Clone Sequence Records
BO17870.5prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO17870.5prime
GAAGTTATCAGTCGACATGGCCTTTGACGCGATACCCAAGGATCTGCGAG
GACTTCGCGCCTGCCTCGTTTGCTCCCTAGTGAAGAGTTTTGATCAATTT
GAGACTGATGGCTGTGAAAACTGCGAGGAGTTCCTGCGAATGAAAAACAA
CAAGGACAATGTCTATGATCACACTAGCAACAACTTTGACGGAATTATTG
CCCTAACTACGCCCACCGACTCCTGGGTGGCCAAGTGGCAAAGATTGTCC
CGCTTTACTCGTGGTATCTATGCCATTTCTGTATCCGGAACACTGCCGCA
GTCTACCTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGG
ACAGAAGTCAACGAGCAAGCTTTCTAGACC
BO17870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12372-PA | 351 | spt4-RA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-RA | 457 | CG12372-RA | 89..436 | 17..364 | 1740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12633805..12633969 | 84..248 | 825 | 100 | Plus |
2R | 25286936 | 2R | 12634036..12634151 | 249..364 | 580 | 100 | Plus |
2R | 25286936 | 2R | 12633677..12633745 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:03:36 has no hits.
BO17870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:33 Download gff for
BO17870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12372-PA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:10 Download gff for
BO17870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 79..439 | 7..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:54 Download gff for
BO17870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 79..439 | 7..368 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:54 Download gff for
BO17870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12633667..12633745 | 7..85 | 94 | -> | Plus |
2R | 12633807..12633969 | 86..248 | 100 | -> | Plus |
2R | 12634036..12634154 | 249..368 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:10 Download gff for
BO17870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8521541..8521659 | 249..368 | 98 | | Plus |
arm_2R | 8521172..8521250 | 7..85 | 94 | -> | Plus |
arm_2R | 8521312..8521474 | 86..248 | 100 | -> | Plus |
BO17870.3prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO17870.3prime
ATGGTCTAGAAAGCTTGCTCGTTGACTTCTGTCCCGAGATTTGTAGACAA
TTCCACGATTCTTCATGTCACGTAAGGTAGACTGCGGCAGTGTTCCGGAT
ACAGAAATGGCATAGATACCACGAGTAAAGCGGGACAATCTTTGCCACTT
GGCCACCCAGGAGTCGGTGGGCGTAGTTAGGGCAATAATTCCGTCAAAGT
TGTTGCTAGTGTGATCATAGACATTGTCCTTGTTGTTTTTCATTCGCAGG
AACTCCTCGCAGTTTTCACAGCCATCAGTCTCAAATTGATCAAAACTCTT
CACTAGGGAGCAAACGAGGCAGGCGCGAAGTCCTCGCAGATCCTTGGGTA
TCGCGTCAAAGGCCATGTCGACTGATAACT
BO17870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12372-PA | 351 | spt4-RA | 1..348 | 366..19 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-RA | 457 | CG12372-RA | 89..436 | 366..19 | 1740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12633805..12633969 | 299..135 | 825 | 100 | Minus |
2R | 25286936 | 2R | 12634036..12634151 | 134..19 | 580 | 100 | Minus |
2R | 25286936 | 2R | 12633677..12633745 | 366..298 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:10:34 has no hits.
BO17870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:32 Download gff for
BO17870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12372-PA | 1..351 | 15..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:49 Download gff for
BO17870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 79..439 | 15..376 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:18 Download gff for
BO17870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 79..439 | 15..376 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:18 Download gff for
BO17870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12633667..12633745 | 298..376 | 94 | -> | Minus |
2R | 12633807..12633969 | 135..297 | 100 | -> | Minus |
2R | 12634036..12634154 | 15..134 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:49 Download gff for
BO17870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8521172..8521250 | 298..376 | 94 | -> | Minus |
arm_2R | 8521312..8521474 | 135..297 | 100 | -> | Minus |
arm_2R | 8521541..8521659 | 15..134 | 98 | | Minus |
BO17870.complete Sequence
382 bp assembled on 2006-10-11
GenBank Submission: FJ634242
> BO17870.complete
GAAGTTATCAGTCGACATGGCCTTTGACGCGATACCCAAGGATCTGCGAG
GACTTCGCGCCTGCCTCGTTTGCTCCCTAGTGAAGAGTTTTGATCAATTT
GAGACTGATGGCTGTGAAAACTGCGAGGAGTTCCTGCGAATGAAAAACAA
CAAGGACAATGTCTATGATCACACTAGCAACAACTTTGACGGAATTATTG
CCCTAACTACGCCCACCGACTCCTGGGTGGCCAAGTGGCAAAGATTGTCC
CGCTTTACTCGTGGTATCTATGCCATTTCTGTATCCGGAACACTGCCGCA
GTCTACCTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGG
ACAGAAGTCAACGAGCAAGCTTTCTAGACCAT
BO17870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-RA | 351 | CG12372-PA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-RA | 457 | CG12372-RA | 89..436 | 17..364 | 1740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12633805..12633969 | 84..248 | 825 | 100 | Plus |
2R | 25286936 | 2R | 12634036..12634151 | 249..364 | 580 | 100 | Plus |
2R | 25286936 | 2R | 12633677..12633745 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:14:31 has no hits.
BO17870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:32 Download gff for
BO17870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:08 Download gff for
BO17870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 51..411 | 7..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:13 Download gff for
BO17870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 89..436 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:32 Download gff for
BO17870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 51..411 | 7..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:55 Download gff for
BO17870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spt4-RA | 89..436 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:55 Download gff for
BO17870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12633807..12633969 | 86..248 | 100 | -> | Plus |
2R | 12634036..12634151 | 249..366 | 98 | | Plus |
2R | 12633677..12633745 | 17..85 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:13 Download gff for
BO17870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8521182..8521250 | 17..85 | 100 | -> | Plus |
arm_2R | 8521312..8521474 | 86..248 | 100 | -> | Plus |
arm_2R | 8521541..8521656 | 249..366 | 98 | | Plus |
BO17870.pep Sequence
Translation from 16 to 382
> BO17870.pep
MAFDAIPKDLRGLRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVY
DHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQSTLRD
MKNRGIVYKSRDRSQRASFLDH
BO17870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spt4-PA | 116 | CG12372-PA | 1..116 | 1..116 | 615 | 100 | Plus |