Clone Sequence Records
BO17888.3prime Sequence
825 bp (759 high quality bases) assembled on 2006-10-13
> BO17888.3prime
ATGGTCTAGAAAGCTTGCCACCTTGAAGATGCCAAAGTAGCTTCGGTTGT
TTCCCTCCCGCAGAACTGCATTGCGATCGTTGTGAATGTCCTTCAGATGG
ATCCTCTCGTTTCGTTCCAGGTGGATCAGACCACTCGTGTGGCAGGTGTG
CACCTTATGTGGCATGTTGGTGGGCACCGTGTTCAAGCACTGCAGGAATG
GAGTGTCTCCTTGAAAGACGATAAATCCGTTCTGGTCGTGCGAGTTGTTG
TAGCATATCTGGGCGTATACGTAATATAGGCCTGTATTGGTCACCGTCAA
GACGCCATCGCGCGTTTGAAAGTGTCCCTGATAAGAGTTTCTCTCGTTAT
CATTTCCTATGTACATATCTCCATGGTAGCCCATACTTCCTTGGTGACGC
CGCCTGCTGCTCAAGTGGAAATGGGCTGCTGGCCTCGAGTCCTCGGATCT
GGCTTTGCGGACTAGGAGGTGGCGATGGCGGGAATGCATTCTGCGACGGT
GGTGAAGTGGTGCAGGGCTCTCTTTGGAAGTTGCCTCATTGGATGACTTT
TCCTGAAGCTCTGTGTGATTTCCTTGAATATTCTGCTCCTCATTGCGTAC
ATCGGCAATCGAGCGAGATTTTCTCTCCTGCTTCTTTTTGTGGGCATTGT
AGCTGGTAAAGTCATCGAACACATTGTCATCATTTGAGGCTGAGGATGCA
CTGTCCGTCTCGCCCTCGCCCTCAGCAGTGGTCTCAGATGTGGGCGTGGT
GCCGGTATGTGCATTGTTGAGTTTATTTAACATATCGGTGTAGTCCTCGT
AGTCTGCGCCAACATCATCCACAGA
BO17888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12919-PB | 1230 | egr-RB | 421..1227 | 825..19 | 4035 | 100 | Minus |
CG12919-PA | 1248 | egr-RA | 810..1245 | 454..19 | 2180 | 100 | Minus |
CG12919-PA | 1248 | egr-RA | 421..793 | 825..453 | 1865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-RB | 2148 | CG12919-RB | 1067..1873 | 825..19 | 4035 | 100 | Minus |
egr-RA | 2166 | CG12919-RA | 1067..1891 | 825..19 | 3845 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10083573..10083935 | 381..19 | 1815 | 100 | Minus |
2R | 25286936 | 2R | 10082765..10082967 | 825..623 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 10083028..10083134 | 624..518 | 535 | 100 | Minus |
2R | 25286936 | 2R | 10083420..10083494 | 454..380 | 375 | 100 | Minus |
2R | 25286936 | 2R | 10083260..10083326 | 519..453 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:11:37 has no hits.
BO17888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:48 Download gff for
BO17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12919-PB | 422..1230 | 15..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:58 Download gff for
BO17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 1068..1879 | 11..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:26 Download gff for
BO17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 1068..1879 | 11..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:26 Download gff for
BO17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10083574..10083941 | 11..380 | 98 | | Minus |
2R | 10082766..10082967 | 623..824 | 100 | -> | Minus |
2R | 10083030..10083134 | 518..622 | 100 | -> | Minus |
2R | 10083262..10083326 | 453..517 | 100 | -> | Minus |
2R | 10083422..10083493 | 381..452 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:58 Download gff for
BO17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5970271..5970472 | 623..824 | 100 | -> | Minus |
arm_2R | 5970535..5970639 | 518..622 | 100 | -> | Minus |
arm_2R | 5970767..5970831 | 453..517 | 100 | -> | Minus |
arm_2R | 5970927..5970998 | 381..452 | 100 | -> | Minus |
arm_2R | 5971079..5971446 | 11..380 | 98 | | Minus |
BO17888.5prime Sequence
816 bp (706 high quality bases) assembled on 2006-10-13
> BO17888.5prime
GAAGTTATCAGTCGACATGACTGCCGAGACCCTCAAGCCGTTTATAACGC
CAACGAGTGCCAACGATGATGGTTTTCCGGCCAAAGCGACCAGCACGGCG
ACCGCCCAGCGACGCACCCGCCAGCTGATCCCCCTGGTTTTGGGGTTCAT
CGGTCTGGGGCTGGTCGTTGCCATTCTCGCACTAACGATCTGGCAGACAA
CGCGTGTATCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGCGAGTCGTC
GATAATCTCCAGCAGCGTTTGGGCATAAACTATCTGGACGAGTTCGACGA
GTTCCAAAAGGAGTACGAGAATGCCCTCATCGACTATCCAAAAAAGGTGG
ATGGCCTCACGGATGAGGAGGACGACGACGATGGCGATGGTCTGGATTCC
ATTGCGGACGACGAGGACGACGACGTTAGCTATAGCTCTGTGGATGATGT
TGGCGCAGACTACGAGGACTACACCGATATGTTAAATAAACTCAACAATG
CACATACCGGCACCACGCCCACATCTGAGACCACTGCTGAGGGCGAGGGC
GAGACGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGA
CTTTACCAGCTACAATGCCCACAAAAAGAAGCAGGAGAGAAAATCTCGCT
CGATTGCCGATGTACGCAATGAGGAGCAGAATATTCAAGGAAATCACACA
GAGCTTCAGGAAAAGTCATCCAATGAGGCAACTTCCAAAGAGAGCCCTGC
ACCACTTCACCACCGTCGCAGAATGCATTCCCGCCATCGCCACCTCCTAG
TCCCGCAAGCCAGATC
BO17888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12919-PA | 1248 | egr-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
CG12919-PB | 1230 | egr-RB | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-RB | 2148 | CG12919-RB | 647..1446 | 17..816 | 3955 | 99.8 | Plus |
egr-RA | 2166 | CG12919-RA | 647..1433 | 17..803 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10082640..10082967 | 312..639 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 10079012..10079182 | 17..187 | 855 | 100 | Plus |
2R | 25286936 | 2R | 10081506..10081632 | 187..313 | 635 | 100 | Plus |
2R | 25286936 | 2R | 10083028..10083134 | 638..744 | 535 | 100 | Plus |
2R | 25286936 | 2R | 10083260..10083320 | 743..803 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:29:26 has no hits.
BO17888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:49 Download gff for
BO17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12919-PB | 1..800 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:58 Download gff for
BO17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 638..1446 | 8..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:19 Download gff for
BO17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 638..1446 | 8..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:19 Download gff for
BO17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10079007..10079182 | 11..187 | 97 | -> | Plus |
2R | 10081507..10081632 | 188..313 | 100 | -> | Plus |
2R | 10082642..10082967 | 314..639 | 100 | -> | Plus |
2R | 10083030..10083134 | 640..744 | 100 | -> | Plus |
2R | 10083262..10083326 | 745..813 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:58 Download gff for
BO17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5969012..5969137 | 188..313 | 100 | -> | Plus |
arm_2R | 5966512..5966687 | 11..187 | 97 | -> | Plus |
arm_2R | 5970147..5970472 | 314..639 | 100 | -> | Plus |
arm_2R | 5970535..5970639 | 640..744 | 100 | -> | Plus |
arm_2R | 5970767..5970831 | 745..813 | 94 | | Plus |
BO17888.complete Sequence
1261 bp assembled on 2006-10-11
GenBank Submission: FJ634247
> BO17888.complete
GAAGTTATCAGTCGACATGACTGCCGAGACCCTCAAGCCGTTTATAACGC
CAACGAGTGCCAACGATGATGGTTTTCCGGCCAAAGCGACCAGCACGGCG
ACCGCCCAGCGACGCACCCGCCAGCTGATCCCCCTGGTTTTGGGGTTCAT
CGGTCTGGGGCTGGTCGTTGCCATTCTCGCACTAACGATCTGGCAGACAA
CGCGTGTATCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGCGAGTCGTC
GATAATCTCCAGCAGCGTTTGGGCATAAACTATCTGGACGAGTTCGACGA
GTTCCAAAAGGAGTACGAGAATGCCCTCATCGACTATCCAAAAAAGGTGG
ATGGCCTCACGGATGAGGAGGACGACGACGATGGCGATGGTCTGGATTCC
ATTGCGGACGACGAGGACGACGACGTTAGCTATAGCTCTGTGGATGATGT
TGGCGCAGACTACGAGGACTACACCGATATGTTAAATAAACTCAACAATG
CACATACCGGCACCACGCCCACATCTGAGACCACTGCTGAGGGCGAGGGC
GAGACGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGA
CTTTACCAGCTACAATGCCCACAAAAAGAAGCAGGAGAGAAAATCTCGCT
CGATTGCCGATGTACGCAATGAGGAGCAGAATATTCAAGGAAATCACACA
GAGCTTCAGGAAAAGTCATCCAATGAGGCAACTTCCAAAGAGAGCCCTGC
ACCACTTCACCACCGTCGCAGAATGCATTCCCGCCATCGCCACCTCCTAG
TCCGCAAAGCCAGATCCGAGGACTCGAGGCCAGCAGCCCATTTCCACTTG
AGCAGCAGGCGGCGTCACCAAGGAAGTATGGGCTACCATGGAGATATGTA
CATAGGAAATGATAACGAGAGAAACTCTTATCAGGGACACTTTCAAACGC
GCGATGGCGTCTTGACGGTGACCAATACAGGCCTATATTACGTATACGCC
CAGATATGCTACAACAACTCGCACGACCAGAACGGATTTATCGTCTTTCA
AGGAGACACTCCATTCCTGCAGTGCTTGAACACGGTGCCCACCAACATGC
CACATAAGGTGCACACCTGCCACACGAGTGGTCTGATCCACCTGGAACGA
AACGAGAGGATCCATCTGAAGGACATTCACAACGATCGCAATGCAGTTCT
GCGGGAGGGAAACAACCGAAGCTACTTTGGCATCTTCAAGGTGGCAAGCT
TTCTAGACCAT
BO17888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-RB | 1230 | CG12919-PB | 1..1227 | 17..1243 | 6135 | 100 | Plus |
egr-RA | 1248 | CG12919-PA | 1..1245 | 17..1243 | 5920 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-RB | 2148 | CG12919-RB | 647..1873 | 17..1243 | 6135 | 100 | Plus |
egr-RA | 2166 | CG12919-RA | 647..1891 | 17..1243 | 5920 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10083573..10083935 | 881..1243 | 1815 | 100 | Plus |
2R | 25286936 | 2R | 10082640..10082967 | 312..639 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 10079012..10079182 | 17..187 | 855 | 100 | Plus |
2R | 25286936 | 2R | 10081506..10081632 | 187..313 | 635 | 100 | Plus |
2R | 25286936 | 2R | 10083028..10083134 | 638..744 | 535 | 100 | Plus |
2R | 25286936 | 2R | 10083420..10083494 | 808..882 | 375 | 100 | Plus |
2R | 25286936 | 2R | 10083260..10083326 | 743..809 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:22:46 has no hits.
BO17888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:34 Download gff for
BO17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 1..1230 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:10 Download gff for
BO17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 639..1880 | 8..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:57 Download gff for
BO17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 647..1873 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:34 Download gff for
BO17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 639..1880 | 8..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:12 Download gff for
BO17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
egr-RB | 647..1873 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:12 Download gff for
BO17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10083574..10083935 | 882..1245 | 99 | | Plus |
2R | 10079012..10079182 | 17..187 | 100 | -> | Plus |
2R | 10081507..10081632 | 188..313 | 100 | -> | Plus |
2R | 10082642..10082967 | 314..639 | 100 | -> | Plus |
2R | 10083030..10083134 | 640..744 | 100 | -> | Plus |
2R | 10083262..10083326 | 745..809 | 100 | -> | Plus |
2R | 10083422..10083493 | 810..881 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:57 Download gff for
BO17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5966517..5966687 | 17..187 | 100 | -> | Plus |
arm_2R | 5969012..5969137 | 188..313 | 100 | -> | Plus |
arm_2R | 5970147..5970472 | 314..639 | 100 | -> | Plus |
arm_2R | 5970535..5970639 | 640..744 | 100 | -> | Plus |
arm_2R | 5970767..5970831 | 745..809 | 100 | -> | Plus |
arm_2R | 5970927..5970998 | 810..881 | 100 | -> | Plus |
arm_2R | 5971079..5971440 | 882..1245 | 99 | | Plus |
BO17888.pep Sequence
Translation from 16 to 1261
> BO17888.pep
MTAETLKPFITPTSANDDGFPAKATSTATAQRRTRQLIPLVLGFIGLGLV
VAILALTIWQTTRVSHLDKELKSLKRVVDNLQQRLGINYLDEFDEFQKEY
ENALIDYPKKVDGLTDEEDDDDGDGLDSIADDEDDDVSYSSVDDVGADYE
DYTDMLNKLNNAHTGTTPTSETTAEGEGETDSASSASNDDNVFDDFTSYN
AHKKKQERKSRSIADVRNEEQNIQGNHTELQEKSSNEATSKESPAPLHHR
RRMHSRHRHLLVRKARSEDSRPAAHFHLSSRRRHQGSMGYHGDMYIGNDN
ERNSYQGHFQTRDGVLTVTNTGLYYVYAQICYNNSHDQNGFIVFQGDTPF
LQCLNTVPTNMPHKVHTCHTSGLIHLERNERIHLKDIHNDRNAVLREGNN
RSYFGIFKVASFLDH
BO17888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
egr-PB | 409 | CG12919-PB | 1..409 | 1..409 | 2162 | 100 | Plus |
egr-PA | 415 | CG12919-PA | 1..415 | 1..409 | 2145 | 98.6 | Plus |