Clone BO17888 Report

Search the DGRC for BO17888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:88
Vector:pDNR-Dual
Associated Gene/Transcriptegr-RB
Protein status:BO17888.pep: validated full length
Sequenced Size:1261

Clone Sequence Records

BO17888.3prime Sequence

825 bp (759 high quality bases) assembled on 2006-10-13

> BO17888.3prime
ATGGTCTAGAAAGCTTGCCACCTTGAAGATGCCAAAGTAGCTTCGGTTGT
TTCCCTCCCGCAGAACTGCATTGCGATCGTTGTGAATGTCCTTCAGATGG
ATCCTCTCGTTTCGTTCCAGGTGGATCAGACCACTCGTGTGGCAGGTGTG
CACCTTATGTGGCATGTTGGTGGGCACCGTGTTCAAGCACTGCAGGAATG
GAGTGTCTCCTTGAAAGACGATAAATCCGTTCTGGTCGTGCGAGTTGTTG
TAGCATATCTGGGCGTATACGTAATATAGGCCTGTATTGGTCACCGTCAA
GACGCCATCGCGCGTTTGAAAGTGTCCCTGATAAGAGTTTCTCTCGTTAT
CATTTCCTATGTACATATCTCCATGGTAGCCCATACTTCCTTGGTGACGC
CGCCTGCTGCTCAAGTGGAAATGGGCTGCTGGCCTCGAGTCCTCGGATCT
GGCTTTGCGGACTAGGAGGTGGCGATGGCGGGAATGCATTCTGCGACGGT
GGTGAAGTGGTGCAGGGCTCTCTTTGGAAGTTGCCTCATTGGATGACTTT
TCCTGAAGCTCTGTGTGATTTCCTTGAATATTCTGCTCCTCATTGCGTAC
ATCGGCAATCGAGCGAGATTTTCTCTCCTGCTTCTTTTTGTGGGCATTGT
AGCTGGTAAAGTCATCGAACACATTGTCATCATTTGAGGCTGAGGATGCA
CTGTCCGTCTCGCCCTCGCCCTCAGCAGTGGTCTCAGATGTGGGCGTGGT
GCCGGTATGTGCATTGTTGAGTTTATTTAACATATCGGTGTAGTCCTCGT
AGTCTGCGCCAACATCATCCACAGA

BO17888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12919-PB 1230 egr-RB 421..1227 825..19 4035 100 Minus
CG12919-PA 1248 egr-RA 810..1245 454..19 2180 100 Minus
CG12919-PA 1248 egr-RA 421..793 825..453 1865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
egr-RB 2148 CG12919-RB 1067..1873 825..19 4035 100 Minus
egr-RA 2166 CG12919-RA 1067..1891 825..19 3845 97.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10083573..10083935 381..19 1815 100 Minus
2R 25286936 2R 10082765..10082967 825..623 1015 100 Minus
2R 25286936 2R 10083028..10083134 624..518 535 100 Minus
2R 25286936 2R 10083420..10083494 454..380 375 100 Minus
2R 25286936 2R 10083260..10083326 519..453 335 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:11:37 has no hits.

BO17888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:48 Download gff for BO17888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12919-PB 422..1230 15..824 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:58 Download gff for BO17888.3prime
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1068..1879 11..824 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:26 Download gff for BO17888.3prime
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1068..1879 11..824 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:26 Download gff for BO17888.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10083574..10083941 11..380 98   Minus
2R 10082766..10082967 623..824 100 -> Minus
2R 10083030..10083134 518..622 100 -> Minus
2R 10083262..10083326 453..517 100 -> Minus
2R 10083422..10083493 381..452 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:58 Download gff for BO17888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5970271..5970472 623..824 100 -> Minus
arm_2R 5970535..5970639 518..622 100 -> Minus
arm_2R 5970767..5970831 453..517 100 -> Minus
arm_2R 5970927..5970998 381..452 100 -> Minus
arm_2R 5971079..5971446 11..380 98   Minus

BO17888.5prime Sequence

816 bp (706 high quality bases) assembled on 2006-10-13

> BO17888.5prime
GAAGTTATCAGTCGACATGACTGCCGAGACCCTCAAGCCGTTTATAACGC
CAACGAGTGCCAACGATGATGGTTTTCCGGCCAAAGCGACCAGCACGGCG
ACCGCCCAGCGACGCACCCGCCAGCTGATCCCCCTGGTTTTGGGGTTCAT
CGGTCTGGGGCTGGTCGTTGCCATTCTCGCACTAACGATCTGGCAGACAA
CGCGTGTATCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGCGAGTCGTC
GATAATCTCCAGCAGCGTTTGGGCATAAACTATCTGGACGAGTTCGACGA
GTTCCAAAAGGAGTACGAGAATGCCCTCATCGACTATCCAAAAAAGGTGG
ATGGCCTCACGGATGAGGAGGACGACGACGATGGCGATGGTCTGGATTCC
ATTGCGGACGACGAGGACGACGACGTTAGCTATAGCTCTGTGGATGATGT
TGGCGCAGACTACGAGGACTACACCGATATGTTAAATAAACTCAACAATG
CACATACCGGCACCACGCCCACATCTGAGACCACTGCTGAGGGCGAGGGC
GAGACGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGA
CTTTACCAGCTACAATGCCCACAAAAAGAAGCAGGAGAGAAAATCTCGCT
CGATTGCCGATGTACGCAATGAGGAGCAGAATATTCAAGGAAATCACACA
GAGCTTCAGGAAAAGTCATCCAATGAGGCAACTTCCAAAGAGAGCCCTGC
ACCACTTCACCACCGTCGCAGAATGCATTCCCGCCATCGCCACCTCCTAG
TCCCGCAAGCCAGATC

BO17888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12919-PA 1248 egr-RA 1..787 17..803 3935 100 Plus
CG12919-PB 1230 egr-RB 1..787 17..803 3935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
egr-RB 2148 CG12919-RB 647..1446 17..816 3955 99.8 Plus
egr-RA 2166 CG12919-RA 647..1433 17..803 3935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10082640..10082967 312..639 1640 100 Plus
2R 25286936 2R 10079012..10079182 17..187 855 100 Plus
2R 25286936 2R 10081506..10081632 187..313 635 100 Plus
2R 25286936 2R 10083028..10083134 638..744 535 100 Plus
2R 25286936 2R 10083260..10083320 743..803 305 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:29:26 has no hits.

BO17888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:49 Download gff for BO17888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12919-PB 1..800 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:58 Download gff for BO17888.5prime
Subject Subject Range Query Range Percent Splice Strand
egr-RB 638..1446 8..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:19 Download gff for BO17888.5prime
Subject Subject Range Query Range Percent Splice Strand
egr-RB 638..1446 8..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:19 Download gff for BO17888.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10079007..10079182 11..187 97 -> Plus
2R 10081507..10081632 188..313 100 -> Plus
2R 10082642..10082967 314..639 100 -> Plus
2R 10083030..10083134 640..744 100 -> Plus
2R 10083262..10083326 745..813 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:58 Download gff for BO17888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5969012..5969137 188..313 100 -> Plus
arm_2R 5966512..5966687 11..187 97 -> Plus
arm_2R 5970147..5970472 314..639 100 -> Plus
arm_2R 5970535..5970639 640..744 100 -> Plus
arm_2R 5970767..5970831 745..813 94   Plus

BO17888.complete Sequence

1261 bp assembled on 2006-10-11

GenBank Submission: FJ634247

> BO17888.complete
GAAGTTATCAGTCGACATGACTGCCGAGACCCTCAAGCCGTTTATAACGC
CAACGAGTGCCAACGATGATGGTTTTCCGGCCAAAGCGACCAGCACGGCG
ACCGCCCAGCGACGCACCCGCCAGCTGATCCCCCTGGTTTTGGGGTTCAT
CGGTCTGGGGCTGGTCGTTGCCATTCTCGCACTAACGATCTGGCAGACAA
CGCGTGTATCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGCGAGTCGTC
GATAATCTCCAGCAGCGTTTGGGCATAAACTATCTGGACGAGTTCGACGA
GTTCCAAAAGGAGTACGAGAATGCCCTCATCGACTATCCAAAAAAGGTGG
ATGGCCTCACGGATGAGGAGGACGACGACGATGGCGATGGTCTGGATTCC
ATTGCGGACGACGAGGACGACGACGTTAGCTATAGCTCTGTGGATGATGT
TGGCGCAGACTACGAGGACTACACCGATATGTTAAATAAACTCAACAATG
CACATACCGGCACCACGCCCACATCTGAGACCACTGCTGAGGGCGAGGGC
GAGACGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGA
CTTTACCAGCTACAATGCCCACAAAAAGAAGCAGGAGAGAAAATCTCGCT
CGATTGCCGATGTACGCAATGAGGAGCAGAATATTCAAGGAAATCACACA
GAGCTTCAGGAAAAGTCATCCAATGAGGCAACTTCCAAAGAGAGCCCTGC
ACCACTTCACCACCGTCGCAGAATGCATTCCCGCCATCGCCACCTCCTAG
TCCGCAAAGCCAGATCCGAGGACTCGAGGCCAGCAGCCCATTTCCACTTG
AGCAGCAGGCGGCGTCACCAAGGAAGTATGGGCTACCATGGAGATATGTA
CATAGGAAATGATAACGAGAGAAACTCTTATCAGGGACACTTTCAAACGC
GCGATGGCGTCTTGACGGTGACCAATACAGGCCTATATTACGTATACGCC
CAGATATGCTACAACAACTCGCACGACCAGAACGGATTTATCGTCTTTCA
AGGAGACACTCCATTCCTGCAGTGCTTGAACACGGTGCCCACCAACATGC
CACATAAGGTGCACACCTGCCACACGAGTGGTCTGATCCACCTGGAACGA
AACGAGAGGATCCATCTGAAGGACATTCACAACGATCGCAATGCAGTTCT
GCGGGAGGGAAACAACCGAAGCTACTTTGGCATCTTCAAGGTGGCAAGCT
TTCTAGACCAT

BO17888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
egr-RB 1230 CG12919-PB 1..1227 17..1243 6135 100 Plus
egr-RA 1248 CG12919-PA 1..1245 17..1243 5920 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
egr-RB 2148 CG12919-RB 647..1873 17..1243 6135 100 Plus
egr-RA 2166 CG12919-RA 647..1891 17..1243 5920 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10083573..10083935 881..1243 1815 100 Plus
2R 25286936 2R 10082640..10082967 312..639 1640 100 Plus
2R 25286936 2R 10079012..10079182 17..187 855 100 Plus
2R 25286936 2R 10081506..10081632 187..313 635 100 Plus
2R 25286936 2R 10083028..10083134 638..744 535 100 Plus
2R 25286936 2R 10083420..10083494 808..882 375 100 Plus
2R 25286936 2R 10083260..10083326 743..809 335 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:22:46 has no hits.

BO17888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:34 Download gff for BO17888.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 1..1230 17..1247 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:10 Download gff for BO17888.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 639..1880 8..1251 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:57 Download gff for BO17888.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 647..1873 17..1245 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:34 Download gff for BO17888.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 639..1880 8..1251 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:12 Download gff for BO17888.complete
Subject Subject Range Query Range Percent Splice Strand
egr-RB 647..1873 17..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:12 Download gff for BO17888.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10083574..10083935 882..1245 99   Plus
2R 10079012..10079182 17..187 100 -> Plus
2R 10081507..10081632 188..313 100 -> Plus
2R 10082642..10082967 314..639 100 -> Plus
2R 10083030..10083134 640..744 100 -> Plus
2R 10083262..10083326 745..809 100 -> Plus
2R 10083422..10083493 810..881 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:57 Download gff for BO17888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5966517..5966687 17..187 100 -> Plus
arm_2R 5969012..5969137 188..313 100 -> Plus
arm_2R 5970147..5970472 314..639 100 -> Plus
arm_2R 5970535..5970639 640..744 100 -> Plus
arm_2R 5970767..5970831 745..809 100 -> Plus
arm_2R 5970927..5970998 810..881 100 -> Plus
arm_2R 5971079..5971440 882..1245 99   Plus

BO17888.pep Sequence

Translation from 16 to 1261

> BO17888.pep
MTAETLKPFITPTSANDDGFPAKATSTATAQRRTRQLIPLVLGFIGLGLV
VAILALTIWQTTRVSHLDKELKSLKRVVDNLQQRLGINYLDEFDEFQKEY
ENALIDYPKKVDGLTDEEDDDDGDGLDSIADDEDDDVSYSSVDDVGADYE
DYTDMLNKLNNAHTGTTPTSETTAEGEGETDSASSASNDDNVFDDFTSYN
AHKKKQERKSRSIADVRNEEQNIQGNHTELQEKSSNEATSKESPAPLHHR
RRMHSRHRHLLVRKARSEDSRPAAHFHLSSRRRHQGSMGYHGDMYIGNDN
ERNSYQGHFQTRDGVLTVTNTGLYYVYAQICYNNSHDQNGFIVFQGDTPF
LQCLNTVPTNMPHKVHTCHTSGLIHLERNERIHLKDIHNDRNAVLREGNN
RSYFGIFKVASFLDH

BO17888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
egr-PB 409 CG12919-PB 1..409 1..409 2162 100 Plus
egr-PA 415 CG12919-PA 1..415 1..409 2145 98.6 Plus