTCCCA
GAACTATTTCCAGCGTTTGGTGAGGAGAATGACCCGATTCTTTGTGACCA
CACGATGGGATGACACTATCAAGCGATTGGTGGGAACCATCGAAAGACTG
GGTGGTTATACGTGCAAATTTGGTGACGACGGAGTGGTCACCGTATCCAC
AGTCGATCGGAATAAGCTGCGATTGGTTTTCAAGGCACACATTATAGAGA
TGGATGGCAAGATTCTTGTTGACTGCCGGCTGTCAAAGGGTTGCGGCTTG
GAGTTTAAACGACGATTTATCAAGATCAAAAACGCCCTGGAGGATATCGT
GCTTAAAGGACCCACCACCTGGCCGATTGCGATTGCTACAAATTCGGTGC
CTGCAAGCTTTCTAGACCAT

BO17862.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
grp-RA 1539 CG17161-PA 1..1536 17..1552 7680 100 Plus
grp-RB 1539 CG17161-PB 1..1536 17..1552 7680 100 Plus
grp-RC 1539 CG17161-PC 1..1536 17..1552 7680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
grp-RA 2563 CG17161-RA 739..2275 16..1552 7685 100 Plus
grp-RB 2234 CG17161-RB 410..1946 16..1552 7685 100 Plus
grp-RC 2344 CG17161-RC 520..2056 16..1552 7685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16698961..16699638 875..1552 3390 100 Plus
2L 23513712 2L 16691901..16692124 121..344 1120 100 Plus
2L 23513712 2L 16698138..16698348 665..875 1055 100 Plus
2L 23513712 2L 16696583..16696764 343..524 910 100 Plus
2L 23513712 2L 16697499..16697643 521..665 725 100 Plus
2L 23513712 2L 16691088..16691193 16..121 530 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:26:18 has no hits.

BO17862.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:30 Download gff for BO17862.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RA 1..1539 17..1553 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:04 Download gff for BO17862.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RA 944..2498 9..1565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:07 Download gff for BO17862.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RC 521..2056 17..1554 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:30 Download gff for BO17862.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RA 944..2498 9..1565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:28 Download gff for BO17862.complete
Subject Subject Range Query Range Percent Splice Strand
grp-RC 521..2056 17..1554 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:28 Download gff for BO17862.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16691089..16691192 17..120 100 -> Plus
2L 16691901..16692124 121..344 100 -> Plus
2L 16696585..16696762 345..522 100 -> Plus
2L 16697501..16697643 523..665 100 -> Plus
2L 16698139..16698348 666..875 100 -> Plus
2L 16698962..16699638 876..1554 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:07 Download gff for BO17862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16691089..16691192 17..120 100 -> Plus
arm_2L 16691901..16692124 121..344 100 -> Plus
arm_2L 16696585..16696762 345..522 100 -> Plus
arm_2L 16697501..16697643 523..665 100 -> Plus
arm_2L 16698139..16698348 666..875 100 -> Plus
arm_2L 16698962..16699638 876..1554 99   Plus

BO17862.pep Sequence

Translation from 16 to 1570

> BO17862.pep
MAATLTEAGTGPAATREFVEGWTLAQTLGEGAYGEVKLLINRQTGEAVAM
KMVDLKKHPDAANSVRKEVCIQKMLQDKHILRFFGKRSQGSVEYIFLEYA
AGGELFDRIEPDVGMPQHEAQRYFTQLLSGLNYLHQRGIAHRDLKPENLL
LDEHDNVKISDFGMATMFRCKGKERLLDKRCGTLPYVAPEVLQKAYHAQP
ADLWSCGVILVTMLAGELPWDQPSTNCTEFTNWRDNDHWQLQTPWSKLDT
LAISLLRKLLATSPGTRLTLEKTLDHKWCNMQFADNERSYDLVDSAAALE
ICSPKAKRQRLQSSAHLSNGLDDSISRNYCSQPMPTMRSDDDFNVRLGSG
RSKEDGGDRQTLAQEARLSYSFSQPALLDDLLLATQMNQTQNASQNYFQR
LVRRMTRFFVTTRWDDTIKRLVGTIERLGGYTCKFGDDGVVTVSTVDRNK
LRLVFKAHIIEMDGKILVDCRLSKGCGLEFKRRFIKIKNALEDIVLKGPT
TWPIAIATNSVPASFLDH

BO17862.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
grp-PA 512 CG17161-PA 1..512 1..512 2688 100 Plus
grp-PB 512 CG17161-PB 1..512 1..512 2688 100 Plus
grp-PC 512 CG17161-PC 1..512 1..512 2688 100 Plus
grp-PF 398 CG17161-PF 1..398 115..512 2105 100 Plus
grp-PD 398 CG17161-PD 1..398 115..512 2105 100 Plus