Clone Sequence Records
BO17862.3prime Sequence
770 bp (684 high quality bases) assembled on 2006-10-13
> BO17862.3prime
ATGGTCTAGAAAGCTTGCAGGCACCGAATTTGTAGCAATCGCAATCGGCC
AGGTGGTGGGTCCTTTAAGCACGATATCCTCCAGGGCGTTTTTGATCTTG
ATAAATCGTCGTTTAAACTCCAAGCCGCAACCCTTTGACAGCCGGCAGTC
AACAAGAATCTTGCCATCCATCTCTATAATGTGTGCCTTGAAAACCAATC
GCAGCTTATTCCGATCGACTGTGGATACGGTGACCACTCCGTCGTCACCA
AATTTGCACGTATAACCACCCAGTCTTTCGATGGTTCCCACCAATCGCTT
GATAGTGTCATCCCATCGTGTGGTCACAAAGAATCGGGTCATTCTCCTCA
CCAAACGCTGGAAATAGTTCTGGGAAGCGTTCTGCGTTTGGTTCATCTGG
GTAGCCAGTAGGAGATCATCAAGCAAAGCTGGTTGCGAGAAGGAGTAACT
GAGCCGAGCCTCCTGGGCCAACGTCTGGCGGTCGCCTCCATCCTCCTTGG
ATCGGCCACTGCCCAGTCTGACATTGAAGTCATCGTCGCTGCGCATTGTG
GGCATGGGTTGAGAGCAGTAGTTCCGGGAGATGGAGTCATCCAGGCCATT
GCTCAAGTGGGCACTAGACTGCAGACGCTGCCTCTTAGCCTTTGGCGAGC
ATATCTCCAGGGCAGCCGCCGAGTCCACCAGGTCATAGGAACGTTCATTG
TCTGCAAACTGCATGTTGCACCATTTGTGATCCAGGGTTTTCTCCAGGGT
CAAACGCGTGCCAGGACTGG
BO17862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17161-PD | 1197 | grp-RD | 443..1194 | 770..19 | 3760 | 100 | Minus |
CG17161-PB | 1539 | grp-RB | 785..1536 | 770..19 | 3760 | 100 | Minus |
CG17161-PC | 1539 | grp-RC | 785..1536 | 770..19 | 3760 | 100 | Minus |
CG17161-PA | 1539 | grp-RA | 785..1536 | 770..19 | 3760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-RF | 2010 | CG17161-RF | 971..1722 | 770..19 | 3760 | 100 | Minus |
grp-RD | 1649 | CG17161-RD | 610..1361 | 770..19 | 3760 | 100 | Minus |
grp-RA | 2563 | CG17161-RA | 1524..2275 | 770..19 | 3760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16698961..16699638 | 696..19 | 3390 | 100 | Minus |
2L | 23513712 | 2L | 16698274..16698348 | 770..696 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:03:06 has no hits.
BO17862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:25 Download gff for
BO17862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17161-PA | 785..1539 | 18..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:00 Download gff for
BO17862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 1524..2285 | 6..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:47 Download gff for
BO17862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 1524..2285 | 6..770 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:47 Download gff for
BO17862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16698274..16698348 | 696..770 | 100 | -> | Minus |
2L | 16698962..16699648 | 6..695 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:00 Download gff for
BO17862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16698274..16698348 | 696..770 | 100 | -> | Minus |
arm_2L | 16698962..16699648 | 6..695 | 99 | | Minus |
BO17862.5prime Sequence
898 bp (769 high quality bases) assembled on 2006-10-13
> BO17862.5prime
GAAGTTATCAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTC
CTGCGGCCACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTG
GGCGAAGGTGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGG
CGAGGCTGTGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAG
CGAACTCGGTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAG
CATATCCTCCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACAT
ATTCCTGGAATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAG
ACGTGGGAATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTG
TCCGGACTCAATTACCTGCATCAGCGTGGGATCGCTCATCGGGATCTGAA
GCCGGAAAATCTGCTGCTTGACGAGCATGACAACGTGAAAATATCGGACT
TTGGCATGGCTACTATGTTTAGGTGCAAGGGCAAGGAGCGACTGCTGGAC
AAACGCTGCGGCACCTTGCCGTATGTGGCGCCCGAGGTGCTACAGAAGGC
ATATCACGCCCAGCCGGCGGATCTCTGGTCGTGTGGCGTTATATTGGTGA
CAATGCTGGCGGGTGAGCTGCCCTGGGATCAGCCGTCCACCAATTGCACG
GAGTTCACCAACTGGAGGGATAACGATCACTGGCAACTGCAGACTCCTTG
GAGCAAACTGGACACCTTGGCTATTTCGCTGCTTCGCAAGCTGCTGGCCA
CCAGTCTTGGCACGCGTTTGACCCTGAAGAAAACCCTGGATCAACAATGG
TGCAACATGCAGTTTGCAGACAATGAACGTTCCTATGACCTGATGGAA
BO17862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17161-PB | 1539 | grp-RB | 1..876 | 17..892 | 4280 | 99.5 | Plus |
CG17161-PC | 1539 | grp-RC | 1..876 | 17..892 | 4280 | 99.5 | Plus |
CG17161-PA | 1539 | grp-RA | 1..876 | 17..892 | 4280 | 99.5 | Plus |
CG17161-PD | 1197 | grp-RD | 1..534 | 359..892 | 2570 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-RA | 2563 | CG17161-RA | 739..1620 | 16..897 | 4335 | 99.4 | Plus |
grp-RB | 2234 | CG17161-RB | 410..1291 | 16..897 | 4335 | 99.4 | Plus |
grp-RC | 2344 | CG17161-RC | 520..1401 | 16..897 | 4335 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16691901..16692124 | 121..344 | 1120 | 100 | Plus |
2L | 23513712 | 2L | 16698138..16698348 | 665..875 | 995 | 98.1 | Plus |
2L | 23513712 | 2L | 16696583..16696764 | 343..524 | 910 | 100 | Plus |
2L | 23513712 | 2L | 16697499..16697643 | 521..665 | 725 | 100 | Plus |
2L | 23513712 | 2L | 16691088..16691193 | 16..121 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:10:47 has no hits.
BO17862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:25 Download gff for
BO17862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17161-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:27 Download gff for
BO17862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RC | 512..1401 | 9..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:06 Download gff for
BO17862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RC | 512..1401 | 9..898 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:06 Download gff for
BO17862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16698139..16698348 | 666..875 | 98 | -> | Plus |
2L | 16698962..16698983 | 876..898 | 91 | | Plus |
2L | 16691080..16691192 | 9..120 | 97 | -> | Plus |
2L | 16691901..16692124 | 121..344 | 100 | -> | Plus |
2L | 16696585..16696762 | 345..522 | 100 | -> | Plus |
2L | 16697501..16697643 | 523..665 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:27 Download gff for
BO17862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16691080..16691192 | 9..120 | 97 | -> | Plus |
arm_2L | 16691901..16692124 | 121..344 | 100 | -> | Plus |
arm_2L | 16696585..16696762 | 345..522 | 100 | -> | Plus |
arm_2L | 16697501..16697643 | 523..665 | 100 | -> | Plus |
arm_2L | 16698139..16698348 | 666..875 | 98 | -> | Plus |
arm_2L | 16698962..16698983 | 876..898 | 91 | | Plus |
BO17862.complete Sequence
1570 bp assembled on 2006-10-11
GenBank Submission: FJ634239
> BO17862.complete
GAAGTTATCAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTC
CTGCGGCCACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTG
GGCGAAGGTGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGG
CGAGGCTGTGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAG
CGAACTCGGTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAG
CATATCCTCCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACAT
ATTCCTGGAATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAG
ACGTGGGAATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTG
TCCGGACTCAATTACCTGCATCAGCGTGGGATCGCTCATCGGGATCTGAA
GCCGGAAAATCTGCTGCTTGACGAGCATGACAACGTGAAAATATCGGACT
TTGGCATGGCTACTATGTTTAGGTGCAAGGGCAAGGAGCGACTGCTGGAC
AAACGCTGCGGCACCTTGCCGTATGTGGCGCCCGAGGTGCTACAGAAGGC
ATATCACGCCCAGCCGGCGGATCTCTGGTCGTGTGGCGTTATATTGGTGA
CAATGCTGGCGGGTGAGCTGCCCTGGGATCAGCCGTCCACCAATTGCACG
GAGTTCACCAACTGGAGGGATAACGATCACTGGCAACTGCAGACTCCTTG
GAGCAAACTGGACACCTTGGCTATTTCGCTGCTTCGCAAGCTGCTGGCCA
CCAGTCCTGGCACGCGTTTGACCCTGGAGAAAACCCTGGATCACAAATGG
TGCAACATGCAGTTTGCAGACAATGAACGTTCCTATGACCTGGTGGACTC
GGCGGCTGCCCTGGAGATATGCTCGCCAAAGGCTAAGAGGCAGCGTCTGC
AGTCTAGTGCCCACTTGAGCAATGGCCTGGATGACTCCATCTCCCGGAAC
TACTGCTCTCAACCCATGCCCACAATGCGCAGCGACGATGACTTCAATGT
CAGACTGGGCAGTGGCCGATCCAAGGAGGATGGAGGCGACCGCCAGACGT
TGGCCCAGGAGGCTCGGCTCAGTTACTCCTTCTCGCAACCAGCTTTGCTT
GATGATCTCCTACTGGCTACCCAGATGAACCAAACGCAGAACGCTTCCCA
GAACTATTTCCAGCGTTTGGTGAGGAGAATGACCCGATTCTTTGTGACCA
CACGATGGGATGACACTATCAAGCGATTGGTGGGAACCATCGAAAGACTG
GGTGGTTATACGTGCAAATTTGGTGACGACGGAGTGGTCACCGTATCCAC
AGTCGATCGGAATAAGCTGCGATTGGTTTTCAAGGCACACATTATAGAGA
TGGATGGCAAGATTCTTGTTGACTGCCGGCTGTCAAAGGGTTGCGGCTTG
GAGTTTAAACGACGATTTATCAAGATCAAAAACGCCCTGGAGGATATCGT
GCTTAAAGGACCCACCACCTGGCCGATTGCGATTGCTACAAATTCGGTGC
CTGCAAGCTTTCTAGACCAT
BO17862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-RA | 1539 | CG17161-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
grp-RB | 1539 | CG17161-PB | 1..1536 | 17..1552 | 7680 | 100 | Plus |
grp-RC | 1539 | CG17161-PC | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-RA | 2563 | CG17161-RA | 739..2275 | 16..1552 | 7685 | 100 | Plus |
grp-RB | 2234 | CG17161-RB | 410..1946 | 16..1552 | 7685 | 100 | Plus |
grp-RC | 2344 | CG17161-RC | 520..2056 | 16..1552 | 7685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16698961..16699638 | 875..1552 | 3390 | 100 | Plus |
2L | 23513712 | 2L | 16691901..16692124 | 121..344 | 1120 | 100 | Plus |
2L | 23513712 | 2L | 16698138..16698348 | 665..875 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 16696583..16696764 | 343..524 | 910 | 100 | Plus |
2L | 23513712 | 2L | 16697499..16697643 | 521..665 | 725 | 100 | Plus |
2L | 23513712 | 2L | 16691088..16691193 | 16..121 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:26:18 has no hits.
BO17862.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:30 Download gff for
BO17862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 1..1539 | 17..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:04 Download gff for
BO17862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 944..2498 | 9..1565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:07 Download gff for
BO17862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RC | 521..2056 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:30 Download gff for
BO17862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RA | 944..2498 | 9..1565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:28 Download gff for
BO17862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grp-RC | 521..2056 | 17..1554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:28 Download gff for
BO17862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16691089..16691192 | 17..120 | 100 | -> | Plus |
2L | 16691901..16692124 | 121..344 | 100 | -> | Plus |
2L | 16696585..16696762 | 345..522 | 100 | -> | Plus |
2L | 16697501..16697643 | 523..665 | 100 | -> | Plus |
2L | 16698139..16698348 | 666..875 | 100 | -> | Plus |
2L | 16698962..16699638 | 876..1554 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:07 Download gff for
BO17862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16691089..16691192 | 17..120 | 100 | -> | Plus |
arm_2L | 16691901..16692124 | 121..344 | 100 | -> | Plus |
arm_2L | 16696585..16696762 | 345..522 | 100 | -> | Plus |
arm_2L | 16697501..16697643 | 523..665 | 100 | -> | Plus |
arm_2L | 16698139..16698348 | 666..875 | 100 | -> | Plus |
arm_2L | 16698962..16699638 | 876..1554 | 99 | | Plus |
BO17862.pep Sequence
Translation from 16 to 1570
> BO17862.pep
MAATLTEAGTGPAATREFVEGWTLAQTLGEGAYGEVKLLINRQTGEAVAM
KMVDLKKHPDAANSVRKEVCIQKMLQDKHILRFFGKRSQGSVEYIFLEYA
AGGELFDRIEPDVGMPQHEAQRYFTQLLSGLNYLHQRGIAHRDLKPENLL
LDEHDNVKISDFGMATMFRCKGKERLLDKRCGTLPYVAPEVLQKAYHAQP
ADLWSCGVILVTMLAGELPWDQPSTNCTEFTNWRDNDHWQLQTPWSKLDT
LAISLLRKLLATSPGTRLTLEKTLDHKWCNMQFADNERSYDLVDSAAALE
ICSPKAKRQRLQSSAHLSNGLDDSISRNYCSQPMPTMRSDDDFNVRLGSG
RSKEDGGDRQTLAQEARLSYSFSQPALLDDLLLATQMNQTQNASQNYFQR
LVRRMTRFFVTTRWDDTIKRLVGTIERLGGYTCKFGDDGVVTVSTVDRNK
LRLVFKAHIIEMDGKILVDCRLSKGCGLEFKRRFIKIKNALEDIVLKGPT
TWPIAIATNSVPASFLDH
BO17862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grp-PA | 512 | CG17161-PA | 1..512 | 1..512 | 2688 | 100 | Plus |
grp-PB | 512 | CG17161-PB | 1..512 | 1..512 | 2688 | 100 | Plus |
grp-PC | 512 | CG17161-PC | 1..512 | 1..512 | 2688 | 100 | Plus |
grp-PF | 398 | CG17161-PF | 1..398 | 115..512 | 2105 | 100 | Plus |
grp-PD | 398 | CG17161-PD | 1..398 | 115..512 | 2105 | 100 | Plus |