Clone BO17870 Report

Search the DGRC for BO17870

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptspt4-RA
Protein status:BO17870.pep: validated full length
Sequenced Size:382

Clone Sequence Records

BO17870.5prime Sequence

380 bp (380 high quality bases) assembled on 2006-10-13

> BO17870.5prime
GAAGTTATCAGTCGACATGGCCTTTGACGCGATACCCAAGGATCTGCGAG
GACTTCGCGCCTGCCTCGTTTGCTCCCTAGTGAAGAGTTTTGATCAATTT
GAGACTGATGGCTGTGAAAACTGCGAGGAGTTCCTGCGAATGAAAAACAA
CAAGGACAATGTCTATGATCACACTAGCAACAACTTTGACGGAATTATTG
CCCTAACTACGCCCACCGACTCCTGGGTGGCCAAGTGGCAAAGATTGTCC
CGCTTTACTCGTGGTATCTATGCCATTTCTGTATCCGGAACACTGCCGCA
GTCTACCTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGG
ACAGAAGTCAACGAGCAAGCTTTCTAGACC

BO17870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12372-PA 351 spt4-RA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-RA 457 CG12372-RA 89..436 17..364 1740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12633805..12633969 84..248 825 100 Plus
2R 25286936 2R 12634036..12634151 249..364 580 100 Plus
2R 25286936 2R 12633677..12633745 17..85 345 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:03:36 has no hits.

BO17870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:33 Download gff for BO17870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12372-PA 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:10 Download gff for BO17870.5prime
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 79..439 7..368 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:54 Download gff for BO17870.5prime
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 79..439 7..368 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:54 Download gff for BO17870.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12633667..12633745 7..85 94 -> Plus
2R 12633807..12633969 86..248 100 -> Plus
2R 12634036..12634154 249..368 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:10 Download gff for BO17870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8521541..8521659 249..368 98   Plus
arm_2R 8521172..8521250 7..85 94 -> Plus
arm_2R 8521312..8521474 86..248 100 -> Plus

BO17870.3prime Sequence

380 bp (380 high quality bases) assembled on 2006-10-13

> BO17870.3prime
ATGGTCTAGAAAGCTTGCTCGTTGACTTCTGTCCCGAGATTTGTAGACAA
TTCCACGATTCTTCATGTCACGTAAGGTAGACTGCGGCAGTGTTCCGGAT
ACAGAAATGGCATAGATACCACGAGTAAAGCGGGACAATCTTTGCCACTT
GGCCACCCAGGAGTCGGTGGGCGTAGTTAGGGCAATAATTCCGTCAAAGT
TGTTGCTAGTGTGATCATAGACATTGTCCTTGTTGTTTTTCATTCGCAGG
AACTCCTCGCAGTTTTCACAGCCATCAGTCTCAAATTGATCAAAACTCTT
CACTAGGGAGCAAACGAGGCAGGCGCGAAGTCCTCGCAGATCCTTGGGTA
TCGCGTCAAAGGCCATGTCGACTGATAACT

BO17870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12372-PA 351 spt4-RA 1..348 366..19 1740 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-RA 457 CG12372-RA 89..436 366..19 1740 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12633805..12633969 299..135 825 100 Minus
2R 25286936 2R 12634036..12634151 134..19 580 100 Minus
2R 25286936 2R 12633677..12633745 366..298 345 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:10:34 has no hits.

BO17870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:32 Download gff for BO17870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12372-PA 1..351 15..366 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:49 Download gff for BO17870.3prime
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 79..439 15..376 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:18 Download gff for BO17870.3prime
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 79..439 15..376 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:18 Download gff for BO17870.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12633667..12633745 298..376 94 -> Minus
2R 12633807..12633969 135..297 100 -> Minus
2R 12634036..12634154 15..134 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:49 Download gff for BO17870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8521172..8521250 298..376 94 -> Minus
arm_2R 8521312..8521474 135..297 100 -> Minus
arm_2R 8521541..8521659 15..134 98   Minus

BO17870.complete Sequence

382 bp assembled on 2006-10-11

GenBank Submission: FJ634242

> BO17870.complete
GAAGTTATCAGTCGACATGGCCTTTGACGCGATACCCAAGGATCTGCGAG
GACTTCGCGCCTGCCTCGTTTGCTCCCTAGTGAAGAGTTTTGATCAATTT
GAGACTGATGGCTGTGAAAACTGCGAGGAGTTCCTGCGAATGAAAAACAA
CAAGGACAATGTCTATGATCACACTAGCAACAACTTTGACGGAATTATTG
CCCTAACTACGCCCACCGACTCCTGGGTGGCCAAGTGGCAAAGATTGTCC
CGCTTTACTCGTGGTATCTATGCCATTTCTGTATCCGGAACACTGCCGCA
GTCTACCTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGG
ACAGAAGTCAACGAGCAAGCTTTCTAGACCAT

BO17870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-RA 351 CG12372-PA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-RA 457 CG12372-RA 89..436 17..364 1740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12633805..12633969 84..248 825 100 Plus
2R 25286936 2R 12634036..12634151 249..364 580 100 Plus
2R 25286936 2R 12633677..12633745 17..85 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:14:31 has no hits.

BO17870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:32 Download gff for BO17870.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:08 Download gff for BO17870.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 51..411 7..368 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:13 Download gff for BO17870.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 89..436 17..366 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:32 Download gff for BO17870.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 51..411 7..368 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:55 Download gff for BO17870.complete
Subject Subject Range Query Range Percent Splice Strand
spt4-RA 89..436 17..366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:55 Download gff for BO17870.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12633807..12633969 86..248 100 -> Plus
2R 12634036..12634151 249..366 98   Plus
2R 12633677..12633745 17..85 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:13 Download gff for BO17870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8521182..8521250 17..85 100 -> Plus
arm_2R 8521312..8521474 86..248 100 -> Plus
arm_2R 8521541..8521656 249..366 98   Plus

BO17870.pep Sequence

Translation from 16 to 382

> BO17870.pep
MAFDAIPKDLRGLRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVY
DHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQSTLRD
MKNRGIVYKSRDRSQRASFLDH

BO17870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
spt4-PA 116 CG12372-PA 1..116 1..116 615 100 Plus