Clone Sequence Records
BO17890.3prime Sequence
757 bp (695 high quality bases) assembled on 2006-10-13
> BO17890.3prime
ATGGTCTAGAAAGCTTGCGACATCCTGCTGCTCCTTGAAGTGGTGATAGT
GGTGGTGGATGTGCTCGTGCACATAGCGGTGTATCATGGAGCTGGAGGCG
CTGGTGTCCAGTTCCACCTCCACCTGCTGGCCAGATTCCTCAGCCTCCAA
CGACTGCTTGCCTCCTTCTGTGACTGCCTCGGCCACAGCCTCGCCCACAT
CGTCGTTGAGATCGATGAGGGTGTCCGTGCTGACCACTTTGCTGGGCGTA
CTGGTCAGCTGCGGACTGGGGGGTAGGTCCTCCTCCTCGCTGGCCAGTAG
ATGGGCGCACTCGACGGCATCGCCGTAGATCTTGGAGCCAGCCGAACTGG
AGTTTGATGTCGGTGGTCGCTGCTCCGACCGACTCGCATCCTTGGGCTGA
TCCTGCAGCATCTGGTGTTGCTGCTGCTTGTGCCGCTGTCGCCTCTGCTC
CCGATCCTTCTGCTGCAGCTGCTCACTCAGCTTGGCATAGATGAGGTTGC
CATAGTTCTTGTAGTCCTTGCTGCTCCGCTGCTGTTGCTGCTGCTGCTGC
GACTGCTCCAAACGCTGGTATCCTTGCAGCAGGTTCTTCTGGCTCTTCTT
GGGTATCGGCTGAACGGTCGCCACATTACTGGGCGTGGCCGGGGGCGAGT
GGGCGGCTGCACCGCCCCCACAGATAGTGGCGTGCAGAAAGGAGTCGTAG
CCACACAGATTCAGCTTGTTGTGGGCCGTGTTGTGCGTCTGCTGGGCGGC
CAGAACG
BO17890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11614-PA | 2787 | nkd-RA | 2046..2784 | 757..19 | 3695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-RC | 4685 | CG11614-RC | 2762..3500 | 757..19 | 3695 | 100 | Minus |
| nkd-RB | 4674 | CG11614-RB | 2751..3489 | 757..19 | 3695 | 100 | Minus |
| nkd-RA | 5051 | CG11614-RA | 3128..3866 | 757..19 | 3695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19004926..19005664 | 19..757 | 3695 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 22:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6884 | 557..396 | 278 | 65 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2536 | 612..395 | 255 | 61.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6948 | 591..392 | 238 | 60.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2511 | 591..396 | 225 | 59.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6892 | 502..320 | 189 | 59.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1149 | 483..404 | 184 | 70 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2664 | 613..396 | 176 | 58.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2845 | 601..389 | 175 | 58.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6871 | 473..354 | 174 | 61.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2436 | 473..350 | 165 | 62.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2425 | 525..413 | 156 | 60.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1152 | 473..413 | 152 | 72.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6788 | 484..396 | 148 | 62.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1587 | 471..399 | 142 | 68.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6842 | 511..396 | 136 | 58.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2870 | 465..403 | 135 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6441..6570 | 525..395 | 120 | 59.7 | Minus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..962 | 620..497 | 110 | 59.4 | Minus |
BO17890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:51 Download gff for
BO17890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11614-PA | 2046..2787 | 18..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:23:28 Download gff for
BO17890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 3128..3872 | 12..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:25 Download gff for
BO17890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 3128..3872 | 12..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:25 Download gff for
BO17890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19004922..19005664 | 13..757 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:23:28 Download gff for
BO17890.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18998022..18998764 | 13..757 | 99 | | Plus |
BO17890.5prime Sequence
777 bp (720 high quality bases) assembled on 2006-10-13
> BO17890.5prime
GAAGTTATCAGTCGACATGGCGGGTAACATTGTCAAATGGTGGAAGCATA
AAATTCTCGGCGGCTACAAACAATTCTCAGTCCAGGAATGCACCACAGAC
TCCGAGGAGCTGATGTACCACCAGGTGCGGGCCTCCTCCTCCTGCAGCGC
CCCGCCCGATTTGCTGCTGGTCAGCGAACGTGACAATAATATCCAACTGC
GATCGCCGGTAGTGAACATAATCACCACGCCGCCGGGCAATGCGTCTGGT
GCGGGAAGTAAGCAGCAGTCTCATCACCAGACGAACCACCACTCCTCGGG
CAGGAGTCATCCCGGGCACACGGCACATCCGCAGGATGTGAGCAGCGGCG
GCAGCCATAGCAAGCATCTGCGCATCAGCAGCACTTCCAATGGCAAGCAC
GGCAAATACTCAAATATGCAGCAGCAACTGCCGCAGGATGAGGATGTGGT
GGATGCGGCTGCCACGATGCAGCAGCAGCAGCACACTGGCCACGCCCACT
CGCGCCACCTGCACCACCACAAGGAGGAGCGCATCCGACTGGAGGAATTC
ACCTGCGACGTGTCCGTGGAGGGCGGCAAGTCATCGCAGCCGCTGCAGTT
CTCGTTCACGTTCTACGACCTGGACGGGCATCACGGCAAGATAACAAAGG
ACGACATCGTGNGCATTGTGTACACCATATACGAGTCCATTGGCAAGTCG
GTGGTGGTGCCCCACTGCGGCAGCAAGACAATCAACGTGCGCCTCACCGT
CAGTCCCGAGGGGCAATCGAAATCGCA
BO17890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11614-PA | 2787 | nkd-RA | 1..761 | 17..777 | 3736 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-RC | 4685 | CG11614-RC | 1083..1843 | 17..777 | 3764 | 99.6 | Plus |
| nkd-RB | 4674 | CG11614-RB | 1083..1843 | 17..777 | 3764 | 99.6 | Plus |
| nkd-RA | 5051 | CG11614-RA | 1083..1843 | 17..777 | 3764 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19010594..19011061 | 545..78 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 19008022..19008256 | 777..543 | 1134 | 98.7 | Minus |
| 3L | 28110227 | 3L | 19044304..19044367 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 18:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10637..10813 | 307..484 | 183 | 61.7 | Plus |
BO17890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:53 Download gff for
BO17890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11614-PA | 1..760 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:47:20 Download gff for
BO17890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1078..1842 | 9..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:50 Download gff for
BO17890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1078..1842 | 9..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:50 Download gff for
BO17890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19008023..19008254 | 545..776 | 98 | <- | Minus |
| 3L | 19010595..19011058 | 81..544 | 100 | <- | Minus |
| 3L | 19044304..19044372 | 9..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:47:20 Download gff for
BO17890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19001123..19001354 | 545..776 | 98 | <- | Minus |
| arm_3L | 19003695..19004158 | 81..544 | 100 | <- | Minus |
| arm_3L | 19037404..19037472 | 9..80 | 95 | | Minus |
BO17890.complete Sequence
2818 bp assembled on 2006-12-18
GenBank Submission: FJ638758
> BO17890.complete
GAAGTTATCAGTCGACATGGCGGGTAACATTGTCAAATGGTGGAAGCATA
AAATTCTCGGCGGCTACAAACAATTCTCAGTCCAGGAATGCACCACAGAC
TCCGAGGAGCTGATGTACCACCAGGTGCGGGCCTCCTCCTCCTGCAGCGC
CCCGCCCGATTTGCTGCTGGTCAGCGAACGTGACAATAATATCCAACTGC
GATCGCCGGTAGTGAACATAATCACCACGCCGCCGGGCAATGCGTCTGGT
GCGGGAAGTAAGCAGCAGTCTCATCACCAGACGAACCACCACTCCTCGGG
CAGGAGTCATCCCGGGCACACGGCACATCCGCAGGATGTGAGCAGCGGCG
GCAGCCATAGCAAGCATCTGCGCATCAGCAGCACTTCCAATGGCAAGCAC
GGCAAATACTCAAATATGCAGCAGCAACTGCCGCAGGATGAGGATGTGGT
GGATGCGGCTGCCACGATGCAGCAGCAGCAGCACACTGGCCACGCCCACT
CGCGCCACCTGCACCACCACAAGGAGGAGCGCATCCGACTGGAGGAATTC
ACCTGCGACGTGTCCGTGGAGGGCGGCAAGTCATCGCAGCCGCTGCAGTT
CTCGTTCACGTTCTACGACCTGGACGGGCATCACGGCAAGATAACAAAGG
ACGACATCGTGGGCATTGTGTACACCATATACGAGTCCATTGGCAAGTCG
GTGGTGGTGCCCCACTGCGGCAGCAAGACAATCAACGTGCGCCTCACCGT
CAGTCCCGAGGGCAAATCGAAATCGCAGCCGGTGGTGCCCGTTCCGGTGG
CAGCCGGATTCAGCAGCAGCCACGCCAGCAAACTGAAGAAGTTGCCCACG
GGTCTGGCGGCCATGTCGAAACCCCTGGCCGGCGGAGGAGTGGGATCCGG
CGGAGCGTCGGCGCTAACGACATCCGCCGGCAACCGCCGCCAGCATCGCT
ATCGACCACGCAAACTGATTAAGTCCGATGACGAGGACGATGACAGCAAC
AGCGAAAAGGAGAAGGACGCCGCCCACGCCCCTGCCGCCGACCAGCCCAG
CGGAAGTGGAACAAAGGCGACTGGGAAGAGCCATCACCACCAGTCGCAGT
CCGCCAGGTATCACCAGAAGAACAATTCCCGGGCGGAGCAGTGCTGCACG
GAACAGAATACGCCCGACAATGGCCACAATACCTACGAGAATATGCTGAA
TCTCAAGTGCTGCAAGCCGGAGGTGGACCAGGTGGACTGTCCCTCGCACC
GACAGCACCACCAGAGCCACCCGAACCATCAAATGCGCCAGCAGGACATC
TACATGAAGCAGGCCACCCAGCGGGTCAAGATGTTGCGAAGGGCGCGCAA
ACAAAAGTACCAGGACCACTGCCTCGAAACGCGACAGCGCAGCCTGTCAG
TGGGCAACGATTCCGCCTGCCCGAATCGCCATCTGCAGCTGCAGCAGCCG
CCGGTGGGTCACCCCCAGCCCCAGTCGCTGAACCACAAGAGCGCGTCGGG
GTCACCACCGCTGGGCGTGGGGGGTGGTGGCGACATGATGCTCGATGGGG
TGCAGCTGCGTCAGCCGCGACCCCATTCCCTCACCCCGCATCAGCATCAA
CAGCAAAATCAGCAGCAGCAGCAGCAGCAGCGAAAATCGGCCGAGTGCTG
GAAATCGGCGCTGAATCGCAACGATTTAATTAGCATCATCAGGGAGAGCA
TGGAGAAGAACCGCCTGTGTTTTCAGCTGAATGGAAAACCCCAAGCCAAT
GTGAGTCCCATACGGCAACCGGCAGCACAACAACAACCACAACAACAGCA
ACGCCAACGCTGCAATACGGGCTCGAAAATACCCACGTTAATTACCAACC
ACAGTCCGGTCGCCCAGCAGTCGCCGCTCAGCTGCAGTCCACCCACGGCG
GAGCCCACCACCCCCAGCATTCCAGCAGCTCCGCCGGCCATCGAGGTCAA
CGGTCAGCAGCACCACCCCACTCATCCCACTCATCCCAGCCACCACAACC
ACCACGAGCATCCCCAACCGCACATACCTATCTACCATCAGCAGTTGGCC
ATTAATCCGGCCGTTCTGGCCGCCCAGCAGACGCACAACACGGCCCACAA
CAAGCTGAATCTGTGTGGCTACGACTCCTTTCTGCACGCCACTATCTGTG
GGGGCGGTGCAGCCGCCCACTCGCCCCCGGCCACGCCCAGTAATGTGGCG
ACCGTTCAGCCGATACCCAAGAAGAGCCAGAAGAACCTGCTGCAAGGATA
CCAGCGTTTGGAGCAGTCGCAGCAGCAGCAGCAACAGCAGCGGAGCAGCA
AGGACTACAAGAACTATGGCAACCTCATCTATGCCAAGCTGAGTGAGCAG
CTGCAGCAGAAGGATCGGGAGCAGAGGCGACAGCGGCACAAGCAGCAGCA
ACACCAGATGCTGCAGGATCAGCCCAAGGATGCGAGTCGGTCGGAGCAGC
GACCACCGACATCAAACTCCAGTTCGGCTGGCTCCAAGATCTACGGCGAT
GCCGTCGAGTGCGCCCATCTACTGGCCAGCGAGGAGGAGGACCTACCCCC
CAGTCCGCAGCTGACCAGTACGCCCAGCAAAGTGGTCAGCACGGACACCC
TCATCGATCTCAACGACGATGTGGGCGAGGCTGTGGCCGAGGCAGTCACA
GAAGGAGGCAAGCAGTCGTTGGAGGCTGAGGAATCTGGCCAGCAGGTGGA
GGTGGAACTGGACACCAGCGCCTCCAGCTCCATGATACACCGCTATGTGC
ACGAGCACATCCACCACCACTATCACCACTTCAAGGAGCAGCAGGATGTC
GCAAGCTTTCTAGACCAT
BO17890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-RA | 2787 | CG11614-PA | 1..2784 | 17..2800 | 13920 | 100 | Plus |
| nkd-RC | 2421 | CG11614-PC | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| nkd-RB | 1662 | CG11614-PB | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| nkd-RC | 2421 | CG11614-PC | 1352..2418 | 1734..2800 | 5335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-RA | 5051 | CG11614-RA | 1083..3866 | 17..2800 | 13920 | 100 | Plus |
| nkd-RC | 4685 | CG11614-RC | 1083..2423 | 17..1357 | 6705 | 100 | Plus |
| nkd-RB | 4674 | CG11614-RB | 1083..2423 | 17..1357 | 6705 | 100 | Plus |
| nkd-RC | 4685 | CG11614-RC | 2434..3500 | 1734..2800 | 5335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19004926..19005992 | 2800..1734 | 5335 | 100 | Minus |
| 3L | 28110227 | 3L | 19007442..19008256 | 1357..543 | 4075 | 100 | Minus |
| 3L | 28110227 | 3L | 19010594..19011061 | 545..78 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 19006546..19006924 | 1734..1356 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 19044304..19044367 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6884 | 2262..2423 | 278 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2536 | 2207..2424 | 255 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6948 | 2228..2427 | 238 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2511 | 2228..2423 | 225 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..3000 | 2207..2417 | 208 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6892 | 2317..2499 | 189 | 59.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1149 | 2336..2415 | 184 | 70 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10637..10813 | 307..484 | 183 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2664 | 2206..2423 | 176 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2845 | 2218..2430 | 175 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6871 | 2346..2465 | 174 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2436 | 2346..2469 | 165 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2425 | 2294..2406 | 156 | 60.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1152 | 2346..2406 | 152 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6788 | 2335..2423 | 148 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1587 | 2348..2420 | 142 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6842 | 2308..2423 | 136 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2870 | 2354..2416 | 135 | 68.3 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 733..780 | 913..960 | 132 | 75 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3596..3624 | 1780..1808 | 127 | 93.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2421 | 1763..1808 | 122 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6441..6570 | 2294..2424 | 120 | 59.7 | Plus |
BO17890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:57 Download gff for
BO17890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1..2787 | 17..2801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:48 Download gff for
BO17890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 965..3748 | 17..2802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:25 Download gff for
BO17890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1083..3866 | 17..2802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:57 Download gff for
BO17890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 960..3754 | 9..2807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:09 Download gff for
BO17890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nkd-RA | 1083..3866 | 17..2802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:09 Download gff for
BO17890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19004924..19005991 | 1735..2802 | 99 | <- | Minus |
| 3L | 19006546..19006922 | 1358..1734 | 100 | <- | Minus |
| 3L | 19007442..19008254 | 545..1357 | 100 | <- | Minus |
| 3L | 19010595..19011058 | 81..544 | 100 | <- | Minus |
| 3L | 19044304..19044367 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:25 Download gff for
BO17890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18998024..18999091 | 1735..2802 | 99 | <- | Minus |
| arm_3L | 18999646..19000022 | 1358..1734 | 100 | <- | Minus |
| arm_3L | 19000542..19001354 | 545..1357 | 100 | <- | Minus |
| arm_3L | 19003695..19004158 | 81..544 | 100 | <- | Minus |
| arm_3L | 19037404..19037467 | 17..80 | 100 | | Minus |
BO17890.pep Sequence
Translation from 16 to 2818
> BO17890.pep
MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL
LVSERDNNIQLRSPVVNIITTPPGNASGAGSKQQSHHQTNHHSSGRSHPG
HTAHPQDVSSGGSHSKHLRISSTSNGKHGKYSNMQQQLPQDEDVVDAAAT
MQQQQHTGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQPLQFSFTFY
DLDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINVRLTVSPEGK
SKSQPVVPVPVAAGFSSSHASKLKKLPTGLAAMSKPLAGGGVGSGGASAL
TTSAGNRRQHRYRPRKLIKSDDEDDDSNSEKEKDAAHAPAADQPSGSGTK
ATGKSHHHQSQSARYHQKNNSRAEQCCTEQNTPDNGHNTYENMLNLKCCK
PEVDQVDCPSHRQHHQSHPNHQMRQQDIYMKQATQRVKMLRRARKQKYQD
HCLETRQRSLSVGNDSACPNRHLQLQQPPVGHPQPQSLNHKSASGSPPLG
VGGGGDMMLDGVQLRQPRPHSLTPHQHQQQNQQQQQQQRKSAECWKSALN
RNDLISIIRESMEKNRLCFQLNGKPQANVSPIRQPAAQQQPQQQQRQRCN
TGSKIPTLITNHSPVAQQSPLSCSPPTAEPTTPSIPAAPPAIEVNGQQHH
PTHPTHPSHHNHHEHPQPHIPIYHQQLAINPAVLAAQQTHNTAHNKLNLC
GYDSFLHATICGGGAAAHSPPATPSNVATVQPIPKKSQKNLLQGYQRLEQ
SQQQQQQQRSSKDYKNYGNLIYAKLSEQLQQKDREQRRQRHKQQQHQMLQ
DQPKDASRSEQRPPTSNSSSAGSKIYGDAVECAHLLASEEEDLPPSPQLT
STPSKVVSTDTLIDLNDDVGEAVAEAVTEGGKQSLEAEESGQQVEVELDT
SASSSMIHRYVHEHIHHHYHHFKEQQDVASFLDH
BO17890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nkd-PA | 928 | CG11614-PA | 1..928 | 1..928 | 4962 | 100 | Plus |
| nkd-PC | 806 | CG11614-PC | 1..806 | 1..928 | 3721 | 80.5 | Plus |
| nkd-PB | 553 | CG11614-PB | 1..488 | 1..487 | 2401 | 93.7 | Plus |
| X11Lbeta-PD | 2066 | CG32677-PD | 21..509 | 411..847 | 204 | 23.6 | Plus |
| X11Lbeta-PE | 2129 | CG32677-PE | 21..509 | 411..847 | 204 | 23.6 | Plus |
