Clone BO17875 Report

Search the DGRC for BO17875

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG18177-RA
Protein status:BO17875.pep: validated full length
Sequenced Size:862

Clone Sequence Records

BO17875.3prime Sequence

860 bp (720 high quality bases) assembled on 2006-10-13

> BO17875.3prime
ATGGTCTAGAAAGCTTGCCTCGATAAAGTTGAAGCGAGTGAGCAGCTTGT
GGTAGAACCACCGCACCACCTGCTGGACTCGTCCGGCCAGCCAGGCGCAA
AGGCTGCTGGTGTGGCGCACCATCGACGCGTAGTGCTTGATGTGATCTAA
TAAAGTCCAGGGTGGATGGCCGCCGTTAATGTAGTTCACATAGGTGAATC
CGTCCTTGCCCTTGCCCCGTATATTGTAGTAGTAGGGCAGGAATGAGTGA
AGCGTAAATCTTCTCTTCTCGTAGAAAAATATGGCAGGTTGATTGGTGGT
CAGCGTGTGCAGGAAGATCGCCTTCACCGAATGCCGCTCGGCCGTCGTCA
GGTGGTTCATTAGCGCGTCCAACAGCAGCGATCCGATGCCATTGCGTCGA
TGCGAACGATGGACGCCCAGCGACAGTATATAACCGACATCGGCGGAACG
ACCCATCGAGTCCGGCAGGATGCCCTTGTCCTGCATGGGAAAACCGCTCA
GCCTGGTGTACAACTCATCACTATCACTCATATTGGCTATTACCTCCTTG
TTCACATTTCGATAGGGTTTGATTTCGGCAACGATTAAACCAATTATGGC
CAGATTATATACAGCTGCCAGCGCAAAGAAGCGCGTGCTTGAGGTAATAT
CCTCATACCATGATAGTGGATAGTCGATTGGAAACCATTCTTGGCACAGC
TGTCGCACCTCCGTCAGATCGTCGGGCACCAGGAACCTTAGCTGCACATC
GTTAATCGAGCACAGCGGTACGTGTTCGCAGTCCACACGCGTACTCTCGC
TACTGGGCGGCGCACTGTGTTTGTTGTAGAGTGTGAATTGTGCCATGTCG
ACTGATAACT

BO17875.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG18177-PA 831 CG18177-RA 1..828 846..19 4140 100 Minus
CG18177-PB 768 CG18177-RB 302..765 482..19 2320 100 Minus
CG18177-PB 768 CG18177-RB 1..304 846..543 1520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RA 2294 CG18177-RA 659..1486 846..19 4140 100 Minus
Naa60-RB 2231 CG18177-RB 960..1423 482..19 2320 100 Minus
Naa60-RC 1378 CG18177-RC 960..1298 482..144 1680 99.7 Minus
Naa60-RB 2231 CG18177-RB 659..962 846..543 1520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9727983..9728433 710..260 2255 100 Minus
3L 28110227 3L 9728713..9728842 148..19 650 100 Minus
3L 28110227 3L 9727787..9727909 829..707 615 100 Minus
3L 28110227 3L 9728502..9728619 261..144 575 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 16:28:16 has no hits.

BO17875.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:36 Download gff for BO17875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18177-PA 1..831 16..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:47 Download gff for BO17875.3prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 652..1493 12..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:09 Download gff for BO17875.3prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 652..1493 12..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:09 Download gff for BO17875.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9727787..9727907 709..829 100 -> Minus
3L 9727985..9728433 260..708 100 -> Minus
3L 9728504..9728616 147..259 99 -> Minus
3L 9728715..9728849 12..146 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:47 Download gff for BO17875.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9720887..9721007 709..829 100 -> Minus
arm_3L 9721085..9721533 260..708 100 -> Minus
arm_3L 9721604..9721716 147..259 99 -> Minus
arm_3L 9721815..9721949 12..146 97   Minus

BO17875.5prime Sequence

860 bp (769 high quality bases) assembled on 2006-10-13

> BO17875.5prime
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGTAATAGCCAATATGAGTGATAGTGATGAGT
TGTACACCAGGCTGAGCGGTTTTCCCATGCAGGACAAGGGCATCCTGCCG
GACTCGATGGGTCGTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGT
CCATCGTTCGCATCGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGC
TAATGAACCACCTGACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTC
CTGCACACGCTGACCACCAATCAACCTGCCATATTTTTCTACGAGAAGAG
AAGATTTACGCTTCACTCATTCCTGCCCTACTACTACAATATACGGGGCA
AGGGCAAGGACGGATTCACCTATGTGAACTACATTAACGGCGGCCATCCA
CCCTGGACTTTATTAGATCACATCAAGCACTACGCGTCGATGGTGCGCCA
CACCAGCAGCCTTTGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGC
GGTGGTTCTACCACAAGCTGCTCACTCGCTTTCACTTTATCGAGGCAAGC
TTTCTAGACC

BO17875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18177-PA 831 CG18177-RA 1..828 17..844 4090 99.7 Plus
CG18177-PB 768 CG18177-RB 302..765 381..844 2270 99.5 Plus
CG18177-PB 768 CG18177-RB 1..304 17..320 1520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RA 2294 CG18177-RA 659..1486 17..844 4110 99.8 Plus
Naa60-RB 2231 CG18177-RB 960..1423 381..844 2290 99.6 Plus
Naa60-RC 1378 CG18177-RC 960..1298 381..719 1680 99.7 Plus
Naa60-RB 2231 CG18177-RB 659..962 17..320 1520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9727983..9728433 153..603 2255 100 Plus
3L 28110227 3L 9728713..9728842 715..844 620 98.5 Plus
3L 28110227 3L 9727787..9727909 34..156 615 100 Plus
3L 28110227 3L 9728502..9728619 602..719 575 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 20:57:08 has no hits.

BO17875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:36 Download gff for BO17875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18177-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:45 Download gff for BO17875.5prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 652..1493 9..851 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:26 Download gff for BO17875.5prime
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 652..1493 9..851 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:26 Download gff for BO17875.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9727787..9727907 34..154 100 -> Plus
3L 9727985..9728433 155..603 100 -> Plus
3L 9728504..9728616 604..716 99 -> Plus
3L 9728715..9728849 717..851 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:45 Download gff for BO17875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9720887..9721007 34..154 100 -> Plus
arm_3L 9721085..9721533 155..603 100 -> Plus
arm_3L 9721604..9721716 604..716 99 -> Plus
arm_3L 9721815..9721949 717..851 96   Plus

BO17875.complete Sequence

862 bp assembled on 2006-10-11

GenBank Submission: FJ634243

> BO17875.complete
GAAGTTATCAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTG
CGCCGCCCAGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTG
TGCTCGATTAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGAC
GGAGGTGCGACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTAT
CATGGTATGAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCT
GTATATAATCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTA
TCGAAATGTGAACAAGGAGGTAATAGCCAATATGAGTGATAGTGATGAGT
TGTACACCAGGCTGAGCGGTTTTCCCATGCAGGACAAGGGCATCCTGCCG
GACTCGATGGGTCGTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGT
CCATCGTTCGCATCGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGC
TAATGAACCACCTGACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTC
CTGCACACGCTGACCACCAATCAACCTGCCATATTTTTCTACGAGAAGAG
AAGATTTACGCTTCACTCATTCCTGCCCTACTACTACAATATACGGGGCA
AGGGCAAGGACGGATTCACCTATGTGAACTACATTAACGGCGGCCATCCA
CCCTGGACTTTATTAGATCACATCAAGCACTACGCGTCGATGGTGCGCCA
CACCAGCAGCCTTTGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGC
GGTGGTTCTACCACAAGCTGCTCACTCGCTTCAACTTTATCGAGGCAAGC
TTTCTAGACCAT

BO17875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RA 831 CG18177-PA 1..828 17..844 4140 100 Plus
Naa60-RB 768 CG18177-PB 302..765 381..844 2320 100 Plus
Naa60-RC 720 CG18177-PC 302..640 381..719 1680 99.7 Plus
Naa60-RB 768 CG18177-PB 1..304 17..320 1520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-RA 2294 CG18177-RA 659..1486 17..844 4140 100 Plus
Naa60-RB 2231 CG18177-RB 960..1423 381..844 2320 100 Plus
Naa60-RC 1378 CG18177-RC 960..1298 381..719 1680 99.7 Plus
Naa60-RB 2231 CG18177-RB 659..962 17..320 1520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9727983..9728433 153..603 2255 100 Plus
3L 28110227 3L 9728713..9728842 715..844 650 100 Plus
3L 28110227 3L 9727787..9727909 34..156 615 100 Plus
3L 28110227 3L 9728502..9728619 602..719 575 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 16:41:15 has no hits.

BO17875.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:32 Download gff for BO17875.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:07 Download gff for BO17875.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RA 617..1458 9..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:43 Download gff for BO17875.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 659..1486 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:32 Download gff for BO17875.complete
Subject Subject Range Query Range Percent Splice Strand
CG18177-RA 617..1458 9..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:20 Download gff for BO17875.complete
Subject Subject Range Query Range Percent Splice Strand
Naa60-RA 659..1486 17..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:20 Download gff for BO17875.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9727985..9728433 155..603 100 -> Plus
3L 9728504..9728616 604..716 99 -> Plus
3L 9727553..9727569 17..33 100 -> Plus
3L 9727787..9727907 34..154 100 -> Plus
3L 9728715..9728842 717..846 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:43 Download gff for BO17875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9720653..9720669 17..33 100 -> Plus
arm_3L 9720887..9721007 34..154 100 -> Plus
arm_3L 9721815..9721942 717..846 98   Plus
arm_3L 9721085..9721533 155..603 100 -> Plus
arm_3L 9721604..9721716 604..716 99 -> Plus

BO17875.pep Sequence

Translation from 16 to 862

> BO17875.pep
MAQFTLYNKHSAPPSSESTRVDCEHVPLCSINDVQLRFLVPDDLTEVRQL
CQEWFPIDYPLSWYEDITSSTRFFALAAVYNLAIIGLIVAEIKPYRNVNK
EVIANMSDSDELYTRLSGFPMQDKGILPDSMGRSADVGYILSLGVHRSHR
RNGIGSLLLDALMNHLTTAERHSVKAIFLHTLTTNQPAIFFYEKRRFTLH
SFLPYYYNIRGKGKDGFTYVNYINGGHPPWTLLDHIKHYASMVRHTSSLC
AWLAGRVQQVVRWFYHKLLTRFNFIEASFLDH

BO17875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Naa60-PA 276 CG18177-PA 1..276 1..276 1476 100 Plus
Naa60-PB 255 CG18177-PB 1..255 1..276 1338 92.4 Plus
Naa60-PC 239 CG18177-PC 1..218 1..239 1102 89.1 Plus