Clone Sequence Records
BO17875.3prime Sequence
860 bp (720 high quality bases) assembled on 2006-10-13
> BO17875.3prime
ATGGTCTAGAAAGCTTGCCTCGATAAAGTTGAAGCGAGTGAGCAGCTTGT
GGTAGAACCACCGCACCACCTGCTGGACTCGTCCGGCCAGCCAGGCGCAA
AGGCTGCTGGTGTGGCGCACCATCGACGCGTAGTGCTTGATGTGATCTAA
TAAAGTCCAGGGTGGATGGCCGCCGTTAATGTAGTTCACATAGGTGAATC
CGTCCTTGCCCTTGCCCCGTATATTGTAGTAGTAGGGCAGGAATGAGTGA
AGCGTAAATCTTCTCTTCTCGTAGAAAAATATGGCAGGTTGATTGGTGGT
CAGCGTGTGCAGGAAGATCGCCTTCACCGAATGCCGCTCGGCCGTCGTCA
GGTGGTTCATTAGCGCGTCCAACAGCAGCGATCCGATGCCATTGCGTCGA
TGCGAACGATGGACGCCCAGCGACAGTATATAACCGACATCGGCGGAACG
ACCCATCGAGTCCGGCAGGATGCCCTTGTCCTGCATGGGAAAACCGCTCA
GCCTGGTGTACAACTCATCACTATCACTCATATTGGCTATTACCTCCTTG
TTCACATTTCGATAGGGTTTGATTTCGGCAACGATTAAACCAATTATGGC
CAGATTATATACAGCTGCCAGCGCAAAGAAGCGCGTGCTTGAGGTAATAT
CCTCATACCATGATAGTGGATAGTCGATTGGAAACCATTCTTGGCACAGC
TGTCGCACCTCCGTCAGATCGTCGGGCACCAGGAACCTTAGCTGCACATC
GTTAATCGAGCACAGCGGTACGTGTTCGCAGTCCACACGCGTACTCTCGC
TACTGGGCGGCGCACTGTGTTTGTTGTAGAGTGTGAATTGTGCCATGTCG
ACTGATAACT
BO17875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18177-PA | 831 | CG18177-RA | 1..828 | 846..19 | 4140 | 100 | Minus |
CG18177-PB | 768 | CG18177-RB | 302..765 | 482..19 | 2320 | 100 | Minus |
CG18177-PB | 768 | CG18177-RB | 1..304 | 846..543 | 1520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RA | 2294 | CG18177-RA | 659..1486 | 846..19 | 4140 | 100 | Minus |
Naa60-RB | 2231 | CG18177-RB | 960..1423 | 482..19 | 2320 | 100 | Minus |
Naa60-RC | 1378 | CG18177-RC | 960..1298 | 482..144 | 1680 | 99.7 | Minus |
Naa60-RB | 2231 | CG18177-RB | 659..962 | 846..543 | 1520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9727983..9728433 | 710..260 | 2255 | 100 | Minus |
3L | 28110227 | 3L | 9728713..9728842 | 148..19 | 650 | 100 | Minus |
3L | 28110227 | 3L | 9727787..9727909 | 829..707 | 615 | 100 | Minus |
3L | 28110227 | 3L | 9728502..9728619 | 261..144 | 575 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:28:16 has no hits.
BO17875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:36 Download gff for
BO17875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-PA | 1..831 | 16..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:47 Download gff for
BO17875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 652..1493 | 12..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:09 Download gff for
BO17875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 652..1493 | 12..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:09 Download gff for
BO17875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9727787..9727907 | 709..829 | 100 | -> | Minus |
3L | 9727985..9728433 | 260..708 | 100 | -> | Minus |
3L | 9728504..9728616 | 147..259 | 99 | -> | Minus |
3L | 9728715..9728849 | 12..146 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:47 Download gff for
BO17875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9720887..9721007 | 709..829 | 100 | -> | Minus |
arm_3L | 9721085..9721533 | 260..708 | 100 | -> | Minus |
arm_3L | 9721604..9721716 | 147..259 | 99 | -> | Minus |
arm_3L | 9721815..9721949 | 12..146 | 97 | | Minus |
BO17875.5prime Sequence
860 bp (769 high quality bases) assembled on 2006-10-13
> BO17875.5prime
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGTAATAGCCAATATGAGTGATAGTGATGAGT
TGTACACCAGGCTGAGCGGTTTTCCCATGCAGGACAAGGGCATCCTGCCG
GACTCGATGGGTCGTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGT
CCATCGTTCGCATCGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGC
TAATGAACCACCTGACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTC
CTGCACACGCTGACCACCAATCAACCTGCCATATTTTTCTACGAGAAGAG
AAGATTTACGCTTCACTCATTCCTGCCCTACTACTACAATATACGGGGCA
AGGGCAAGGACGGATTCACCTATGTGAACTACATTAACGGCGGCCATCCA
CCCTGGACTTTATTAGATCACATCAAGCACTACGCGTCGATGGTGCGCCA
CACCAGCAGCCTTTGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGC
GGTGGTTCTACCACAAGCTGCTCACTCGCTTTCACTTTATCGAGGCAAGC
TTTCTAGACC
BO17875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18177-PA | 831 | CG18177-RA | 1..828 | 17..844 | 4090 | 99.7 | Plus |
CG18177-PB | 768 | CG18177-RB | 302..765 | 381..844 | 2270 | 99.5 | Plus |
CG18177-PB | 768 | CG18177-RB | 1..304 | 17..320 | 1520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RA | 2294 | CG18177-RA | 659..1486 | 17..844 | 4110 | 99.8 | Plus |
Naa60-RB | 2231 | CG18177-RB | 960..1423 | 381..844 | 2290 | 99.6 | Plus |
Naa60-RC | 1378 | CG18177-RC | 960..1298 | 381..719 | 1680 | 99.7 | Plus |
Naa60-RB | 2231 | CG18177-RB | 659..962 | 17..320 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9727983..9728433 | 153..603 | 2255 | 100 | Plus |
3L | 28110227 | 3L | 9728713..9728842 | 715..844 | 620 | 98.5 | Plus |
3L | 28110227 | 3L | 9727787..9727909 | 34..156 | 615 | 100 | Plus |
3L | 28110227 | 3L | 9728502..9728619 | 602..719 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:08 has no hits.
BO17875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:36 Download gff for
BO17875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:45 Download gff for
BO17875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 652..1493 | 9..851 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:26 Download gff for
BO17875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 652..1493 | 9..851 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:26 Download gff for
BO17875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9727787..9727907 | 34..154 | 100 | -> | Plus |
3L | 9727985..9728433 | 155..603 | 100 | -> | Plus |
3L | 9728504..9728616 | 604..716 | 99 | -> | Plus |
3L | 9728715..9728849 | 717..851 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:45 Download gff for
BO17875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9720887..9721007 | 34..154 | 100 | -> | Plus |
arm_3L | 9721085..9721533 | 155..603 | 100 | -> | Plus |
arm_3L | 9721604..9721716 | 604..716 | 99 | -> | Plus |
arm_3L | 9721815..9721949 | 717..851 | 96 | | Plus |
BO17875.complete Sequence
862 bp assembled on 2006-10-11
GenBank Submission: FJ634243
> BO17875.complete
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGTAATAGCCAATATGAGTGATAGTGATGAGT
TGTACACCAGGCTGAGCGGTTTTCCCATGCAGGACAAGGGCATCCTGCCG
GACTCGATGGGTCGTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGT
CCATCGTTCGCATCGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGC
TAATGAACCACCTGACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTC
CTGCACACGCTGACCACCAATCAACCTGCCATATTTTTCTACGAGAAGAG
AAGATTTACGCTTCACTCATTCCTGCCCTACTACTACAATATACGGGGCA
AGGGCAAGGACGGATTCACCTATGTGAACTACATTAACGGCGGCCATCCA
CCCTGGACTTTATTAGATCACATCAAGCACTACGCGTCGATGGTGCGCCA
CACCAGCAGCCTTTGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGC
GGTGGTTCTACCACAAGCTGCTCACTCGCTTCAACTTTATCGAGGCAAGC
TTTCTAGACCAT
BO17875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RA | 831 | CG18177-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Naa60-RB | 768 | CG18177-PB | 302..765 | 381..844 | 2320 | 100 | Plus |
Naa60-RC | 720 | CG18177-PC | 302..640 | 381..719 | 1680 | 99.7 | Plus |
Naa60-RB | 768 | CG18177-PB | 1..304 | 17..320 | 1520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-RA | 2294 | CG18177-RA | 659..1486 | 17..844 | 4140 | 100 | Plus |
Naa60-RB | 2231 | CG18177-RB | 960..1423 | 381..844 | 2320 | 100 | Plus |
Naa60-RC | 1378 | CG18177-RC | 960..1298 | 381..719 | 1680 | 99.7 | Plus |
Naa60-RB | 2231 | CG18177-RB | 659..962 | 17..320 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9727983..9728433 | 153..603 | 2255 | 100 | Plus |
3L | 28110227 | 3L | 9728713..9728842 | 715..844 | 650 | 100 | Plus |
3L | 28110227 | 3L | 9727787..9727909 | 34..156 | 615 | 100 | Plus |
3L | 28110227 | 3L | 9728502..9728619 | 602..719 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:41:15 has no hits.
BO17875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:32 Download gff for
BO17875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:07 Download gff for
BO17875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RA | 617..1458 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:43 Download gff for
BO17875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 659..1486 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:32 Download gff for
BO17875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18177-RA | 617..1458 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:20 Download gff for
BO17875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naa60-RA | 659..1486 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:20 Download gff for
BO17875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9727985..9728433 | 155..603 | 100 | -> | Plus |
3L | 9728504..9728616 | 604..716 | 99 | -> | Plus |
3L | 9727553..9727569 | 17..33 | 100 | -> | Plus |
3L | 9727787..9727907 | 34..154 | 100 | -> | Plus |
3L | 9728715..9728842 | 717..846 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:43 Download gff for
BO17875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9720653..9720669 | 17..33 | 100 | -> | Plus |
arm_3L | 9720887..9721007 | 34..154 | 100 | -> | Plus |
arm_3L | 9721815..9721942 | 717..846 | 98 | | Plus |
arm_3L | 9721085..9721533 | 155..603 | 100 | -> | Plus |
arm_3L | 9721604..9721716 | 604..716 | 99 | -> | Plus |
BO17875.pep Sequence
Translation from 16 to 862
> BO17875.pep
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EVIANMSDSDELYTRLSGFPMQDKGILPDSMGRSADVGYILSLGVHRSHR
RNGIGSLLLDALMNHLTTAERHSVKAIFLHTLTTNQPAIFFYEKRRFTLH
SFLPYYYNIRGKGKDGFTYVNYINGGHPPWTLLDHIKHYASMVRHTSSLC
AWLAGRVQQVVRWFYHKLLTRFNFIEASFLDH
BO17875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naa60-PA | 276 | CG18177-PA | 1..276 | 1..276 | 1476 | 100 | Plus |
Naa60-PB | 255 | CG18177-PB | 1..255 | 1..276 | 1338 | 92.4 | Plus |
Naa60-PC | 239 | CG18177-PC | 1..218 | 1..239 | 1102 | 89.1 | Plus |