Clone Sequence Records
BO17866.3prime Sequence
660 bp (537 high quality bases) assembled on 2006-10-13
> BO17866.3prime
ATGGTCTAGAAAGCTTGCGCTCAGCTCGTTGCCCTCGTACAGGCTCTCGC
AGCTCTCGAGCAGGCGCAGCACGGGGGAAATGTCGTAGGGGTAGAGCTGG
CGCGACACGAGGCGGGATATCTGCAGGCGCAGCCGGATAAGAACGCCCAT
CGCCTCGTCTAGCATGGCGCTGCCCATGCCGAAGGTGTGACAGCTGTGCA
CGAACATCGTCCAGTTCATGCGGATGTACTTGAGCAGGCGCAGCAGGTAG
AGCAGGAAGCAGGTCTCGTTGCTCACCAGCAGGTCCAGCAGCAGGTCCGA
GCTGTTCGATGTCATCTTGAGGAACTCCAGGAATGTGTACACCGGATTCA
GCATGGCCACCAGCTCGGGGAAGGCGTTGTTGCGGAACGATATCCCAGAC
GTGACGTCCAGCGTGCAGACCATGGCCTCGATCAAGTGGTCGTCCTGGTC
GTCGAACAGGTGGATCAGGATCTTGCTGAAGTGGCACTCCGGATGGAATT
CCAGCGTCTGCTTTATGAACGTCTCCAGCTTGCTGAGTACTTCGCGGATC
GAGCGCTCAATGAGCATCATGTCCTGGAAGGCATCGTAGTCGGTGGAATC
GATGGATGAGTCGGAGGAATCGCTGCGTATCTCCTTCCCCGTCACCGCTA
TCCAATTCAG
BO17866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11770-PA | 2577 | lin-RA | 1941..2574 | 652..19 | 3120 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-RA | 3654 | CG11770-RA | 2453..3094 | 660..19 | 3150 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8917033..8917674 | 660..19 | 3150 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:03:44 has no hits.
BO17866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:28 Download gff for
BO17866.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11770-PA | 1933..2577 | 16..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:47:16 Download gff for
BO17866.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 2453..3098 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:19 Download gff for
BO17866.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 2453..3098 | 15..660 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:19 Download gff for
BO17866.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8917033..8917678 | 15..660 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:47:16 Download gff for
BO17866.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4804538..4805183 | 15..660 | 99 | | Minus |
BO17866.5prime Sequence
626 bp (622 high quality bases) assembled on 2006-10-13
> BO17866.5prime
GAAGTTATCAGTCGACATGGACACCTCATCCGCAGCAGGATCTGGAGCCG
GAACGGGCGATGTGTGCCCATGCTCCACGGTAGCAACCTCCACGACCTCC
GCATCAAACGAACAGCCGCAGACCAAGCGCCAGAAGATCGAGCAGCAAAT
CAAGGTGGGCTCCAAGGCGCTGCCACCCCAGCCGCCCCATCCGCCGGATA
TACTGGACCTGGACGCCAACAGCAACAGCCACCTGTGCTCCTCGCTCTCC
TCGTCCTCTTCGCACTCGCTGTCAACGCCAAGCACCGCCAACAACTCCCC
CACCACCACGCCCTGTAGTTCCCGGGCGGCGTCGTACGCCCAGCTGCTGC
ACAACATCTTGCCACAAAACGGGGACACAGACCTGCACAGCCAGCCTGAA
TCCGCCCATGACGAAGTGGACAGGGCGGCCAAATTGCCCAACCTGCTAAC
CCTCGACACGACCAACGGCAATGGCAGTCATGCTAGCAGCAGGAGCAATT
GCTTGCAAGCAACAACAGCCACGTCCATCGACGATATGCTGGAGTTCGAG
CAGTCCCTGACCCGCCAGTGCCTGTGCGGCGTCTCGAAGCGAACGCTGCG
CAAGCCCTTCCAGTCGCATTACTCCC
BO17866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11770-PA | 2577 | lin-RA | 1..608 | 17..624 | 3015 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-RA | 3654 | CG11770-RA | 521..1128 | 17..624 | 3025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8915101..8915708 | 17..624 | 3025 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:44:50 has no hits.
BO17866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:29 Download gff for
BO17866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11770-PA | 1..610 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:24:42 Download gff for
BO17866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 518..1130 | 10..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:30 Download gff for
BO17866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 518..1130 | 10..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:30 Download gff for
BO17866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8915098..8915710 | 10..626 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:24:42 Download gff for
BO17866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4802603..4803215 | 10..626 | 99 | | Plus |
BO17866.complete Sequence
2608 bp assembled on 2010-05-05
GenBank Submission: KX794005
> BO17866.complete
GAAGTTATCAGTCGACATGGACACCTCATCCGCAGCAGGATCTGGAGCCG
GAACGGGCGATGTGTGCCCATGCTCCACGGTAGCAACCTCCACGACCTCC
GCATCAAACGAACAGCCGCAGACCAAGCGCCAGAAGATCGAGCAGCAAAT
CAAGGTGGGCTCCAAGGCGCTGCCACCCCAGCCGCCCCATCCGCCGGATA
TACTGGACCTGGACGCCAACAGCAACAGCCACCTGTGCTCCTCGCTCTCC
TCGTCCTCTTCGCACTCGCTGTCAACGCCAAGCACCGCCAACAACTCCCC
CACCACCACGCCCTGTAGTTCCCGGGCGGCGTCGTACGCCCAGCTGCTGC
ACAACATCTTGCCACAAAACGGGGACACAGACCTGCACAGCCAGCCTGAA
TCCGCCCATGACGAAGTGGACAGGGCGGCCAAATTGCCCAACCTGCTAAC
CCTCGACACGACCAACGGCAATGGCAGTCATGCTAGCAGCAGGAGCAATT
GCTTGCAAGCAACAACAGCCACGTCCATCGACGATATGCTGGAGTTCGAG
CAGTCCCTGACCCGCCAGTGCCTGTGCGGCGTCTCGGAGCGAACGCTGCG
CAAGCCCTTCCAGTCGCATTACTCACAGGACACCAACGGCCAGAAACGGA
TAGCCTACCTGCGGGAGTGGCCCACCAACAAGCTGCTGCAGTTTCTGTCG
AATCTGCAGCTACTGTTCGATATCTACCTGAAGCAGAACGCAAAGGGCTT
CATCTGCACGCGGATAATGGACGTTTGCGACGCACTCATTCGCAATGACC
ACAAGCTTATCGACGAGATTATCGTGCTGGCCGGCTACGAGAACTCTTAC
GTGCAATTTCTGGCGGGACGTGTGCTAGCCGCATTCCTGGTGATTGCCAA
GCAAGAGCTGAATGACGAGTGGCTGCAGAAGATCGTCGACCAGCTATTTA
ACTTCGAGCAGCTTGACCAGGCGGCCGTGCAGAAGATCCACTTCAGCCTG
GACATCATCAAGCGCATAGTGGAGTGGAAGGATATGGAGATCCATCCGCT
GGACGACGACTGGATGGCGTCGGCGAATAGTACAAGTGCAGCCTCGTCAG
TAGTGCCCCTTTCGACAGAGGCGTCCGTGAGCTACATGCATTTTCCCGTG
CAGGAGCAGCCGCTAGCCACCAATTATTTTGCACTGCAATTTCGCGAGGA
TACGGAAGGTGAACGAGAGACGGGGCAGGAAGCACCTGACAACCGCGACC
GACATCGGCGGCACTTTGGCGAGGATATGAACGTCGCCTACGAGCCGCAC
CCCGCTCCCCAGTCCACGACCATGCCCAGCGGTTGCCATGTGGTCACACT
AACCGACTCGGAAAGCTTCGATACGACGCACCTGAAGTGCATCACCATTC
AAAAGCTGGAGCACAAGTGGCCCACGCTGGTGAAGAACATGTCGGAGTTG
ATGGCGCCGACGCATCAGGATGCGGCCGAGCACTGTGTGCTCAACTTCTT
GCAGCTATGGGAAAACATCATCTCGGTGAAGGCCAATCTGTCCATCGACG
AGACGCGACCCTACTACGCCCAGCTGGACAAGTTTGAGCTGCTGCTCAGC
CACAGCCTCTCCTGCACCGTGTACAAGCAGATGCTGTGCCTCTTCAACGA
GGCATTGTGCTATGGTTCCACGCTGGCGCTGCAGGACATGCTGCCCGAGG
AGACGTGCAAGCTGGCTCACCAGATAGTCTGCCATGTGCGCGGCTTCCGC
ATACTGGAGTCGTTGCCGCGGCGACAGCCGGACAACATGGTCAGTCTGAT
CGGCTACAATGGCAAGCCGATGGTGTACGCCAATGGAACAATTACCCTGG
CACATGCCGCGCAATCAGGGGACAGCGAAGAGGACGGTGCGCCACTGGAC
CTTATCGAAATGGATAAGACACTGTTGCAGAAGATGGTGCTGTTGGTGCT
GAAGTCGATAGCGGTGACGGTGAAGGAGATACGCAGCGATTCCTCCGACT
CATCCATCGATTCCACCGACTACGATGCCTTCCAGGACATGATGCTCATT
GAGCGCTCGATCCGCGATGTACTCAGCAAGCTGGAGACGTTCATAAAGCA
GACGCTGGAATTCCATCCGGAGTGCCACTTCAGCAAGATCCTGATCCACC
TGTTCGACGACCAGGACGACCACTTGATCGAGGCCATGGTCTGCACGCTG
GACGTCACGTCTGGGATATCGTTCCGCAACAACGCCTTCCCCGAGCTGGT
GGCCATGCTGAATCCGGTGTACACATTCCTGGAGTTCCTCAAGATGACAT
CGAACAGCTCGGACCTGCTGCTGGACCTGCTGGTGAGCAACGAGACCTGC
TTCCTGCTCTACCTGCTGCGCCTGCTCAAGTACATCCGCATGAACTGGAC
GATGTTCGTGCACAGCTGTCACACCTTCGGCATGGGCAGCGCCATGCTAG
ACGAGGCGATGGGCGTTCTTATCCGGCTGCGCCTGCAGATATCCCGCCTC
GTGTCGCGCCAGCTCTACCCCTACGACATTTCCCCCGTGCTGCGCCTGCT
CGAGAGCTGCGAGAGCCTGTACGAGGGCAACGAGCTGAGCGCAAGCTTTC
TAGACCAT
BO17866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-RA | 2577 | CG11770-PA | 1..2574 | 17..2590 | 12870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-RA | 3654 | CG11770-RA | 521..3094 | 17..2590 | 12870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8915101..8917674 | 17..2590 | 12870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:30:57 has no hits.
BO17866.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:09 Download gff for
BO17866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 517..3090 | 17..2592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:16 Download gff for
BO17866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 521..3094 | 17..2592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:51 Download gff for
BO17866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-RA | 521..3094 | 17..2592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:51 Download gff for
BO17866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8915101..8917674 | 17..2592 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:16 Download gff for
BO17866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4802606..4805179 | 17..2592 | 99 | | Plus |
BO17866.pep Sequence
Translation from 16 to 2608
> BO17866.pep
MDTSSAAGSGAGTGDVCPCSTVATSTTSASNEQPQTKRQKIEQQIKVGSK
ALPPQPPHPPDILDLDANSNSHLCSSLSSSSSHSLSTPSTANNSPTTTPC
SSRAASYAQLLHNILPQNGDTDLHSQPESAHDEVDRAAKLPNLLTLDTTN
GNGSHASSRSNCLQATTATSIDDMLEFEQSLTRQCLCGVSERTLRKPFQS
HYSQDTNGQKRIAYLREWPTNKLLQFLSNLQLLFDIYLKQNAKGFICTRI
MDVCDALIRNDHKLIDEIIVLAGYENSYVQFLAGRVLAAFLVIAKQELND
EWLQKIVDQLFNFEQLDQAAVQKIHFSLDIIKRIVEWKDMEIHPLDDDWM
ASANSTSAASSVVPLSTEASVSYMHFPVQEQPLATNYFALQFREDTEGER
ETGQEAPDNRDRHRRHFGEDMNVAYEPHPAPQSTTMPSGCHVVTLTDSES
FDTTHLKCITIQKLEHKWPTLVKNMSELMAPTHQDAAEHCVLNFLQLWEN
IISVKANLSIDETRPYYAQLDKFELLLSHSLSCTVYKQMLCLFNEALCYG
STLALQDMLPEETCKLAHQIVCHVRGFRILESLPRRQPDNMVSLIGYNGK
PMVYANGTITLAHAAQSGDSEEDGAPLDLIEMDKTLLQKMVLLVLKSIAV
TVKEIRSDSSDSSIDSTDYDAFQDMMLIERSIRDVLSKLETFIKQTLEFH
PECHFSKILIHLFDDQDDHLIEAMVCTLDVTSGISFRNNAFPELVAMLNP
VYTFLEFLKMTSNSSDLLLDLLVSNETCFLLYLLRLLKYIRMNWTMFVHS
CHTFGMGSAMLDEAMGVLIRLRLQISRLVSRQLYPYDISPVLRLLESCES
LYEGNELSASFLDH
BO17866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-PA | 858 | CG11770-PA | 1..858 | 1..858 | 4449 | 100 | Plus |
