Clone BO17863 Report

Search the DGRC for BO17863

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptHP5-RA
Protein status:BO17863.pep: validated full length
Sequenced Size:1378

Clone Sequence Records

BO17863.3prime Sequence

694 bp (693 high quality bases) assembled on 2006-10-13

> BO17863.3prime
ATGGTCTAGAAAGCTTGCGTTTAATAAGTGCATCCTCCTACCTATATACT
CCTCATCGTCATCATCATTATCTCCACCTCCATCAGACCTGGAGGAGCTG
TTGTCTATGCTTAGGCGGCCCAACCTGCGTAACTTGAGCCTTCCGACCAC
AGGCGTACCGTTGCATGAGCGGCGCCTAACCCGCTCGCGCGAGCCTCCAG
AAGATGACGAGAAGAGCGGCGTGGAGGTCAGTGCTATGTCCTCCAGCACA
TTGCCAGTGGCATCCACACGCTGCAGTCGTGTCGGTTTCGGAGCTCCTCT
CGATGAAAGCGAACCGAAAGTAGACCGACGTGATGGACCCCCGGGGCTGC
CCAGAATCTCGACGGCCTCGCTGAAGGATACCGCCTTCTTGGGATACACC
TTCCTGACAACTCCGTCGCCAATGGGAGGCGGTTTGCAGTCAGGCCACTT
GGCACTTGGTAAACGCGTCCTCCTCACCTTCACCACACAGCCAAAGAAAT
GCGCGCCATAACGCTTAACCAAATCCGGATCGGTGTTGCGTCCGCGACTG
GATAATCTCTTCGCCTTGATCTTGGGCTTGGGACTTCGCTTCAGTGCGGA
GTGTGTGCTTTCAGAACTCTTGGCCAAACTGGGCGGCGGTGTATGAGCGC
GCAACGAGTGGTTCAGAGCACGCTTTTTGGCGCCATTCTGCAAA

BO17863.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1745-PA 1347 CG1745-RA 669..1344 694..19 3380 100 Minus
CG1745-PB 2514 CG1745-RB 669..1321 694..42 3265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
HP5-RA 1744 CG1745-RA 960..1635 694..19 3380 100 Minus
HP5-RC 2159 CG1745-RC 960..1613 694..41 3270 100 Minus
HP5-RB 3720 CG1745-RB 960..1612 694..42 3265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11455835..11456510 694..19 3380 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:00:55 has no hits.

BO17863.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:25 Download gff for BO17863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1745-PA 672..1347 16..691 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:53 Download gff for BO17863.3prime
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 963..1635 19..691 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:59 Download gff for BO17863.3prime
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 963..1635 19..691 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:59 Download gff for BO17863.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11455838..11456510 19..691 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:53 Download gff for BO17863.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11349871..11350543 19..691 100   Minus

BO17863.5prime Sequence

804 bp (745 high quality bases) assembled on 2006-10-13

> BO17863.5prime
GAAGTTATCAGTCGACATGGATATTTTTGATATGGTCAAAGCGGCGCCGC
CGCCGCAAACTATTAATCCGGTGGACACCAAGCTCTCCACTCCGTCGCCC
ATACCGCCCGATTCGCCAATCGACGTAAATGACCTCCTGGAGAGTGGAAA
CCAATTGGACGAGAATGACTTGCGCATGTCGAGAAAATCAAAGAATGTCG
AACAGTGCAGCATTGATCTGTTTGATTCGGAAACATCATTCGACCATCTC
GACGAGTCATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAACTCAAAACC
AAACAAAAGCAGGAAATCCACTGTCTCTGCATCGACGCCGCACAACAAGA
GGCCAAAAGTGTCCATTGACGACGACGGCGAGGCCATCGAGGAGGACCAG
CAATCGATGGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAAAAGATGTT
CAGCGATCAGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGTGCTATTAC
GTCGCCTGAAACAGACAGAAATCGATTCGGCCGTCGAATCTTTGGCCAAT
TCATCATTTATCAATGTGCCCGAGATCGTTAACCAGAGCGGTACTAGTGG
CCGTAGCAGGCACAAAAAGAGAAAAACGTCACCTAAGAAACAAAAGTCAT
CAACAGCGCAGACCAATTTCCACATCAAAGTTCCTTTGCAGAATGGCGCC
AAAAAGCGTGCTCTGAAACACTCGTTGCGCGCTCATACACCGCCGCCCAG
TTTGGCCAAGAGTTCTGAAAGCACACACTCCGCACTGAAGCGAAGTCCCA
AGCC

BO17863.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1745-PB 2514 CG1745-RB 1..788 17..804 3915 99.8 Plus
CG1745-PA 1347 CG1745-RA 1..788 17..804 3915 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
HP5-RC 2159 CG1745-RC 292..1079 17..804 3925 99.9 Plus
HP5-RA 1744 CG1745-RA 292..1079 17..804 3925 99.9 Plus
HP5-RB 3720 CG1745-RB 292..1079 17..804 3925 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11455281..11455954 131..804 3355 99.9 Plus
X 23542271 X 11455077..11455191 17..131 575 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:43:54 has no hits.

BO17863.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:26 Download gff for BO17863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1745-PA 1..788 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:20 Download gff for BO17863.5prime
Subject Subject Range Query Range Percent Splice Strand
HP5-RB 292..1079 17..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:57 Download gff for BO17863.5prime
Subject Subject Range Query Range Percent Splice Strand
HP5-RB 292..1079 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:57 Download gff for BO17863.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11455077..11455191 17..131 100 -> Plus
X 11455282..11455954 132..804 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:20 Download gff for BO17863.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11349110..11349224 17..131 100 -> Plus
arm_X 11349315..11349987 132..804 99   Plus

BO17863.complete Sequence

1378 bp assembled on 2006-10-11

GenBank Submission: FJ634240

> BO17863.complete
GAAGTTATCAGTCGACATGGATATTTTTGATATGGTCAAAGCGGCGCCGC
CGCCGCAAACTATTAATCCGGTGGACACCAAGCTCTCCACTCCGTCGCCC
ATACCGCCCGATTCGCCAATCGACGTAAATGACCTCCTGGAGAGTGGAAA
CCAATTGGACGAGAATGACTTGCGCATGTCGAGAAAATCAAAGAATGTCG
AACAGTGCAGCATTGATCTGTTTGATTCGGAAACATCATTCGACCATCTC
GACGAGTCATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAACTCAAAACC
AAACAAAAGCAGGAAATCCACTGTCTCTGCATCGACGCCGCACAACAAGA
GGCCAAAAGTGTCCATTGACGACGACGGCGAGGCCATCGAGGAGGACCAG
CAATCGATGGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAAAAGATGTT
CAGCGATCAGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGTGCTATTAC
GTCGCCTGAAACAGACAGAAATCGATTCGGCCGTCGAATCTTTGGCCAAT
TCATCATTTATCAATGTGCCCGAGATCGTTAACCAGAGCGGTACTAGTGG
CCGTAGCAGGCACAAAAAGAGAAAAACGTCACCTAAGAAACAAAAGTCAT
CAACAGCGCAGACCAATTTCCACATCAAAGTTCCTTTGCAGAATGGCGCC
AAAAAGCGTGCTCTGAACCACTCGTTGCGCGCTCATACACCGCCGCCCAG
TTTGGCCAAGAGTTCTGAAAGCACACACTCCGCACTGAAGCGAAGTCCCA
AGCCCAAGATCAAGGCGAAGAGATTATCCAGTCGCGGACGCAACACCGAT
CCGGATTTGGTTAAGCGTTATGGCGCGCATTTCTTTGGCTGTGTGGTGAA
GGTGAGGAGGACGCGTTTACCAAGTGCCAAGTGGCCTGACTGCAAACCGC
CTCCCATTGGCGACGGAGTTGTCAGGAAGGTGTATCCCAAGAAGGCGGTA
TCCTTCAGCGAGGCCGTCGAGATTCTGGGCAGCCCCGGGGGTCCATCACG
TCGGTCTACTTTCGGTTCGCTTTCATCGAGAGGAGCTCCGAAACCGACAC
GACTGCAGCGTGTGGATGCCACTGGCAATGTGCTGGAGGACATAGCACTG
ACCTCCACGCCGCTCTTCTCGTCATCTTCTGGAGGCTCGCGCGAGCGGGT
TAGGCGCCGCTCATGCAACGGTACGCCTGTGGTCGGAAGGCTCAAGTTAC
GCAGGTTGGGCCGCCTAAGCATAGACAACAGCTCCTCCAGGTCTGATGGA
GGTGGAGATAATGATGATGACGATGAGGAGTATATAGGTAGGAGGATGCA
CTTATTAAACGCAAGCTTTCTAGACCAT

BO17863.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
HP5-RA 1347 CG1745-PA 1..1344 17..1360 6720 100 Plus
HP5-RC 1353 CG1745-PC 1..1322 17..1338 6610 100 Plus
HP5-RB 2514 CG1745-PB 1..1321 17..1337 6605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
HP5-RA 1744 CG1745-RA 292..1635 17..1360 6720 100 Plus
HP5-RC 2159 CG1745-RC 292..1613 17..1338 6610 100 Plus
HP5-RB 3720 CG1745-RB 292..1612 17..1337 6605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11455281..11456510 131..1360 6150 100 Plus
X 23542271 X 11455077..11455191 17..131 575 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:04:34 has no hits.

BO17863.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:31 Download gff for BO17863.complete
Subject Subject Range Query Range Percent Splice Strand
CG1745-RA 1..1347 17..1363 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:05 Download gff for BO17863.complete
Subject Subject Range Query Range Percent Splice Strand
CG1745-RA 275..1618 17..1360 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:13:10 Download gff for BO17863.complete
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 292..1635 17..1362 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:31 Download gff for BO17863.complete
Subject Subject Range Query Range Percent Splice Strand
CG1745-RA 275..1618 17..1360 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:12 Download gff for BO17863.complete
Subject Subject Range Query Range Percent Splice Strand
HP5-RA 292..1635 17..1362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:12 Download gff for BO17863.complete
Subject Subject Range Query Range Percent Splice Strand
X 11455077..11455191 17..131 100 -> Plus
X 11455282..11456510 132..1362 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:13:10 Download gff for BO17863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11349110..11349224 17..131 100 -> Plus
arm_X 11349315..11350543 132..1362 99   Plus

BO17863.pep Sequence

Translation from 16 to 1378

> BO17863.pep
MDIFDMVKAAPPPQTINPVDTKLSTPSPIPPDSPIDVNDLLESGNQLDEN
DLRMSRKSKNVEQCSIDLFDSETSFDHLDESLAKRKRKSVANSKPNKSRK
STVSASTPHNKRPKVSIDDDGEAIEEDQQSMVVVPTKTKAQQKMFSDQQS
PNVKRKVRVLLRRLKQTEIDSAVESLANSSFINVPEIVNQSGTSGRSRHK
KRKTSPKKQKSSTAQTNFHIKVPLQNGAKKRALNHSLRAHTPPPSLAKSS
ESTHSALKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHFFGCVVKVRRTR
LPSAKWPDCKPPPIGDGVVRKVYPKKAVSFSEAVEILGSPGGPSRRSTFG
SLSSRGAPKPTRLQRVDATGNVLEDIALTSTPLFSSSSGGSRERVRRRSC
NGTPVVGRLKLRRLGRLSIDNSSSRSDGGGDNDDDDEEYIGRRMHLLNAS
FLDH

BO17863.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
HP5-PA 448 CG1745-PA 1..448 1..448 2290 100 Plus
HP5-PC 450 CG1745-PC 1..441 1..441 2253 100 Plus
HP5-PB 837 CG1745-PB 1..440 1..440 2247 100 Plus