Clone Sequence Records
BO17878.3prime Sequence
867 bp (691 high quality bases) assembled on 2006-10-13
> BO17878.3prime
ATGGTCTAGAAAGCTTGCTTTCTTTGCCAGCTTCAGCTTTTCGGATCCAA
AGATGACTCCAGTGTCGCCCAGTTTGCGCTTCATAGCAAAGGGATTAACC
GAATTCAAAGGGGACCGGTGATCGGTGGCTTTACCCATGGGAACCTCGGA
TTCCGATTCGCCGAATATGTTTTCCTGGGTGTCCAGCGGAGAGGGTGTGA
TATCCGGAGTCGAGGGCCGGGATGCTGCCGATGCTGCTGCTGCTTTAAAC
ATATTGGGTGAATTGACCAATCTCTTCAGGGTGCCCCGTTTGGCCGAGCT
CAGCTCGATGGCCTTGGGTTTTGGGCCGCTTTGTGAGGCCGATGTGGGAG
TCATTGGCAGAACAATGGTGGCCGCAATGCCGCTGGCACCCAACAAAGTC
TGCTGCTTGCGTGCCTCCTGGACCGCCTCCAATTGAGGTAGCAGTTCGCA
CAGACGGTCGGACAGGTGGATGCGTCCACGTTTCGTGGCGTATTTCACGG
CCAGTTGAAGCAGATCAGTGCAGGCAATCGATTCGATCAATTCCCTAGCT
CGCGTCTCGCACTCGCTGCTGCAGGCCAATGCAAACAGCTTGATGGCCGT
CTCCTTTTGCATCTTCTCTGCCCCATCCATTTGCATCAGACTGGACCGCA
GCAGTGCATCCTCCAGCTCGGACTTTTCCACTTCGACGTCGCAGAGCGGG
ATCTGCATACGCAGTTCCTGGAGCATGGGACGCGGATTGGTCATGGGATA
GGAGGTACCGCGGCACAGGACCGCCTGGACTATCTGACGTTTCTCGGATA
CAGCGACCACAAAGAAGTTGTGCGACACACTGGTGCTTTGGCTCATGGTG
TCGCAGATGGGGAACCA
BO17878.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13350-PA | 2688 | CG13350-RA | 1837..2685 | 867..19 | 4195 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ctf4-RA | 2956 | CG13350-RA | 1919..2767 | 867..19 | 4215 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13980551..13981399 | 19..867 | 4215 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-11 03:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 9131..9220 | 296..204 | 116 | 60.2 | Minus |
BO17878.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:39 Download gff for
BO17878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13350-PA | 1838..2688 | 18..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:03:31 Download gff for
BO17878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctf4-RA | 1920..2767 | 19..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:01:34 Download gff for
BO17878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctf4-RA | 1920..2767 | 19..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:01:34 Download gff for
BO17878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13980551..13981398 | 19..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:03:31 Download gff for
BO17878.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9868056..9868903 | 19..866 | 99 | | Plus |
BO17878.5prime Sequence
744 bp (742 high quality bases) assembled on 2006-10-13
> BO17878.5prime
GAAGTTATCAGTCGACATGAGCTTCTTGCGCAGTGCCCTGCGCTATGCCC
ACACCAATGGCTACACGGGACTCCTTTACACTCCGCGCGGCGAGTTCATC
ATCACGTGCGGCACAGATGGAGACATCCGGCACTGGACCTGCATTAGTGA
CGACGATCCACGCTCAAGTTGCCTGGGCGAGTTCGTCATGTGCATAGCCC
ACACGGGAACCCGTTTGCTGGCCTCGACGGATCGGAATACGATCCATGCC
TACACCTTTCCCGAGATGGACAGCGATGGCATCCTCATGCGATTCACGGC
ACCGGCTACGTGCCTCAAGGTATCCGGTGGCTATACTGCTGCCGGCAGCG
AGGATACCACTATAAAGGTGCTTAAGGGAGATACAGCTGGCAACGAAACG
GTGCTGGAGGGGCACACTGGTCCCATTCTGGCACTGGACTTGTTTGCGGA
GCGAAAGCTGCTGGTTTCCGTGGCCGGGGATGGCCAACTGAAGGTGTGGA
ACTTCGAGGAGGGCAAGGAGCTGAAGACCATTGGGGGCTTGCCAAAGGTC
AACAGTTTCGAGAGCGCCAGCCTGTATGGCACTCCGCATTTCGAGCCACA
AAGCGGTGAACTTCTGGCCTATGCCGTTGACAACGAGATTGTGGTCCTCA
ACACGGCCAACTGGGAAGTGGCCTTTAAGCTGCGCGACGACTCGGTGTCC
AGTAACTACAGCTGCTGCCAGTTCTCGCCCAATGGTGAGCGCCT
BO17878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13350-PA | 2688 | CG13350-RA | 1..728 | 17..744 | 3640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ctf4-RA | 2956 | CG13350-RA | 82..810 | 16..744 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13982508..13983236 | 744..16 | 3645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:50:05 has no hits.
BO17878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:40 Download gff for
BO17878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13350-PA | 1..728 | 17..744 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:03:33 Download gff for
BO17878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctf4-RA | 75..810 | 7..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:01:36 Download gff for
BO17878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctf4-RA | 75..810 | 7..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:01:36 Download gff for
BO17878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13982508..13983243 | 7..744 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:03:33 Download gff for
BO17878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9870013..9870748 | 7..744 | 99 | | Minus |
BO17878.complete Sequence
2719 bp assembled on 2007-03-23
GenBank Submission: FJ634244
> BO17878.complete
GAAGTTATCAGTCGACATGAGCTTCTTGCGCAGTGCCCTGCGCTATGCCC
ACACCAATGGCTACACGGGACTCCTTTACACTCCGCGCGGCGAGTTCATC
ATCACGTGCGGCACAGATGGAGACATCCGGCACTGGACCTGCATTAGTGA
CGACGATCCACGCTCAAGTTGCCTGGGCGAGTTCGTCATGTGCATAGCCC
ACACGGGAACCCGTTTGCTGGCCTCGACGGATCGGAATACGATCCATGCC
TACACCTTTCCCGAGATGGACAGCGATGGCATCCTCATGCGATTCACGGC
ACCGGCTACGTGCCTCAAGGTATCCGGTGGCTATACTGCTGCCGGCAGCG
AGGATACCACTATAAAGGTGCTTAAGGGAGATACAGCTGGCAACGAAACG
GTGCTGGAGGGGCACACTGGTCCCATTCTGGCACTGGACTTGTTTGCGGA
GCGAAAGCTGCTGGTTTCCGTGGCCGGGGATGGCCAACTGAAGGTGTGGA
ACTTCGAGGAGGGCAAGGAGCTGAAGACCATTGGGGGCTTGCCAAAGGTC
AACAGTTTCGAGAGCGCCAGCCTGTATGGCACTCCGCATTTCGAGCCACA
AAGCGGTGAACTTCTGGCCTATGCCGTTGACAACGAGATTGTGGTCCTCA
ACACGGCCAACTGGGAAGTGGCCTTTAAGCTGCGCGACGACTCGGTGTCC
AGTAACTACAGCTGCTGCCAGTTCTCGCCCAATGGTGAGCGCCTGGCCGC
CGGAACAACCAAGGGCGAGGTGAGCATCTTCGATGTAAAGAAACGGAAGG
CAGTAACAGTGGAGATTCCGCCAAGCGACTGCAATGCCATAACATGCCTT
GCCTGGAATCTGTCCGGAGAGGTGGAGGTGGCCTTCTGCGATGCCACTGG
CCAGCTGGGAACCGTATTTCTTGGCGATGCAGTCGACACAGGCAACGGCG
ATGGATTGGTGGACGACCAAGCCGAGCTGTTGGGCGATGACTATGAGTTT
GAGGCCGGCGATGACGTGGACACTGCAGCAGACGACGGCGATGGCGTTAG
TCTGGAACAGCTTAAGCGCAAGGTGATGAACTTTGCGGATCCCGTAGATC
ACGATGACGCCTCCAACCAATCCCTGGACAGCAGTAGCCGAACTGTACCT
GCACCCGTTGCCCCGCAAATCAAGCTCTTCAAGCAGCAGACGGCCTTTCA
GCCCAGTGCCACACCGGCCGATCTAGAGCATCGCTACATGGCATGGAATG
ATGTGGGCATTGTTACCGCCCATGTGGAGCCCTCAGGCGATAGCTCCATC
GATGTGGAGTTCCACGACGCTAGTATTCACCACGCTCTACACATTAGTAA
CTACAATCAGCACAATTTGGCCAGTGTGAGCAGTGGAGCTTTGGCATTGG
CCTCCAACGAATCCAGCAAGTTAGTAGTCATTGCTCTGGCCGCCGCCGGA
AACAAAGAGTGGTCACTCAGCCTCCCGGATTGCGAGAGTGCAGAGGCTGT
TGTGGCCACGCGATTTCTAGTGGCTGTGGCCACCAGCTCCAGTTTTCTGC
GTATCTTCACCGTGATGGGTACACAGCGTGAGGTGCTAACCATACCAGGA
CCAATGGTGGCTATTGCTGGACACGAGCACAGCCTAATGGTTGTTTACCA
CAGTTCCGCGCCCAGTCAGACGCAGCAGCATCTCGCCGCGATGTTGGTGA
ACATAAATGGATTGAGTTTGCGACAAGAATATCTGCCCGTTCCGCTGACT
CCAGGCCGGCAGCTCACCTGGTTTGGGTACAGCGACACCGGATCGCCGAG
TATTGCCGACAACATGGGTCTGCTGCAGTTGTATCGCCGGAGCAGCAACG
CCTGGTTCCCCATCTGCGACACCATGAAGCAAAGCACCAGTGTGTCGCAC
AACTTCTTTGTGGTCGCTGTATCCGAGAAACGTCAGATAGTCCAGGCGGT
CCTGTGCCGCGGTACCTCCTATCCCATGACCAATCCGCGTCCCATGCTCC
AGGAACTGCGTATGCAGATCCCGCTCTGCGACGTCGAAGTGGAAAAGTCC
GAGCTGGAGGATGCACTGCTGCGGTCCAGTCTGATGCAAATGGATGGGGC
AGAGAAGATGCAAAAGGAGACGGCCATCAAGCTGTTTGCATTGGCCTGCA
GCAGCGAGTGCGAGACGCGAGCTAGGGAATTGATCGAATCGATTGCCTGC
ACTGATCTGCTTCAACTGGCCGTGAAATACGCCACGAAACGTGGACGCAT
CCACCTGTCCGACCGTCTGTGCGAACTGCTACCTCAATTGGAGGCGGTCC
AGGAGGCACGCAAGCAGCAGACTTTGTTGGGTGCCAGCGGCATTGCGGCC
ACCATTGTTCTGCCAATGACTCCCACATCGGCCTCACAAAGCGGCCCAAA
ACCCAAGGCCATCGAGCTGAGCTCGGCCAAACGGGGCACCCTGAAGAGAT
TGGTCAATTCACCCAATATGTTTAAAGCAGCAGCAGCATCGGCAGCATCC
CGGCCCTCGACTCCGGATATCACACCCTCTCCGCTGGACACCCAGGAAAA
CATATTCGGCGAATCGGAATCCGAGGTTCCCATGGGTAAAGCCACCGATC
ACCGGTCCCCTTTGAATTCGGTTAATCCCTTTGCTATGAAGCGCAAACTG
GGCGACACTGGAGTCATCTTTGGATCCGAAAAGCTGAAGCTGGCAAAGAA
AGCAAGCTTTCTAGACCAT
BO17878.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ctf4-RA | 2688 | CG13350-PA | 1..2685 | 17..2701 | 13425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ctf4-RA | 2956 | CG13350-RA | 82..2767 | 16..2701 | 13430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13980551..13983236 | 2701..16 | 13430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:58:52 has no hits.
BO17878.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:06 Download gff for
BO17878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13350-RA | 1..2688 | 17..2702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:32 Download gff for
BO17878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13350-RA | 232..2924 | 7..2701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:14 Download gff for
BO17878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctf4-RA | 83..2767 | 17..2703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:06 Download gff for
BO17878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13350-RA | 232..2924 | 7..2701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:45 Download gff for
BO17878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctf4-RA | 83..2767 | 17..2703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:45 Download gff for
BO17878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13980549..13983235 | 17..2703 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:14 Download gff for
BO17878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9868054..9870740 | 17..2703 | 99 | | Minus |
BO17878.pep Sequence
Translation from 16 to 2719
> BO17878.pep
MSFLRSALRYAHTNGYTGLLYTPRGEFIITCGTDGDIRHWTCISDDDPRS
SCLGEFVMCIAHTGTRLLASTDRNTIHAYTFPEMDSDGILMRFTAPATCL
KVSGGYTAAGSEDTTIKVLKGDTAGNETVLEGHTGPILALDLFAERKLLV
SVAGDGQLKVWNFEEGKELKTIGGLPKVNSFESASLYGTPHFEPQSGELL
AYAVDNEIVVLNTANWEVAFKLRDDSVSSNYSCCQFSPNGERLAAGTTKG
EVSIFDVKKRKAVTVEIPPSDCNAITCLAWNLSGEVEVAFCDATGQLGTV
FLGDAVDTGNGDGLVDDQAELLGDDYEFEAGDDVDTAADDGDGVSLEQLK
RKVMNFADPVDHDDASNQSLDSSSRTVPAPVAPQIKLFKQQTAFQPSATP
ADLEHRYMAWNDVGIVTAHVEPSGDSSIDVEFHDASIHHALHISNYNQHN
LASVSSGALALASNESSKLVVIALAAAGNKEWSLSLPDCESAEAVVATRF
LVAVATSSSFLRIFTVMGTQREVLTIPGPMVAIAGHEHSLMVVYHSSAPS
QTQQHLAAMLVNINGLSLRQEYLPVPLTPGRQLTWFGYSDTGSPSIADNM
GLLQLYRRSSNAWFPICDTMKQSTSVSHNFFVVAVSEKRQIVQAVLCRGT
SYPMTNPRPMLQELRMQIPLCDVEVEKSELEDALLRSSLMQMDGAEKMQK
ETAIKLFALACSSECETRARELIESIACTDLLQLAVKYATKRGRIHLSDR
LCELLPQLEAVQEARKQQTLLGASGIAATIVLPMTPTSASQSGPKPKAIE
LSSAKRGTLKRLVNSPNMFKAAAASAASRPSTPDITPSPLDTQENIFGES
ESEVPMGKATDHRSPLNSVNPFAMKRKLGDTGVIFGSEKLKLAKKASFLD
H
BO17878.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ctf4-PA | 895 | CG13350-PA | 1..895 | 1..895 | 4596 | 100 | Plus |
