Clone Sequence Records
BO17868.3prime Sequence
730 bp (624 high quality bases) assembled on 2006-10-13
> BO17868.3prime
ATGGTCTAGAAAGCTTGCACCCTCCTCCAGGTGTCGACGGTGCTGCATTT
GGAGTTCAAAACGTCGGTTGAGGCGCACTCCGCGGATAAACTCTCCTTTC
TCCTTCTGGTCCTTGGTTGTTCTACCCTTGAACATGTCAATGCGCCGCTG
GCGTCGCTCAGCCAGCTTGTTGTCGTGCGAATCGGCCGGTCTGCTGGAAA
ACGTGGCGTTGAATGTCTTCACCGTGGAGGTGGACAAATTGAAAGCTGGC
TTTGGAGCTACATTAGAAGCGGGAGCGGTGGCCTTCAAAGGCAAACGTGA
TGAGTTCAGCTTATCGGACGGATGATCCATTACCACGGTCCGATCGGCGG
ACATGTCGATCTTCTTCATTGCCCTTGGACGAGCACGATCCTCCACAGAC
GTGGTGCTCTGCATTTTCTTCGCCGCCGATCCTGGCACTTGCTTCTGTAC
AGAATTGGTTAGCACCTTGGCGCGTTCCGCCTTCCGTTCGACGTGGTCCA
CCAGACTCTCCATCTTGGCAAACTGTCTCTCATGCATGGCAGCAAAATTG
GGCATCTTGGTGCGCTTATTCACCTTGCTGGGTGTGATGGTTTTGTTTAG
CGGTATAACACCTCTATTGGGCTTGGGGATCCTGCTCCTCTTGCAGCGTT
TTTCGTCCCATGACTTTGAGCGCCTACGCCGGGTATTGACATTGGTCTTT
TGAAGTCCTGCCCAGCGCTTATCAATGTCT
BO17868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11120-PA | 2265 | CG11120-RA | 1551..2260 | 730..21 | 3475 | 99.5 | Minus |
| CG11120-PB | 2181 | CG11120-RB | 1467..2176 | 730..21 | 3475 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mink-RA | 2511 | CG11120-RA | 1650..2359 | 730..21 | 3505 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24924416..24925008 | 613..21 | 2965 | 100 | Minus |
| 3R | 32079331 | 3R | 24924276..24924358 | 692..610 | 370 | 96.4 | Minus |
| 3R | 32079331 | 3R | 24924186..24924223 | 730..693 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:06:07 has no hits.
BO17868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:30 Download gff for
BO17868.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11120-PB | 1467..2181 | 18..730 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:29 Download gff for
BO17868.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11120-RA | 1650..2359 | 21..730 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:14 Download gff for
BO17868.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mink-RA | 1650..2359 | 21..730 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:14 Download gff for
BO17868.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24924186..24924223 | 693..730 | 100 | -> | Minus |
| 3R | 24924276..24924356 | 612..692 | 96 | -> | Minus |
| 3R | 24924418..24925008 | 21..611 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:29 Download gff for
BO17868.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20749908..20749945 | 693..730 | 100 | -> | Minus |
| arm_3R | 20749998..20750078 | 612..692 | 96 | -> | Minus |
| arm_3R | 20750140..20750730 | 21..611 | 100 | | Minus |
BO17868.5prime Sequence
737 bp (636 high quality bases) assembled on 2006-10-13
> BO17868.5prime
GAAGTTATCAGTCGACATGGAACTTAATATTGATAATCGCCCAAACGATG
TCGGCGTCTTGGCGCCGAACGATCAGGAAAATGAGGACGCCAATCGGAGG
ATGGAAAATACAGACGCTGTTAAGACTCCAGTGGCCAGGAAAACGCGACG
AGCGGTCCTCAAGCGGATGAATGCCACTTCGGAAAAGAATTCGCCCACGC
ATCCCGATCCTCCGAAGACACCGGGCACTCCAGGCCATCTTAGCCAAAAC
ACCGAAACTCCGAGACGTAGTTGCCGGAAAAGTGTGCGTCCAGCGATCGA
TTACGATGACATTATAGTGCGATCCGCCAAGAAGGCTATCGTCGAAGCAC
TTTCAGCCGATCCCGAGGGCGAGGAGCCTTCCGTCCAGAAGTGGACCACC
GCGGAGGTGGGAAAAAATTCGCGCAAACGGGGTCGCAAGTCCAAGCGCAT
GGTCGCCAAGAAGCAGAAAACAGAGCACATAGTTGCAGAGGATGATGAGG
AGCAGGACACGGAGTTGGAGGTCCCACAGAAAAAGGTGGATCCTTCTCAG
GATGCTGAAGGAAATGCAGAGGTTCAAGCAGACATAGTAGAGGAAGTGGC
ACTATCCACGAAGAAGTCTTCTAAAAAGTCTAAAACTAAAGATCCAGATC
ACGCAAATGATATTACGGACATTGTAGTGAATCTGGAGCAACCCATATCG
ATAAAAAAGTCTTCTAGGGCGTCTAAAAATCCAGACA
BO17868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11120-PA | 2265 | CG11120-RA | 1..721 | 17..737 | 3555 | 99.7 | Plus |
| CG11120-PB | 2181 | CG11120-RB | 1..637 | 101..737 | 3135 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mink-RA | 2511 | CG11120-RA | 100..820 | 17..737 | 3575 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24922651..24923356 | 32..737 | 3500 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:08:29 has no hits.
BO17868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:31 Download gff for
BO17868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11120-PA | 1..720 | 17..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:32:45 Download gff for
BO17868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11120-RA | 91..819 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:28:50 Download gff for
BO17868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mink-RA | 91..819 | 9..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:28:50 Download gff for
BO17868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24922652..24923355 | 33..736 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:32:45 Download gff for
BO17868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20748374..20749077 | 33..736 | 99 | | Plus |
BO17868.complete Sequence
2296 bp assembled on 2008-08-14
GenBank Submission: FJ634241
> BO17868.complete
GAAGTTATCAGTCGACATGGAACTTAATATTGATAATCGCCCAAACGATG
TCGGCGTCTTGGCGCCGAACGATCAGGAAAATGAGGACGCCAATCGGAGG
ATGGAAAATACAGACGCTGTTAAGACTCCAGTGGCCAGGAAAACGCGACG
AGCGGTCCTCAAGCGGATGAATGCCACTTCGGAAAAGAATTCGCCCACGC
ATCCCGATCCTCCGAAGACACCGGGCACTCCAGGCCATCTTAGCCAAAAC
ACCGAAACTCCGAGACGTAGTTGCCGGAAAAGTGTGCGTCCAGCGATCGA
TTACGATGACATTATAGTGCGATCCGCCAAGAAGGCTATCGTCGAAGCAC
TTTCAGCCGATCCCGAGGGCGAGGAGCCTTCCGTCCAGAAGTGGACCACC
GCGGAGGTGGGAAAAAATTCGCGCAAACGGGGTCGCAAGTCCAAGCGCAT
GGTCGCCAAGAAGCAGAAAACAGAGCACATAGTTGCAGAGGATGATGAGG
AGCAGGACACGGAGTTGGAGGTCCCACAGAAAAAGGTGGATCCTTCTCAG
GATGCTGAAGGAAATGCAGAGGTTCAAGCAGACATAGTAGAGGAAGTGGC
ACTATCCACGAAGAAGTCTTCTAAAAAGTCTAAAACTAAAGATCCAGATC
ACGCAAATGATATTACGGACATTGTAGTGAATCTGGAGCAACCAATATCG
ATAAAGAAGTCTTCTAGGGCGTCTAAAAATCCAGACACCAAGGAGCAAAA
TGTAGCTGATGAACTAGGTTTATGCCCACTGGATATGGACAGCCAGGAAG
AAGATGAGAAGGATATTCAAGGTGGAGAAGCAAAAACAAACGCAGAGGTA
TTTGAAGATGAAGCCCAAACGAGTGCAGCCGATACGGATGGTCAGAAACA
TGAAGAGAAAGATGAGCAAGCAGATGAAGCAACTAAACCAGCTGCGCTTG
ATAAAGACAAAGAAGTAACAGCTGAAGATAAACTAAAAGAAGCTAGTGCA
GTAGATGAGCAAGCAGAGGAAGAAATGCCCTCACTACTGATGGAAAGTGA
TGGCCTGGATGAACCAAATCAGTCGCCTCTCAATACCACATACGATGCAG
AAGACAAGAAAGATTTTGATGGAAGTGTTATTCTGGTTGTTAGTCCCGAC
AAGCAGCCAAAGGCTAGCTCCTCCGACCTCGATGCAAGTGTTATTCTGGT
CGGCATTACCGATATGCAGCCTGTTGTTTGCGCTCCGAAGCCGGAAATTC
CGGAGGAGAAGCCGGTTATTAAAGTTGTGCTCACCACATCAGATGATCAG
GACCAAACCCTTTTAGATTTACCCGCTGAAGCTTCGCCAAATGTATCAAA
GTCGAAGAAATCGAAGGGCTATCGATTCCCTACGCCCTATAAGGCAAGGC
CTATGTTTAACTTTACAGGAACAGAGGAGGCAGTTCATCATGATCACGAA
GTTAAAGAAGATGAACCGCATTACACACGCAAACGTTCCAAGTCAGCCAG
CAATTGGAAAGATATCATGTCACGAACTGTATCCTTTCAGAGTCCTATTG
AGGTTGCCAATGTCGAAGACATTGATAAGCGCTGGGCAGGACTTCAAAAG
ACCAATGTCAATAACCGGCGTAGGCGCTCAAAGTCATTGGACGAAAAACG
CTGCAAGATGAGCAGGATCCCCAAGCCCAATAGAGGTGTTATACCGCTAA
ACAAAACCATCACACCCAGCAAGGTGAATAAGCGCACCAAGATGCCCAAT
TTTGCTGCCATGCATGAGAGACAGTTTGCCAAGATGGAGAGTCTGGTGGA
CCACGTCGAACGGAAGGCGGAACGCGCCAAGGTGCTAACCAATTCTGTAC
AGAAGCAAGTGCCAGGATCGGCGGCGAAGAAAATGCAGAGCACCACGTCT
GTGGAGGATCGTGCTCGTCCAAGGGCAATGAAGAAGATCGACATGTCCGC
CGATCGGACCGTGGTAATGGATCATCCGTCCGATAAGCTGAACTCATCAC
GTTTGCCTTTGAAGGCCACCGCTCCCGCTTCTAATGTAGCTCCAAAGCCA
GCTTTCAATTTGTCCACCTCCACGGTGAAGACATTCAACGCCACGTTTTC
CAGCAGACCGGCCGATTCGCACGACAACAAGCTGGCTGAGCGACGCCAGC
GGCGCATTGACATGTTCAAGGGTAGAACAACCAAGGACCAGAAGGAGAAA
GGAGAGTTTATCCGCGGAGTGCGCCTCAACCGACGTTTTGAACTCCAAAT
GCAGCACCGTCGACACCTGGAGGAGGATGCAAGCTTTCTAGACCAT
BO17868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mink-RA | 2265 | CG11120-PA | 1..2262 | 17..2278 | 11310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mink-RA | 2511 | CG11120-RA | 100..2361 | 17..2278 | 11310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24922651..24924223 | 32..1604 | 7865 | 100 | Plus |
| 3R | 32079331 | 3R | 24924416..24925010 | 1684..2278 | 2975 | 100 | Plus |
| 3R | 32079331 | 3R | 24924276..24924358 | 1605..1687 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:46:35 has no hits.
BO17868.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:42 Download gff for
BO17868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11120-RA | 118..2396 | 9..2289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:48 Download gff for
BO17868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11120-RA | 100..2361 | 17..2280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:58 Download gff for
BO17868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11120-RA | 127..2388 | 17..2280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:01 Download gff for
BO17868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mink-RA | 100..2361 | 17..2280 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:01 Download gff for
BO17868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24922572..24922587 | 17..32 | 100 | -> | Plus |
| 3R | 24922652..24924223 | 33..1604 | 100 | -> | Plus |
| 3R | 24924276..24924356 | 1605..1685 | 100 | -> | Plus |
| 3R | 24924418..24925010 | 1686..2280 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:48 Download gff for
BO17868.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20748294..20748309 | 17..32 | 100 | -> | Plus |
| arm_3R | 20748374..20749945 | 33..1604 | 100 | -> | Plus |
| arm_3R | 20749998..20750078 | 1605..1685 | 100 | -> | Plus |
| arm_3R | 20750140..20750732 | 1686..2280 | 99 | | Plus |
BO17868.pep Sequence
Translation from 16 to 2296
> BO17868.pep
MELNIDNRPNDVGVLAPNDQENEDANRRMENTDAVKTPVARKTRRAVLKR
MNATSEKNSPTHPDPPKTPGTPGHLSQNTETPRRSCRKSVRPAIDYDDII
VRSAKKAIVEALSADPEGEEPSVQKWTTAEVGKNSRKRGRKSKRMVAKKQ
KTEHIVAEDDEEQDTELEVPQKKVDPSQDAEGNAEVQADIVEEVALSTKK
SSKKSKTKDPDHANDITDIVVNLEQPISIKKSSRASKNPDTKEQNVADEL
GLCPLDMDSQEEDEKDIQGGEAKTNAEVFEDEAQTSAADTDGQKHEEKDE
QADEATKPAALDKDKEVTAEDKLKEASAVDEQAEEEMPSLLMESDGLDEP
NQSPLNTTYDAEDKKDFDGSVILVVSPDKQPKASSSDLDASVILVGITDM
QPVVCAPKPEIPEEKPVIKVVLTTSDDQDQTLLDLPAEASPNVSKSKKSK
GYRFPTPYKARPMFNFTGTEEAVHHDHEVKEDEPHYTRKRSKSASNWKDI
MSRTVSFQSPIEVANVEDIDKRWAGLQKTNVNNRRRRSKSLDEKRCKMSR
IPKPNRGVIPLNKTITPSKVNKRTKMPNFAAMHERQFAKMESLVDHVERK
AERAKVLTNSVQKQVPGSAAKKMQSTTSVEDRARPRAMKKIDMSADRTVV
MDHPSDKLNSSRLPLKATAPASNVAPKPAFNLSTSTVKTFNATFSSRPAD
SHDNKLAERRQRRIDMFKGRTTKDQKEKGEFIRGVRLNRRFELQMQHRRH
LEEDASFLDH
BO17868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mink-PA | 754 | CG11120-PA | 1..754 | 1..754 | 3858 | 100 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4132..4795 | 8..688 | 178 | 20.3 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4171..4834 | 8..688 | 178 | 20.3 | Plus |
| Strn-Mlck-PS | 8216 | CG44162-PS | 4132..4795 | 8..688 | 178 | 20.3 | Plus |
| Strn-Mlck-PU | 8255 | CG44162-PU | 4171..4834 | 8..688 | 178 | 20.3 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3703..4297 | 97..712 | 176 | 20 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3742..4336 | 97..712 | 176 | 20 | Plus |
| Strn-Mlck-PS | 8216 | CG44162-PS | 3703..4297 | 97..712 | 176 | 20 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3477..4102 | 133..712 | 174 | 20.3 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3516..4141 | 133..712 | 174 | 20.3 | Plus |
| Strn-Mlck-PS | 8216 | CG44162-PS | 3477..4102 | 133..712 | 174 | 20.3 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4613..5203 | 97..728 | 165 | 19.7 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4652..5242 | 97..728 | 165 | 19.7 | Plus |
| Strn-Mlck-PS | 8216 | CG44162-PS | 4613..5203 | 97..728 | 165 | 19.7 | Plus |
