Clone BO17881 Report

Search the DGRC for BO17881

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCpr67Fa2-RA
Protein status:BO17881.pep: validated full length
Sequenced Size:436

Clone Sequence Records

BO17881.3prime Sequence

434 bp (434 high quality bases) assembled on 2006-10-13

> BO17881.3prime
ATGGTCTAGAAAGCTTGCACCACTTACCTTCTTGAGGGCGGGCCTGCGGT
ACTCCTGCTCGACATACTGGGGATGGGTACGGATGTACTCCAAGCTCCTA
AGGATGGCAGCTGGGATTGGGGGAGGAGTGGGCAGGAGAGCTCCCTGTGG
CTGGTAGCCGTTCTCGTCGGCCACGTACGAGATCTGGACGAGCTCACCCT
CTGGCGAGTACCACGAGAAGCCTCCGTTGGCGTGGTTTCCACCAATTCCG
GACTCCTGGGCGGCGATGCCGTTGCTGGTCTCGTACTGGTAGTTGTAGTT
GCCCTCGGGCTGGATGTCGGAGCCGATCTTGGTGATGTAGGCACCAGCTT
CCTGGTTGTAGGTGGCGGCACCGTAGGCGCAGGCCAGGACGGCGGAGGCG
ACGAGCATGTAGCGGAACATGTCGACTGATAACT

BO17881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18349-PA 405 CG18349-RA 1..395 420..26 1975 100 Minus
CG7941-PA 405 CG7941-RA 1..395 420..26 1625 96.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fa2-RA 565 CG18349-RA 45..449 430..26 1980 99.3 Minus
Cpr67Fa1-RA 554 CG7941-RA 60..454 420..26 1765 96.5 Minus
Lcp4-RB 527 CG2044-RB 274..345 172..101 225 87.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10892014..10892400 412..26 1920 99.7 Minus
3L 28110227 3L 10890219..10890600 407..26 1715 96.6 Minus
2R 25286936 2R 8437977..8438048 172..101 225 87.5 Minus
2R 25286936 2R 8435769..8435840 172..101 210 86.1 Minus
3L 28110227 3L 7093638..7093706 135..67 180 84.1 Minus
Blast to na_te.dros performed on 2015-02-10 17:14:30 has no hits.

BO17881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:41 Download gff for BO17881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18349-PA 1..405 15..420 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:10 Download gff for BO17881.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa2-RA 45..459 15..430 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:47 Download gff for BO17881.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa2-RA 45..459 15..430 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:47 Download gff for BO17881.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10892018..10892410 15..408 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:10 Download gff for BO17881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10885118..10885510 15..408 98   Minus

BO17881.5prime Sequence

434 bp (434 high quality bases) assembled on 2006-10-13

> BO17881.5prime
GAAGTTATCAGTCGACATGTTCCGCTACATGCTCGTCGCCTCCGCCGTCC
TGGCCTGCGCCTACGGTGCCGCCACCTACAACCAGGAAGCTGGTGCCTAC
ATCACCAAGATCGGCTCCGACATCCAGCCCGAGGGCAACTACAACTACCA
GTACGAGACCAGCAACGGCATCGCCGCCCAGGAGTCCGGAATTGGTGGAA
ACCACGCCAACGGAGGCTTCTCGTGGTACTCGCCAGAGGGTGAGCTCGTC
CAGATCTCGTACGTGGCCGACGAGAACGGCTACCAGCCACAGGGAGCTCT
CCTGCCCACTCCTCCCCCAATCCCAGCTGCCATCCTTAGGAGCTTGGAGT
ACATCCGTACCCATCCCCAGTATGTCGAGCAGGAGTACCGCAGGCCCGCC
CTCAAGAAGGTCTTTGGTGCAAGCTTTCTAGACC

BO17881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18349-PA 405 CG18349-RA 1..402 17..418 2010 100 Plus
CG7941-PA 405 CG7941-RA 1..402 17..418 1660 96.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fa2-RA 565 CG18349-RA 45..456 7..418 2015 99.3 Plus
Cpr67Fa1-RA 554 CG7941-RA 60..461 17..418 1800 96.5 Plus
Lcp4-RB 527 CG2044-RB 274..345 265..336 225 87.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10892014..10892407 25..418 1955 99.7 Plus
3L 28110227 3L 10890219..10890607 30..418 1750 96.7 Plus
2R 25286936 2R 8437977..8438048 265..336 225 87.5 Plus
2R 25286936 2R 8435769..8435840 265..336 210 86.1 Plus
3L 28110227 3L 7093638..7093706 302..370 180 84.1 Plus
Blast to na_te.dros performed on 2015-02-12 03:48:07 has no hits.

BO17881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:42 Download gff for BO17881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18349-PA 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:55 Download gff for BO17881.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa2-RA 45..459 7..422 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:08 Download gff for BO17881.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa2-RA 45..459 7..422 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:08 Download gff for BO17881.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10892018..10892410 29..422 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:55 Download gff for BO17881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10885118..10885510 29..422 99   Plus

BO17881.complete Sequence

436 bp assembled on 2006-10-11

GenBank Submission: FJ634245

> BO17881.complete
GAAGTTATCAGTCGACATGTTCCGCTACATGCTCGTCGCCTCCGCCGTCC
TGGCCTGCGCCTACGGTGCCGCCACCTACAACCAGGAAGCTGGTGCCTAC
ATCACCAAGATCGGCTCCGACATCCAGCCCGAGGGCAACTACAACTACCA
GTACGAGACCAGCAACGGCATCGCCGCCCAGGAGTCCGGAATTGGTGGAA
ACCACGCCAACGGAGGCTTCTCGTGGTACTCGCCAGAGGGTGAGCTCGTC
CAGATCTCGTACGTGGCCGACGAGAACGGCTACCAGCCACAGGGAGCTCT
CCTGCCCACTCCTCCCCCAATCCCAGCTGCCATCCTTAGGAGCTTGGAGT
ACATCCGTACCCATCCCCAGTATGTCGAGCAGGAGTACCGCAGGCCCGCC
CTCAAGAAGGTCTTTGGTGCAAGCTTTCTAGACCAT

BO17881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fa2-RA 405 CG18349-PA 1..402 17..418 2010 100 Plus
Cpr67Fa1-RA 405 CG7941-PA 1..402 17..418 1800 96.5 Plus
Lcp4-RB 339 CG2044-PB 225..296 265..336 225 87.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fa2-RA 565 CG18349-RA 45..456 7..418 2015 99.3 Plus
Cpr67Fa1-RA 554 CG7941-RA 60..461 17..418 1800 96.5 Plus
Lcp4-RB 527 CG2044-RB 274..345 265..336 225 87.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10892014..10892407 25..418 1955 99.7 Plus
3L 28110227 3L 10890219..10890607 30..418 1750 96.7 Plus
2R 25286936 2R 8437977..8438048 265..336 225 87.5 Plus
2R 25286936 2R 8435769..8435840 265..336 210 86.1 Plus
3L 28110227 3L 7093638..7093706 302..370 180 84.1 Plus
Blast to na_te.dros performed on 2014-11-27 16:23:35 has no hits.

BO17881.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:33 Download gff for BO17881.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa2-RA 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:09 Download gff for BO17881.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa2-RA 16..430 7..422 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:28 Download gff for BO17881.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa2-RA 60..456 22..420 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:33 Download gff for BO17881.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa2-RA 16..430 7..422 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:31 Download gff for BO17881.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa2-RA 60..456 22..420 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:31 Download gff for BO17881.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10892011..10892407 22..420 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:28 Download gff for BO17881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10885111..10885507 22..420 98   Plus

BO17881.pep Sequence

Translation from 16 to 436

> BO17881.pep
MFRYMLVASAVLACAYGAATYNQEAGAYITKIGSDIQPEGNYNYQYETSN
GIAAQESGIGGNHANGGFSWYSPEGELVQISYVADENGYQPQGALLPTPP
PIPAAILRSLEYIRTHPQYVEQEYRRPALKKVFGASFLDH

BO17881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fa2-PA 134 CG18349-PA 1..134 1..134 711 100 Plus
Cpr67Fa1-PA 134 CG7941-PA 1..134 1..134 704 97.8 Plus
Cpr65Ec-PA 127 CG8634-PA 1..117 1..118 336 54.2 Plus
Cpr65Eb-PA 179 CG8638-PA 8..122 5..118 313 53 Plus
Cpr67Fb-PA 122 CG18348-PA 1..122 1..131 297 48.1 Plus