Clone Sequence Records
BO17863.3prime Sequence
694 bp (693 high quality bases) assembled on 2006-10-13
> BO17863.3prime
ATGGTCTAGAAAGCTTGCGTTTAATAAGTGCATCCTCCTACCTATATACT
CCTCATCGTCATCATCATTATCTCCACCTCCATCAGACCTGGAGGAGCTG
TTGTCTATGCTTAGGCGGCCCAACCTGCGTAACTTGAGCCTTCCGACCAC
AGGCGTACCGTTGCATGAGCGGCGCCTAACCCGCTCGCGCGAGCCTCCAG
AAGATGACGAGAAGAGCGGCGTGGAGGTCAGTGCTATGTCCTCCAGCACA
TTGCCAGTGGCATCCACACGCTGCAGTCGTGTCGGTTTCGGAGCTCCTCT
CGATGAAAGCGAACCGAAAGTAGACCGACGTGATGGACCCCCGGGGCTGC
CCAGAATCTCGACGGCCTCGCTGAAGGATACCGCCTTCTTGGGATACACC
TTCCTGACAACTCCGTCGCCAATGGGAGGCGGTTTGCAGTCAGGCCACTT
GGCACTTGGTAAACGCGTCCTCCTCACCTTCACCACACAGCCAAAGAAAT
GCGCGCCATAACGCTTAACCAAATCCGGATCGGTGTTGCGTCCGCGACTG
GATAATCTCTTCGCCTTGATCTTGGGCTTGGGACTTCGCTTCAGTGCGGA
GTGTGTGCTTTCAGAACTCTTGGCCAAACTGGGCGGCGGTGTATGAGCGC
GCAACGAGTGGTTCAGAGCACGCTTTTTGGCGCCATTCTGCAAA
BO17863.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1745-PA | 1347 | CG1745-RA | 669..1344 | 694..19 | 3380 | 100 | Minus |
CG1745-PB | 2514 | CG1745-RB | 669..1321 | 694..42 | 3265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP5-RA | 1744 | CG1745-RA | 960..1635 | 694..19 | 3380 | 100 | Minus |
HP5-RC | 2159 | CG1745-RC | 960..1613 | 694..41 | 3270 | 100 | Minus |
HP5-RB | 3720 | CG1745-RB | 960..1612 | 694..42 | 3265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11455835..11456510 | 694..19 | 3380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:00:55 has no hits.
BO17863.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:25 Download gff for
BO17863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1745-PA | 672..1347 | 16..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:53 Download gff for
BO17863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP5-RA | 963..1635 | 19..691 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:59 Download gff for
BO17863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP5-RA | 963..1635 | 19..691 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:59 Download gff for
BO17863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11455838..11456510 | 19..691 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:53 Download gff for
BO17863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11349871..11350543 | 19..691 | 100 | | Minus |
BO17863.5prime Sequence
804 bp (745 high quality bases) assembled on 2006-10-13
> BO17863.5prime
GAAGTTATCAGTCGACATGGATATTTTTGATATGGTCAAAGCGGCGCCGC
CGCCGCAAACTATTAATCCGGTGGACACCAAGCTCTCCACTCCGTCGCCC
ATACCGCCCGATTCGCCAATCGACGTAAATGACCTCCTGGAGAGTGGAAA
CCAATTGGACGAGAATGACTTGCGCATGTCGAGAAAATCAAAGAATGTCG
AACAGTGCAGCATTGATCTGTTTGATTCGGAAACATCATTCGACCATCTC
GACGAGTCATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAACTCAAAACC
AAACAAAAGCAGGAAATCCACTGTCTCTGCATCGACGCCGCACAACAAGA
GGCCAAAAGTGTCCATTGACGACGACGGCGAGGCCATCGAGGAGGACCAG
CAATCGATGGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAAAAGATGTT
CAGCGATCAGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGTGCTATTAC
GTCGCCTGAAACAGACAGAAATCGATTCGGCCGTCGAATCTTTGGCCAAT
TCATCATTTATCAATGTGCCCGAGATCGTTAACCAGAGCGGTACTAGTGG
CCGTAGCAGGCACAAAAAGAGAAAAACGTCACCTAAGAAACAAAAGTCAT
CAACAGCGCAGACCAATTTCCACATCAAAGTTCCTTTGCAGAATGGCGCC
AAAAAGCGTGCTCTGAAACACTCGTTGCGCGCTCATACACCGCCGCCCAG
TTTGGCCAAGAGTTCTGAAAGCACACACTCCGCACTGAAGCGAAGTCCCA
AGCC
BO17863.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1745-PB | 2514 | CG1745-RB | 1..788 | 17..804 | 3915 | 99.8 | Plus |
CG1745-PA | 1347 | CG1745-RA | 1..788 | 17..804 | 3915 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP5-RC | 2159 | CG1745-RC | 292..1079 | 17..804 | 3925 | 99.9 | Plus |
HP5-RA | 1744 | CG1745-RA | 292..1079 | 17..804 | 3925 | 99.9 | Plus |
HP5-RB | 3720 | CG1745-RB | 292..1079 | 17..804 | 3925 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11455281..11455954 | 131..804 | 3355 | 99.9 | Plus |
X | 23542271 | X | 11455077..11455191 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:43:54 has no hits.
BO17863.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:26 Download gff for
BO17863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1745-PA | 1..788 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:20 Download gff for
BO17863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP5-RB | 292..1079 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:57 Download gff for
BO17863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP5-RB | 292..1079 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:57 Download gff for
BO17863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11455077..11455191 | 17..131 | 100 | -> | Plus |
X | 11455282..11455954 | 132..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:20 Download gff for
BO17863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11349110..11349224 | 17..131 | 100 | -> | Plus |
arm_X | 11349315..11349987 | 132..804 | 99 | | Plus |
BO17863.complete Sequence
1378 bp assembled on 2006-10-11
GenBank Submission: FJ634240
> BO17863.complete
GAAGTTATCAGTCGACATGGATATTTTTGATATGGTCAAAGCGGCGCCGC
CGCCGCAAACTATTAATCCGGTGGACACCAAGCTCTCCACTCCGTCGCCC
ATACCGCCCGATTCGCCAATCGACGTAAATGACCTCCTGGAGAGTGGAAA
CCAATTGGACGAGAATGACTTGCGCATGTCGAGAAAATCAAAGAATGTCG
AACAGTGCAGCATTGATCTGTTTGATTCGGAAACATCATTCGACCATCTC
GACGAGTCATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAACTCAAAACC
AAACAAAAGCAGGAAATCCACTGTCTCTGCATCGACGCCGCACAACAAGA
GGCCAAAAGTGTCCATTGACGACGACGGCGAGGCCATCGAGGAGGACCAG
CAATCGATGGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAAAAGATGTT
CAGCGATCAGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGTGCTATTAC
GTCGCCTGAAACAGACAGAAATCGATTCGGCCGTCGAATCTTTGGCCAAT
TCATCATTTATCAATGTGCCCGAGATCGTTAACCAGAGCGGTACTAGTGG
CCGTAGCAGGCACAAAAAGAGAAAAACGTCACCTAAGAAACAAAAGTCAT
CAACAGCGCAGACCAATTTCCACATCAAAGTTCCTTTGCAGAATGGCGCC
AAAAAGCGTGCTCTGAACCACTCGTTGCGCGCTCATACACCGCCGCCCAG
TTTGGCCAAGAGTTCTGAAAGCACACACTCCGCACTGAAGCGAAGTCCCA
AGCCCAAGATCAAGGCGAAGAGATTATCCAGTCGCGGACGCAACACCGAT
CCGGATTTGGTTAAGCGTTATGGCGCGCATTTCTTTGGCTGTGTGGTGAA
GGTGAGGAGGACGCGTTTACCAAGTGCCAAGTGGCCTGACTGCAAACCGC
CTCCCATTGGCGACGGAGTTGTCAGGAAGGTGTATCCCAAGAAGGCGGTA
TCCTTCAGCGAGGCCGTCGAGATTCTGGGCAGCCCCGGGGGTCCATCACG
TCGGTCTACTTTCGGTTCGCTTTCATCGAGAGGAGCTCCGAAACCGACAC
GACTGCAGCGTGTGGATGCCACTGGCAATGTGCTGGAGGACATAGCACTG
ACCTCCACGCCGCTCTTCTCGTCATCTTCTGGAGGCTCGCGCGAGCGGGT
TAGGCGCCGCTCATGCAACGGTACGCCTGTGGTCGGAAGGCTCAAGTTAC
GCAGGTTGGGCCGCCTAAGCATAGACAACAGCTCCTCCAGGTCTGATGGA
GGTGGAGATAATGATGATGACGATGAGGAGTATATAGGTAGGAGGATGCA
CTTATTAAACGCAAGCTTTCTAGACCAT
BO17863.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP5-RA | 1347 | CG1745-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
HP5-RC | 1353 | CG1745-PC | 1..1322 | 17..1338 | 6610 | 100 | Plus |
HP5-RB | 2514 | CG1745-PB | 1..1321 | 17..1337 | 6605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP5-RA | 1744 | CG1745-RA | 292..1635 | 17..1360 | 6720 | 100 | Plus |
HP5-RC | 2159 | CG1745-RC | 292..1613 | 17..1338 | 6610 | 100 | Plus |
HP5-RB | 3720 | CG1745-RB | 292..1612 | 17..1337 | 6605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11455281..11456510 | 131..1360 | 6150 | 100 | Plus |
X | 23542271 | X | 11455077..11455191 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:04:34 has no hits.
BO17863.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:31 Download gff for
BO17863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1745-RA | 1..1347 | 17..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:05 Download gff for
BO17863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1745-RA | 275..1618 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:13:10 Download gff for
BO17863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP5-RA | 292..1635 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:31 Download gff for
BO17863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1745-RA | 275..1618 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:12 Download gff for
BO17863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP5-RA | 292..1635 | 17..1362 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:12 Download gff for
BO17863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11455077..11455191 | 17..131 | 100 | -> | Plus |
X | 11455282..11456510 | 132..1362 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:13:10 Download gff for
BO17863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11349110..11349224 | 17..131 | 100 | -> | Plus |
arm_X | 11349315..11350543 | 132..1362 | 99 | | Plus |
BO17863.pep Sequence
Translation from 16 to 1378
> BO17863.pep
MDIFDMVKAAPPPQTINPVDTKLSTPSPIPPDSPIDVNDLLESGNQLDEN
DLRMSRKSKNVEQCSIDLFDSETSFDHLDESLAKRKRKSVANSKPNKSRK
STVSASTPHNKRPKVSIDDDGEAIEEDQQSMVVVPTKTKAQQKMFSDQQS
PNVKRKVRVLLRRLKQTEIDSAVESLANSSFINVPEIVNQSGTSGRSRHK
KRKTSPKKQKSSTAQTNFHIKVPLQNGAKKRALNHSLRAHTPPPSLAKSS
ESTHSALKRSPKPKIKAKRLSSRGRNTDPDLVKRYGAHFFGCVVKVRRTR
LPSAKWPDCKPPPIGDGVVRKVYPKKAVSFSEAVEILGSPGGPSRRSTFG
SLSSRGAPKPTRLQRVDATGNVLEDIALTSTPLFSSSSGGSRERVRRRSC
NGTPVVGRLKLRRLGRLSIDNSSSRSDGGGDNDDDDEEYIGRRMHLLNAS
FLDH
BO17863.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP5-PA | 448 | CG1745-PA | 1..448 | 1..448 | 2290 | 100 | Plus |
HP5-PC | 450 | CG1745-PC | 1..441 | 1..441 | 2253 | 100 | Plus |
HP5-PB | 837 | CG1745-PB | 1..440 | 1..440 | 2247 | 100 | Plus |