Clone Sequence Records
BO17889.3prime Sequence
305 bp (305 high quality bases) assembled on 2006-10-13
> BO17889.3prime
ATGGTCTAGAAAGCTTGCGAGCAGGAACGACGATAGCGACAGGGCGCCGA
TTCCGAGATCGAGGGCACCATAGCGATTGGCATACGGATAGGGGTAGCCG
TACGGACCCGGGCTGTTGTGGTAGTTGTTGTAGTAGCCACCAGCCGGGTA
CCGTCCTCCGTAGTAGTAGGATTCTGGCTGGGGGCCCAGGTAAGGCTGCT
GGTAGCTGACACCGAAGGAGACCAGCGGCTTGGCCTTGATGCAGGTGGTG
GCCACCACCAGGAGCACTGCTAACCAGAGATAATTGCGCATGTCGACTGA
TAACT
BO17889.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-PA | 276 | CG13053-RA | 1..273 | 291..19 | 1365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-RB | 620 | CG13053-RB | 297..569 | 291..19 | 1365 | 100 | Minus |
CG13053-RA | 358 | CG13053-RA | 35..307 | 291..19 | 1365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16259088..16259343 | 19..274 | 1280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:31:06 has no hits.
BO17889.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:50 Download gff for
BO17889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-PA | 1..276 | 16..291 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:25 Download gff for
BO17889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..307 | 19..299 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:07 Download gff for
BO17889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..307 | 19..299 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:07 Download gff for
BO17889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16259088..16259342 | 19..273 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:25 Download gff for
BO17889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16252188..16252442 | 19..273 | 100 | <- | Plus |
BO17889.5prime Sequence
305 bp (305 high quality bases) assembled on 2006-10-13
> BO17889.5prime
GAAGTTATCAGTCGACATGCGCAATTATCTCTGGTTAGCAGTGCTCCTGG
TGGTGGCCACCACCTGCATCAAGGCCAAGCCGCTGGTCTCCTTCGGTGTC
AGCTACCAGCAGCCTTACCTGGGCCCCCAGCCAGAATCCTACTACTACGG
AGGACGGTACCCGGCTGGTGGCTACTACAACAACTACCACAACAGCCCGG
GTCCGTACGGCTACCCCTATCCGTATGCCAATCGCTATGGTGCCCTCGAT
CTCGGAATCGGCGCCCTGTCGCTATCGTCGTTCCTGCTCGCAAGCTTTCT
AGACC
BO17889.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-PA | 276 | CG13053-RA | 1..273 | 17..289 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-RB | 620 | CG13053-RB | 297..569 | 17..289 | 1365 | 100 | Plus |
CG13053-RA | 358 | CG13053-RA | 35..307 | 17..289 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16259088..16259343 | 289..34 | 1280 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:38:21 has no hits.
BO17889.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:51 Download gff for
BO17889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-PA | 1..276 | 17..292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:28 Download gff for
BO17889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..307 | 9..289 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:45 Download gff for
BO17889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..307 | 9..289 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:45 Download gff for
BO17889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16259088..16259342 | 35..289 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:28 Download gff for
BO17889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16252188..16252442 | 35..289 | 100 | <- | Minus |
BO17889.complete Sequence
307 bp assembled on 2006-10-11
GenBank Submission: FJ634248
> BO17889.complete
GAAGTTATCAGTCGACATGCGCAATTATCTCTGGTTAGCAGTGCTCCTGG
TGGTGGCCACCACCTGCATCAAGGCCAAGCCGCTGGTCTCCTTCGGTGTC
AGCTACCAGCAGCCTTACCTGGGCCCCCAGCCAGAATCCTACTACTACGG
AGGACGGTACCCGGCTGGTGGCTACTACAACAACTACCACAACAGCCCGG
GTCCGTACGGCTACCCCTATCCGTATGCCAATCGCTATGGTGCCCTCGAT
CTCGGAATCGGCGCCCTGTCGCTATCGTCGTTCCTGCTCGCAAGCTTTCT
AGACCAT
BO17889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-RB | 276 | CG13053-PB | 1..273 | 17..289 | 1365 | 100 | Plus |
CG13053-RA | 276 | CG13053-PA | 1..273 | 17..289 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-RB | 620 | CG13053-RB | 297..569 | 17..289 | 1365 | 100 | Plus |
CG13053-RA | 358 | CG13053-RA | 35..307 | 17..289 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16259088..16259343 | 289..34 | 1280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:16:44 has no hits.
BO17889.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:01 Download gff for
BO17889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 1..276 | 17..292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:13 Download gff for
BO17889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..307 | 9..289 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:50 Download gff for
BO17889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 35..307 | 17..291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:01 Download gff for
BO17889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 29..307 | 9..289 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:41 Download gff for
BO17889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13053-RA | 35..307 | 17..291 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:41 Download gff for
BO17889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16259085..16259342 | 35..291 | 99 | <- | Minus |
3L | 16259409..16259426 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:50 Download gff for
BO17889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16252185..16252442 | 35..291 | 99 | <- | Minus |
arm_3L | 16252509..16252526 | 17..34 | 100 | | Minus |
BO17889.pep Sequence
Translation from 16 to 307
> BO17889.pep
MRNYLWLAVLLVVATTCIKAKPLVSFGVSYQQPYLGPQPESYYYGGRYPA
GGYYNNYHNSPGPYGYPYPYANRYGALDLGIGALSLSSFLLASFLDH
BO17889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13053-PB | 91 | CG13053-PB | 1..91 | 1..91 | 502 | 100 | Plus |
CG13053-PA | 91 | CG13053-PA | 1..91 | 1..91 | 502 | 100 | Plus |