Clone Sequence Records
BO17881.3prime Sequence
434 bp (434 high quality bases) assembled on 2006-10-13
> BO17881.3prime
ATGGTCTAGAAAGCTTGCACCACTTACCTTCTTGAGGGCGGGCCTGCGGT
ACTCCTGCTCGACATACTGGGGATGGGTACGGATGTACTCCAAGCTCCTA
AGGATGGCAGCTGGGATTGGGGGAGGAGTGGGCAGGAGAGCTCCCTGTGG
CTGGTAGCCGTTCTCGTCGGCCACGTACGAGATCTGGACGAGCTCACCCT
CTGGCGAGTACCACGAGAAGCCTCCGTTGGCGTGGTTTCCACCAATTCCG
GACTCCTGGGCGGCGATGCCGTTGCTGGTCTCGTACTGGTAGTTGTAGTT
GCCCTCGGGCTGGATGTCGGAGCCGATCTTGGTGATGTAGGCACCAGCTT
CCTGGTTGTAGGTGGCGGCACCGTAGGCGCAGGCCAGGACGGCGGAGGCG
ACGAGCATGTAGCGGAACATGTCGACTGATAACT
BO17881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18349-PA | 405 | CG18349-RA | 1..395 | 420..26 | 1975 | 100 | Minus |
CG7941-PA | 405 | CG7941-RA | 1..395 | 420..26 | 1625 | 96.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fa2-RA | 565 | CG18349-RA | 45..449 | 430..26 | 1980 | 99.3 | Minus |
Cpr67Fa1-RA | 554 | CG7941-RA | 60..454 | 420..26 | 1765 | 96.5 | Minus |
Lcp4-RB | 527 | CG2044-RB | 274..345 | 172..101 | 225 | 87.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10892014..10892400 | 412..26 | 1920 | 99.7 | Minus |
3L | 28110227 | 3L | 10890219..10890600 | 407..26 | 1715 | 96.6 | Minus |
2R | 25286936 | 2R | 8437977..8438048 | 172..101 | 225 | 87.5 | Minus |
2R | 25286936 | 2R | 8435769..8435840 | 172..101 | 210 | 86.1 | Minus |
3L | 28110227 | 3L | 7093638..7093706 | 135..67 | 180 | 84.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:14:30 has no hits.
BO17881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:41 Download gff for
BO17881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18349-PA | 1..405 | 15..420 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:10 Download gff for
BO17881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fa2-RA | 45..459 | 15..430 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:47 Download gff for
BO17881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fa2-RA | 45..459 | 15..430 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:47 Download gff for
BO17881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10892018..10892410 | 15..408 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:10 Download gff for
BO17881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10885118..10885510 | 15..408 | 98 | | Minus |
BO17881.5prime Sequence
434 bp (434 high quality bases) assembled on 2006-10-13
> BO17881.5prime
GAAGTTATCAGTCGACATGTTCCGCTACATGCTCGTCGCCTCCGCCGTCC
TGGCCTGCGCCTACGGTGCCGCCACCTACAACCAGGAAGCTGGTGCCTAC
ATCACCAAGATCGGCTCCGACATCCAGCCCGAGGGCAACTACAACTACCA
GTACGAGACCAGCAACGGCATCGCCGCCCAGGAGTCCGGAATTGGTGGAA
ACCACGCCAACGGAGGCTTCTCGTGGTACTCGCCAGAGGGTGAGCTCGTC
CAGATCTCGTACGTGGCCGACGAGAACGGCTACCAGCCACAGGGAGCTCT
CCTGCCCACTCCTCCCCCAATCCCAGCTGCCATCCTTAGGAGCTTGGAGT
ACATCCGTACCCATCCCCAGTATGTCGAGCAGGAGTACCGCAGGCCCGCC
CTCAAGAAGGTCTTTGGTGCAAGCTTTCTAGACC
BO17881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18349-PA | 405 | CG18349-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
CG7941-PA | 405 | CG7941-RA | 1..402 | 17..418 | 1660 | 96.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fa2-RA | 565 | CG18349-RA | 45..456 | 7..418 | 2015 | 99.3 | Plus |
Cpr67Fa1-RA | 554 | CG7941-RA | 60..461 | 17..418 | 1800 | 96.5 | Plus |
Lcp4-RB | 527 | CG2044-RB | 274..345 | 265..336 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10892014..10892407 | 25..418 | 1955 | 99.7 | Plus |
3L | 28110227 | 3L | 10890219..10890607 | 30..418 | 1750 | 96.7 | Plus |
2R | 25286936 | 2R | 8437977..8438048 | 265..336 | 225 | 87.5 | Plus |
2R | 25286936 | 2R | 8435769..8435840 | 265..336 | 210 | 86.1 | Plus |
3L | 28110227 | 3L | 7093638..7093706 | 302..370 | 180 | 84.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:48:07 has no hits.
BO17881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:42 Download gff for
BO17881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18349-PA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:55 Download gff for
BO17881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fa2-RA | 45..459 | 7..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:08 Download gff for
BO17881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fa2-RA | 45..459 | 7..422 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:08 Download gff for
BO17881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10892018..10892410 | 29..422 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:55 Download gff for
BO17881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10885118..10885510 | 29..422 | 99 | | Plus |
BO17881.complete Sequence
436 bp assembled on 2006-10-11
GenBank Submission: FJ634245
> BO17881.complete
GAAGTTATCAGTCGACATGTTCCGCTACATGCTCGTCGCCTCCGCCGTCC
TGGCCTGCGCCTACGGTGCCGCCACCTACAACCAGGAAGCTGGTGCCTAC
ATCACCAAGATCGGCTCCGACATCCAGCCCGAGGGCAACTACAACTACCA
GTACGAGACCAGCAACGGCATCGCCGCCCAGGAGTCCGGAATTGGTGGAA
ACCACGCCAACGGAGGCTTCTCGTGGTACTCGCCAGAGGGTGAGCTCGTC
CAGATCTCGTACGTGGCCGACGAGAACGGCTACCAGCCACAGGGAGCTCT
CCTGCCCACTCCTCCCCCAATCCCAGCTGCCATCCTTAGGAGCTTGGAGT
ACATCCGTACCCATCCCCAGTATGTCGAGCAGGAGTACCGCAGGCCCGCC
CTCAAGAAGGTCTTTGGTGCAAGCTTTCTAGACCAT
BO17881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fa2-RA | 405 | CG18349-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
Cpr67Fa1-RA | 405 | CG7941-PA | 1..402 | 17..418 | 1800 | 96.5 | Plus |
Lcp4-RB | 339 | CG2044-PB | 225..296 | 265..336 | 225 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fa2-RA | 565 | CG18349-RA | 45..456 | 7..418 | 2015 | 99.3 | Plus |
Cpr67Fa1-RA | 554 | CG7941-RA | 60..461 | 17..418 | 1800 | 96.5 | Plus |
Lcp4-RB | 527 | CG2044-RB | 274..345 | 265..336 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10892014..10892407 | 25..418 | 1955 | 99.7 | Plus |
3L | 28110227 | 3L | 10890219..10890607 | 30..418 | 1750 | 96.7 | Plus |
2R | 25286936 | 2R | 8437977..8438048 | 265..336 | 225 | 87.5 | Plus |
2R | 25286936 | 2R | 8435769..8435840 | 265..336 | 210 | 86.1 | Plus |
3L | 28110227 | 3L | 7093638..7093706 | 302..370 | 180 | 84.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:23:35 has no hits.
BO17881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:33 Download gff for
BO17881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fa2-RA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:09 Download gff for
BO17881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fa2-RA | 16..430 | 7..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:28 Download gff for
BO17881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fa2-RA | 60..456 | 22..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:33 Download gff for
BO17881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fa2-RA | 16..430 | 7..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:31 Download gff for
BO17881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fa2-RA | 60..456 | 22..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:31 Download gff for
BO17881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10892011..10892407 | 22..420 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:28 Download gff for
BO17881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10885111..10885507 | 22..420 | 98 | | Plus |
BO17881.pep Sequence
Translation from 16 to 436
> BO17881.pep
MFRYMLVASAVLACAYGAATYNQEAGAYITKIGSDIQPEGNYNYQYETSN
GIAAQESGIGGNHANGGFSWYSPEGELVQISYVADENGYQPQGALLPTPP
PIPAAILRSLEYIRTHPQYVEQEYRRPALKKVFGASFLDH
BO17881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fa2-PA | 134 | CG18349-PA | 1..134 | 1..134 | 711 | 100 | Plus |
Cpr67Fa1-PA | 134 | CG7941-PA | 1..134 | 1..134 | 704 | 97.8 | Plus |
Cpr65Ec-PA | 127 | CG8634-PA | 1..117 | 1..118 | 336 | 54.2 | Plus |
Cpr65Eb-PA | 179 | CG8638-PA | 8..122 | 5..118 | 313 | 53 | Plus |
Cpr67Fb-PA | 122 | CG18348-PA | 1..122 | 1..131 | 297 | 48.1 | Plus |