Clone Sequence Records
BO17884.3prime Sequence
676 bp (638 high quality bases) assembled on 2006-10-13
> BO17884.3prime
ATGGTCTAGAAAGCTTGCGCAGTTAAATGTCAGCGGATGAACAGCGAAGT
AGCCCTTGCTCTTGGCCACTTGCTTGGAGAGTCGCACCAGGTTGTTGTCG
TTGTTCACAAAATGACCGCCATAGATCTCCGTGCAGAGGGTGCGGACGCG
ATCCCTGCCCTCCGAGCATATCGCTGTGGCCGTGAGCAGTTCATGATCCG
CCAGCGGCAGTCCAATGCAATACGATCGGGATGCCCTCGCCACGCTGGCC
CACATGGCATAGATAAGGGTGCCCACCTCCGCCAGGCGCTGCATTTCACT
TTGACGCTCCACCACCGCGTTGCCGTGCTTGGTGAACATCAGCTCCACGG
CCATTTGGAGACGCGCCACCGACAGTTCAATGCACTGGGCAGCCGCCTCA
AGGGAGGGATGCACGTGCTCCGAAAGCTGCATCTTGGTCTTGGGATTGTC
GATGCTGTTGTTGTCCAGGAATTTACCAAAAATGTGACCAGGATTGAAGA
GTGGATTTCTGGACTTTCGCACGCCCGTATTCATGGCTTGCCCCGCGTGC
TGCAATCCGGTGAGGGCAATGAACATGCCCAAGGTGTCCAGGGATTCACC
TTGCGTGCACAGCTGCGCTGCATCTCGTAGTCCCAGCTCCGTGGTCTCAC
CGCTGAGCAAACTCTTGGGTCCCACG
BO17884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9006-PA | 1920 | l(2)k14708-RA | 1260..1915 | 676..21 | 3255 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Egm-RA | 2033 | CG9006-RA | 1312..1967 | 676..21 | 3265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11616935..11617455 | 21..541 | 2605 | 100 | Plus |
| 2R | 25286936 | 2R | 11617516..11617651 | 541..676 | 665 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:04:35 has no hits.
BO17884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:45 Download gff for
BO17884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9006-PA | 1260..1920 | 15..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:34:39 Download gff for
BO17884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Egm-RA | 1312..1974 | 13..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:34 Download gff for
BO17884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Egm-RA | 1312..1974 | 13..676 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:34 Download gff for
BO17884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11617516..11617651 | 541..676 | 99 | | Plus |
| 2R | 11616928..11617454 | 13..540 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:39 Download gff for
BO17884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7505021..7505156 | 541..676 | 99 | | Plus |
| arm_2R | 7504433..7504959 | 13..540 | 99 | <- | Plus |
BO17884.5prime Sequence
678 bp (635 high quality bases) assembled on 2006-10-13
> BO17884.5prime
GAAGTTATCAGTCGACATGCGGCCCAATTTGTTTTCCGGCGCCTCGCGGC
TCTTGACTTACAGCCGAAATGGAAAACTTCTGACTCGGGGAAGAAGCACC
AAGGCCACGTCCAGCAGCTTGGACTCACAGCACCAGGATGCGGCGACCAC
GGAGGGTGGAAGAGCGGAATCCGTAGAGGAGTCCCCGGAGCAGCAGCGAA
AACTACCAACCAGAGAGCCGCTGGCCAAAAACTTCTTCATCGGAGTGGTG
GACAAGGAGCTGCTGGCCTATCCGGAGGTGATTCCACGGGATGAGATGGC
CCAGCTGGAGAATTCCCTGCTGCCGCTGAAGAACTACTTTGTGGAGCCAC
GTGAAACGGAGGAGACCTCACCGGAGACCCTCCGCCAGCTGGGACTCTAT
GGGCTAAATGTGTCCACAGATTACGAGGGCAAAGGCTATGGCTGGAGTGC
CAGTCTAATGGCCAGTGAGCCGGATTCAACGGATATCAATGTAACCCTGG
GCCTGCAAACGCATCGCGTGGTCGTGGATCTTCTGAAAGAGGTTGGAACT
CCGTTGCAACAGCAGAGGTATCTCCAGGACTTGGCCACTGGTAAACTGAT
AGGTACCGAGGCTATATATGAGATATCTCCACCCGAGGAGGATTACTTTA
ACACCACGGCAGAGTTGTTTCCCGAATA
BO17884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9006-PA | 1920 | l(2)k14708-RA | 1..662 | 17..678 | 3310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Egm-RA | 2033 | CG9006-RA | 53..714 | 17..678 | 3310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11618310..11618971 | 678..17 | 3310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:04:57 has no hits.
BO17884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:46 Download gff for
BO17884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9006-PA | 1..661 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:34:41 Download gff for
BO17884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Egm-RA | 41..713 | 5..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:16 Download gff for
BO17884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Egm-RA | 41..713 | 5..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:16 Download gff for
BO17884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11618311..11618983 | 5..677 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:41 Download gff for
BO17884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7505816..7506488 | 5..677 | 99 | | Minus |
BO17884.complete Sequence
1951 bp assembled on 2008-08-14
GenBank Submission: FJ634246
> BO17884.complete
GAAGTTATCAGTCGACATGCGGCCCAATTTGTTTTCCGGCGCCTCGCGGC
TCTTGACTTACAGCCGAAATGGAAAACTTCTGACTCGGGGAAGAAGCACC
AAGGCCACGTCCAGCAGCTTGGACTCACAGCACCAGGATGCGGCGACCAC
GGAGGGTGGAAGAGCGGAATCCGTAGAGGAGTCCCCGGAGCAGCAGCGAA
AACTACCAACCAGAGAGCCGCTGGCCAAAAACTTCTTCATCGGAGTGGTG
GACAAGGAGCTGCTGGCCTATCCGGAGGTGATTCCACGGGATGAGATGGC
CCAGCTGGAGAATTCCCTGCTGCCGCTGAAGAACTACTTTGTGGAGCCAC
GTGAAACGGAGGAGACCTCACCGGAGACCCTCCGCCAGCTGGGACTCTAT
GGGCTAAATGTGTCCACAGATTACGAGGGCAAAGGCTATGGCTGGAGTGC
CAGTCTAATGGCCAGTGAGCCGGATTCAACGGATATCAATGTAACCCTGG
GCCTGCAAACGCATCGCGTGGTCGTGGATCTTCTGAAAGAGGTTGGAACT
CCGTTGCAACAGCAGAGGTATCTCCAGGACTTGGCCACTGGTAAACTGAT
AGGTACCGAGGCTATATATGAGATATCTCCACCCGAGGAGGATTACTTTA
ACACCACGGCAGAGTTGTTTCCCGAATACGGAAAGTGGCAGCTCAATGGC
GAAAAATCATTCGTGATCTGCACACCCGGCGAGCGGCAGCTTTTCCTGGT
TCTGGCCCAAACCCAACAGCCGAATGTTCCGGGAGTTTTGGGACGTGGCA
CCACCATCTTTCTGGTTGATTCCCAGCAGGAAGGAGTGCGCCTGGGCGAA
AAGCACGCCACATTCGGTTGCCGGAAAGCGGAAATTAGGCGTGTGCACTT
CGAAGGCGTTAAGTTGGGAGAGGATCAGGTGGTGGGCCTACCACACGATG
GCAACCGCTATTCGGAGCAGCTGGTGCGATCCTCCCGCTTGAGGGGCAGC
TTGGTGGGACTATCGCTGGCCAAGAAACTGCTAAACGAATTGGCCCAGTA
CACTGTGAACACCACTCAGTGCGGAGTACAACTGCAAGACCTGGAGCTCA
CCCGCATCCATATGTCGCGCGCGATGTGCTCCGTTTACGCGATGGAGAGC
ATGCTCTACCTGACCGCCGGGTTGCTGGATGAGTTCCGTGCCCAGGATGT
GACTCTGGAGAGTGCCATAACAAAGTACTTTACCCTGCGACAGGTGTACG
CCATTGCCTCCCAGAATCTGGGAGTCGTGGGACCCAAGAGTCTGCTCAGC
GGTGAGACCACGGAGCTGGGACTACGAGATGCAGCGCAGCTGTGCACGCA
AGGTGAATCCCTGGACACCTTGGGCATGTTCATTGCCCTCACCGGATTGC
AGCACGCGGGGCAAGCCATGAATACGGGCGTGCGAAAGTCCAGAAATCCA
CTCTTCAATCCTGGTCACATTTTTGGTAAATTCCTGGACAACAACAGCAT
CGACAATCCCAAGACCAAGATGCAGCTTTCGGAGCACGTGCATCCCTCCC
TTGAGGCGGCTGCCCAGTGCATTGAACTGTCGGTGGCGCGTCTCCAAATG
GCCGTGGAGCTGATGTTCACCAAGCACGGCAACGCGGTGGTGGAGCGTCA
AAGTGAAATGCAGCGCCTGGCGGAGGTGGGCACCCTTATCTATGCCATGT
GGGCCAGCGTGGCGAGGGCATCCCGATCGTATTGCATTGGACTGCCGCTG
GCGGATCATGAACTGCTCACGGCCACAGCGATATGCTCGGAGGGCAGGGA
TCGCGTCCGCACCCTCTGCACGGAGATCTATGGCGGTCATTTTGTGAACA
ACGACAACAACCTGGTGCGACTCTCCAAGCAAGTGGCCAAGAGCAAGGGC
TACTTCGCTGTTCATCCGCTGACATTTAACTTCGCAAGCTTTCTAGACCA
T
BO17884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Egm-RA | 1920 | CG9006-PA | 1..1917 | 17..1933 | 9585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Egm-RA | 2033 | CG9006-RA | 53..1969 | 17..1933 | 9585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11617902..11618971 | 1086..17 | 5350 | 100 | Minus |
| 2R | 25286936 | 2R | 11616933..11617455 | 1933..1411 | 2615 | 100 | Minus |
| 2R | 25286936 | 2R | 11617516..11617840 | 1411..1087 | 1625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:02:25 has no hits.
BO17884.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:51 Download gff for
BO17884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Egm-RA | 28..1961 | 5..1939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:04:27 Download gff for
BO17884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Egm-RA | 53..1969 | 17..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:39 Download gff for
BO17884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Egm-RA | 40..1956 | 17..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:18 Download gff for
BO17884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Egm-RA | 53..1969 | 17..1935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:18 Download gff for
BO17884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11617516..11617840 | 1087..1411 | 100 | <- | Minus |
| 2R | 11616931..11617454 | 1412..1935 | 99 | <- | Minus |
| 2R | 11617902..11618971 | 17..1086 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:04:27 Download gff for
BO17884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7504436..7504959 | 1412..1935 | 99 | <- | Minus |
| arm_2R | 7505021..7505345 | 1087..1411 | 100 | <- | Minus |
| arm_2R | 7505407..7506476 | 17..1086 | 100 | | Minus |
BO17884.pep Sequence
Translation from 16 to 1951
> BO17884.pep
MRPNLFSGASRLLTYSRNGKLLTRGRSTKATSSSLDSQHQDAATTEGGRA
ESVEESPEQQRKLPTREPLAKNFFIGVVDKELLAYPEVIPRDEMAQLENS
LLPLKNYFVEPRETEETSPETLRQLGLYGLNVSTDYEGKGYGWSASLMAS
EPDSTDINVTLGLQTHRVVVDLLKEVGTPLQQQRYLQDLATGKLIGTEAI
YEISPPEEDYFNTTAELFPEYGKWQLNGEKSFVICTPGERQLFLVLAQTQ
QPNVPGVLGRGTTIFLVDSQQEGVRLGEKHATFGCRKAEIRRVHFEGVKL
GEDQVVGLPHDGNRYSEQLVRSSRLRGSLVGLSLAKKLLNELAQYTVNTT
QCGVQLQDLELTRIHMSRAMCSVYAMESMLYLTAGLLDEFRAQDVTLESA
ITKYFTLRQVYAIASQNLGVVGPKSLLSGETTELGLRDAAQLCTQGESLD
TLGMFIALTGLQHAGQAMNTGVRKSRNPLFNPGHIFGKFLDNNSIDNPKT
KMQLSEHVHPSLEAAAQCIELSVARLQMAVELMFTKHGNAVVERQSEMQR
LAEVGTLIYAMWASVARASRSYCIGLPLADHELLTATAICSEGRDRVRTL
CTEIYGGHFVNNDNNLVRLSKQVAKSKGYFAVHPLTFNFASFLDH
BO17884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Egm-PA | 639 | CG9006-PA | 1..639 | 1..639 | 3267 | 100 | Plus |
| CG7461-PC | 627 | CG7461-PC | 32..617 | 55..628 | 396 | 25 | Plus |
| CG7461-PB | 627 | CG7461-PB | 32..617 | 55..628 | 396 | 25 | Plus |
| CG4860-PA | 415 | CG4860-PA | 77..387 | 122..439 | 161 | 22.6 | Plus |
